#ln -s ../../Thalis/*_mapped_without_chrM.markedDuplicates.uniquellyMapped.MAPQ10.bw .
#ln -s ../../CAN_part3/*bw .
#ln -s  ../../part4/*bw .
#ln -s  ../../Part2SE/*bw .


for i in `ls  ../../CAN_part3/*bw`
do
i=`basename $i`
echo track ${i%.*}
echo bigDataUrl $i
echo shortLabel ${i%.*}
echo longLabel ${i%.*}
echo color 139,69,19
echo maxHeightPixels 128:30:11
echo autoScale on
echo visibility full
echo type bigWig
echo ""
done 


for i in `ls  ../../part4/*bw`
do
i=`basename $i`
echo track ${i%.*}
echo bigDataUrl $i
echo shortLabel ${i%.*}
echo longLabel ${i%.*}
echo color 0,140,100
echo maxHeightPixels 128:30:11
echo autoScale on
echo visibility full
echo type bigWig
echo ""
done 



for i in `ls  ../../Thalis/*_mapped_without_chrM.markedDuplicates.uniquellyMapped.MAPQ10.bw`
do
i=`basename $i`
echo track ${i%.*}
echo bigDataUrl $i
echo shortLabel ${i%.*}
echo longLabel ${i%.*}
if ( echo $i| grep --quiet "v_" )
then
echo color 0,0,255
else
echo color 255,0,0
fi
echo maxHeightPixels 128:30:11
echo autoScale on
echo visibility full
echo type bigWig
echo ""
done 

for i in `ls  ../../Part2SE/*bw`
do
i=`basename $i`
echo track ${i%.*}
echo bigDataUrl $i
echo shortLabel ${i%.*}
echo longLabel ${i%.*}
if ( echo $i| grep --quiet "v_" )
then
echo color 0,0,255
else
echo color 255,0,0
fi
echo maxHeightPixels 128:30:11
echo autoScale on
echo visibility full
echo type bigWig
echo ""
done