metaseqR report

Summary

Analysis summary

Summary: The gene counts table was normalized for inherent systematic or experimental biases (e.g. sequencing depth, gene length, GC content bias etc.) using the Bioconductor package DESeq after removing genes that had zero counts over all the RNA-Seq samples (21041 genes). The output of the normalization algorithm was a table with normalized counts, which can be used for differential expression analysis with statistical algorithms developed specifically for count data. Prior to the statistical testing procedure, the gene read counts were filtered for possible artifacts that could affect the subsequent statistical testing procedures. Genes presenting any of the following were excluded from further analysis: i) genes with length less than 500 (4349 genes), ii) genes whose average reads per 100 bp was less than the 25^th quantile of the total normalized distribution of average reads per 100bp (0 genes with cutoff value 0 average reads per 100 bp), iii) genes with read counts below the median read counts of the total normalized count distribution (10348 genes with cutoff value 6 normalized read counts). The total number of genes excluded due to the application of gene filters was 4448. The total (unified) number of genes excluded due to the application of all filters was 33142. The resulting gene counts table was subjected to differential expression analysis for the contrasts Wt versus ColVICreLtbR, Wt versus ColVICreTnfR1, Wt versus TnfR1, TnfR1 versus ColVICreLtbR, TnfR1 versus ColVICreTnfR1, ColVICreTnfR1 versus ColVICreLtbR using the Bioconductor package DESeq. The final numbers of differentially expressed genes were (per contrast): for the contrast Wt versus ColVICreLtbR, 1331 (144) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 524 (78) were up-regulated, 495 (66) were down-regulated and 312 (0) were not differentially expressed according to an absolute fold change cutoff value of 1 in log₂ scale, for the contrast Wt versus ColVICreTnfR1, 283 (19) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 83 (10) were up-regulated, 111 (9) were down-regulated and 89 (0) were not differentially expressed according to an absolute fold change cutoff value of 1 in log₂ scale, for the contrast Wt versus TnfR1, 686 (146) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 329 (110) were up-regulated, 255 (36) were down-regulated and 102 (0) were not differentially expressed according to an absolute fold change cutoff value of 1 in log₂ scale, for the contrast TnfR1 versus ColVICreLtbR, 1403 (275) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 408 (84) were up-regulated, 675 (189) were down-regulated and 320 (2) were not differentially expressed according to an absolute fold change cutoff value of 1 in log₂ scale, for the contrast TnfR1 versus ColVICreTnfR1, 868 (196) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 275 (54) were up-regulated, 472 (142) were down-regulated and 121 (0) were not differentially expressed according to an absolute fold change cutoff value of 1 in log₂ scale, for the contrast ColVICreTnfR1 versus ColVICreLtbR, 1374 (204) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 585 (121) were up-regulated, 525 (83) were down-regulated and 264 (0) were not differentially expressed according to an absolute fold change cutoff value of 1 in log₂ scale. Literature references for all the algorithms used can be found at the end of this report.

Input options

Read counts file: imported custom data frame
Conditions: ColVICreLtbR, Wt, TnfR1, ColVICreTnfR1
Samples included: GK3R161-ColVICreLtbR-L10, GK3R162-ColVICreLtbR-L11, GK3R163-ColVICreLtbR-L12, GK3R152-Wt-W1, GK3R153-Wt-W2, GK3R154-Wt-W3, GK3R155-TnfR1-D4, GK3R156-TnfR1-D5, GK3R157-TnfR1-D6, GK3R158-ColVICreTnfR1-T7, GK3R159-ColVICreTnfR1-T8, GK3R160-ColVICreTnfR1-T9
Samples excluded: none
Requested contrasts: Wt_vs_ColVICreLtbR, Wt_vs_ColVICreTnfR1, Wt_vs_TnfR1, TnfR1_vs_ColVICreLtbR, TnfR1_vs_ColVICreTnfR1, ColVICreTnfR1_vs_ColVICreLtbR
Library sizes: not available
Annotation: embedded
Organism:
Annotation source: Ensembl genomes
Count type: utr
Exon filters: none applied
Gene filters: length, avg.reads, expression, biotype

length
- length: 500

avg.reads
- average.per.bp: 100
- quantile: 0.25

expression
- median: TRUE
- mean: FALSE
- quantile: NA
- known: NA
- custom: NA

biotype
- pseudogene: FALSE
- snRNA: FALSE
- protein_coding: FALSE
- antisense: FALSE
- miRNA: FALSE
- snoRNA: FALSE
- lincRNA: FALSE
- processed_transcript: FALSE
- misc_RNA: FALSE
- rRNA: TRUE
- sense_intronic: FALSE
- sense_overlapping: FALSE
- polymorphic_pseudogene: FALSE
- IG_C_gene: FALSE
- IG_J_gene: FALSE
- IG_D_gene: FALSE
- IG_LV_gene: FALSE
- IG_V_gene: FALSE
- IG_V_pseudogene: TRUE
- TR_V_gene: FALSE
- TR_V_pseudogene: TRUE
- three_prime_overlapping_ncrna: FALSE

Filter application: after normalization
Normalization algorithm: DESeq
Normalization arguments: locfunc

[[list(locfunc = function (x, na.rm = FALSE) standardGeneric("median"))locfunc

Statistical algorithm(s): DESeq
Statistical arguments for DESeq: method, sharingMode, fitType

method: blind
sharingMode: fit-only
fitType: local

Meta-analysis method: no meta-analysis, reported p-values from the first supplied statistical algorithm
Multiple testing correction: Benjamini-Hochberg FDR
p-value threshold: 0.05
Logarithmic tranformation offset: 1
Analysis preset: not available
Quality control plots: multidimensional scaling, biotype detection, biotype counts, sample and biotype saturation, filtered biotypes, correlation heatmap and correlogram, pairwise scatterplots between samples, boxplots, GC-content bias, transcript length bias, mean-difference plot, mean-variance plot, DEG biotype detection, volcano plot, DEG heatmap
Figure format: png, pdf
Output directory: /data/images/proton2/run388/www/metaseqr_quantseq_run388
Output data: Annotation, p-value, Adjusted p-value (FDR), Fold change, Statistics, Read counts
Output scale(s): log2 scale, Reads per Gene Model
Output values: Normalized values
Output statistics: Mean
Total run time: 22 minutes 52 seconds

Filtered genes

Number of filtered genes: 33142 which is the union of

Filtered because of zero reads: 21041
Filtered because of exon filters: 0
Filtered because of gene filters: 12101 which is the union of
- length: 4349 genes with filter cutoff value 500
- avg.reads: 0 genes with filter cutoff value 0
- expression: 10348 genes further decomposed to (filter name, filtered genes, filter cutoff):
- - median: 10348 genes with filter cutoff value 6
- biotype: 98 genes with filter cutoff value rRNA, IG_V_pseudogene, TR_V_pseudogene

Differentially expressed genes

Number of differentially expressed genes per contrast:

Wt_vs_ColVICreLtbR: 1331 (144) statistically significant genes of which 524 (78) up regulated, 495 (66) down regulated and 312 (0) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log₂ scale.
Wt_vs_ColVICreTnfR1: 283 (19) statistically significant genes of which 83 (10) up regulated, 111 (9) down regulated and 89 (0) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log₂ scale.
Wt_vs_TnfR1: 686 (146) statistically significant genes of which 329 (110) up regulated, 255 (36) down regulated and 102 (0) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log₂ scale.
TnfR1_vs_ColVICreLtbR: 1403 (275) statistically significant genes of which 408 (84) up regulated, 675 (189) down regulated and 320 (2) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log₂ scale.
TnfR1_vs_ColVICreTnfR1: 868 (196) statistically significant genes of which 275 (54) up regulated, 472 (142) down regulated and 121 (0) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log₂ scale.
ColVICreTnfR1_vs_ColVICreLtbR: 1374 (204) statistically significant genes of which 585 (121) up regulated, 525 (83) down regulated and 264 (0) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log₂ scale.

Run log

[ 2018-03-11 17:20:10 ] INFO 2018-03-11 17:20:10: Data processing started...
[ 2018-03-11 17:20:10 ] INFO Read counts file: imported custom data frame
[ 2018-03-11 17:20:10 ] INFO Conditions: ColVICreLtbR, Wt, TnfR1, ColVICreTnfR1
[ 2018-03-11 17:20:10 ] INFO Samples to include: GK3R161-ColVICreLtbR-L10, GK3R162-ColVICreLtbR-L11, GK3R163-ColVICreLtbR-L12, GK3R152-Wt-W1, GK3R153-Wt-W2, GK3R154-Wt-W3, GK3R155-TnfR1-D4, GK3R156-TnfR1-D5, GK3R157-TnfR1-D6, GK3R158-ColVICreTnfR1-T7, GK3R159-ColVICreTnfR1-T8, GK3R160-ColVICreTnfR1-T9
[ 2018-03-11 17:20:10 ] INFO Samples to exclude: none
[ 2018-03-11 17:20:10 ] INFO Requested contrasts: Wt_vs_ColVICreLtbR, Wt_vs_ColVICreTnfR1, Wt_vs_TnfR1, TnfR1_vs_ColVICreLtbR, TnfR1_vs_ColVICreTnfR1, ColVICreTnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:20:10 ] INFO Annotation: embedded
[ 2018-03-11 17:20:10 ] INFO Organism: custom
[ 2018-03-11 17:20:10 ] INFO Reference source: ensembl
[ 2018-03-11 17:20:10 ] INFO Count type: utr
[ 2018-03-11 17:20:10 ] INFO Exon filters: none applied
[ 2018-03-11 17:20:10 ] INFO Gene filters: length, avg.reads, expression, biotype
[ 2018-03-11 17:20:10 ] INFO length:
[ 2018-03-11 17:20:10 ] INFO length: 500
[ 2018-03-11 17:20:10 ] INFO avg.reads:
[ 2018-03-11 17:20:10 ] INFO average.per.bp: 100
[ 2018-03-11 17:20:10 ] INFO quantile: 0.25
[ 2018-03-11 17:20:10 ] INFO expression:
[ 2018-03-11 17:20:10 ] INFO median: TRUE
[ 2018-03-11 17:20:10 ] INFO mean: FALSE
[ 2018-03-11 17:20:10 ] INFO quantile: NA
[ 2018-03-11 17:20:10 ] INFO known: NA
[ 2018-03-11 17:20:10 ] INFO custom: NA
[ 2018-03-11 17:20:10 ] INFO biotype:
[ 2018-03-11 17:20:10 ] INFO pseudogene: FALSE
[ 2018-03-11 17:20:10 ] INFO snRNA: FALSE
[ 2018-03-11 17:20:10 ] INFO protein_coding: FALSE
[ 2018-03-11 17:20:10 ] INFO antisense: FALSE
[ 2018-03-11 17:20:10 ] INFO miRNA: FALSE
[ 2018-03-11 17:20:10 ] INFO snoRNA: FALSE
[ 2018-03-11 17:20:10 ] INFO lincRNA: FALSE
[ 2018-03-11 17:20:10 ] INFO processed_transcript: FALSE
[ 2018-03-11 17:20:10 ] INFO misc_RNA: FALSE
[ 2018-03-11 17:20:10 ] INFO rRNA: TRUE
[ 2018-03-11 17:20:10 ] INFO sense_intronic: FALSE
[ 2018-03-11 17:20:10 ] INFO sense_overlapping: FALSE
[ 2018-03-11 17:20:10 ] INFO polymorphic_pseudogene: FALSE
[ 2018-03-11 17:20:10 ] INFO IG_C_gene: FALSE
[ 2018-03-11 17:20:10 ] INFO IG_J_gene: FALSE
[ 2018-03-11 17:20:10 ] INFO IG_D_gene: FALSE
[ 2018-03-11 17:20:10 ] INFO IG_LV_gene: FALSE
[ 2018-03-11 17:20:10 ] INFO IG_V_gene: FALSE
[ 2018-03-11 17:20:10 ] INFO IG_V_pseudogene: TRUE
[ 2018-03-11 17:20:10 ] INFO TR_V_gene: FALSE
[ 2018-03-11 17:20:10 ] INFO TR_V_pseudogene: TRUE
[ 2018-03-11 17:20:10 ] INFO three_prime_overlapping_ncrna: FALSE
[ 2018-03-11 17:20:10 ] INFO Filter application: postnorm
[ 2018-03-11 17:20:10 ] INFO Normalization algorithm: deseq
[ 2018-03-11 17:20:10 ] INFO Normalization arguments:
[ 2018-03-11 17:20:10 ] INFO locfunc:
[ 2018-03-11 17:20:10 ] INFO [[
[ 2018-03-11 17:20:10 ] INFO list(locfunc = function (x, na.rm = FALSE) standardGeneric("median"))
[ 2018-03-11 17:20:10 ] INFO locfunc
[ 2018-03-11 17:20:10 ] INFO Statistical algorithm: deseq
[ 2018-03-11 17:20:10 ] INFO Statistical arguments:
[ 2018-03-11 17:20:10 ] INFO deseq: blind, fit-only, local
[ 2018-03-11 17:20:10 ] INFO Meta-analysis method: none
[ 2018-03-11 17:20:10 ] INFO Multiple testing correction: BH
[ 2018-03-11 17:20:10 ] INFO p-value threshold: 0.05
[ 2018-03-11 17:20:10 ] INFO Logarithmic transformation offset: 1
[ 2018-03-11 17:20:10 ] INFO Quality control plots: mds, biodetection, countsbio, saturation, readnoise, filtered, correl, pairwise, boxplot, gcbias, lengthbias, meandiff, meanvar, biodist, volcano, deheatmap
[ 2018-03-11 17:20:10 ] INFO Figure format: png, pdf
[ 2018-03-11 17:20:10 ] INFO Output directory: /data/images/proton2/run388/www/metaseqr_quantseq_run388
[ 2018-03-11 17:20:10 ] INFO Output data: annotation, p.value, adj.p.value, fold.change, stats, counts, flags
[ 2018-03-11 17:20:10 ] INFO Output scale(s): log2, rpgm
[ 2018-03-11 17:20:10 ] INFO Output values: normalized
[ 2018-03-11 17:20:10 ] INFO Output statistics: mean
[ 2018-03-11 17:20:10 ] INFO Reading custom external gene annotation for from /data/results/tools/rnaseq/metaseqr/mm10/gene_data_mm10.txt.gz...
[ 2018-03-11 17:20:11 ] INFO Checking chromosomes in transcript counts and gene annotation...
[ 2018-03-11 17:20:11 ] INFO Processing transcripts...
[ 2018-03-11 17:20:11 ] INFO Separating transcripts (UTR regions) per gene for GK3R161-ColVICreLtbR-L10...
[ 2018-03-11 17:20:53 ] INFO Separating transcripts (UTR regions) per gene for GK3R162-ColVICreLtbR-L11...
[ 2018-03-11 17:21:31 ] INFO Separating transcripts (UTR regions) per gene for GK3R163-ColVICreLtbR-L12...
[ 2018-03-11 17:22:10 ] INFO Separating transcripts (UTR regions) per gene for GK3R152-Wt-W1...
[ 2018-03-11 17:22:51 ] INFO Separating transcripts (UTR regions) per gene for GK3R153-Wt-W2...
[ 2018-03-11 17:23:27 ] INFO Separating transcripts (UTR regions) per gene for GK3R154-Wt-W3...
[ 2018-03-11 17:24:06 ] INFO Separating transcripts (UTR regions) per gene for GK3R155-TnfR1-D4...
[ 2018-03-11 17:24:43 ] INFO Separating transcripts (UTR regions) per gene for GK3R156-TnfR1-D5...
[ 2018-03-11 17:25:21 ] INFO Separating transcripts (UTR regions) per gene for GK3R157-TnfR1-D6...
[ 2018-03-11 17:26:01 ] INFO Separating transcripts (UTR regions) per gene for GK3R158-ColVICreTnfR1-T7...
[ 2018-03-11 17:26:42 ] INFO Separating transcripts (UTR regions) per gene for GK3R159-ColVICreTnfR1-T8...
[ 2018-03-11 17:27:21 ] INFO Separating transcripts (UTR regions) per gene for GK3R160-ColVICreTnfR1-T9...
[ 2018-03-11 17:27:58 ] INFO Saving gene model to /data/images/proton2/run388/www/metaseqr_quantseq_run388/data/gene_model.RData
[ 2018-03-11 17:28:01 ] INFO Summarizing count data...
[ 2018-03-11 17:28:12 ] INFO Removing genes with zero counts in all samples...
[ 2018-03-11 17:28:12 ] INFO Normalizing with: deseq
[ 2018-03-11 17:28:13 ] INFO Applying gene filter length...
[ 2018-03-11 17:28:13 ] INFO Threshold below which ignored: 500
[ 2018-03-11 17:28:13 ] INFO Applying gene filter avg.reads...
[ 2018-03-11 17:28:14 ] INFO Threshold below which ignored: 0
[ 2018-03-11 17:28:14 ] INFO Applying gene filter expression...
[ 2018-03-11 17:28:14 ] INFO Threshold below which ignored: 6
[ 2018-03-11 17:28:14 ] INFO Applying gene filter biotype...
[ 2018-03-11 17:28:14 ] INFO Biotypes ignored: rRNA, IG_V_pseudogene, TR_V_pseudogene
[ 2018-03-11 17:28:14 ] INFO 33142 genes filtered out
[ 2018-03-11 17:28:14 ] INFO 16406 genes remain after filtering
[ 2018-03-11 17:28:14 ] INFO Running statistical tests with: deseq
[ 2018-03-11 17:28:14 ] INFO Contrast: Wt_vs_ColVICreLtbR
[ 2018-03-11 17:28:29 ] INFO Contrast: Wt_vs_ColVICreTnfR1
[ 2018-03-11 17:28:49 ] INFO Contrast: Wt_vs_TnfR1
[ 2018-03-11 17:29:06 ] INFO Contrast: TnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:29:22 ] INFO Contrast: TnfR1_vs_ColVICreTnfR1
[ 2018-03-11 17:29:42 ] INFO Contrast: ColVICreTnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:30:00 ] INFO Contrast Wt_vs_ColVICreLtbR: found 1331 genes
[ 2018-03-11 17:30:00 ] INFO Contrast Wt_vs_ColVICreTnfR1: found 283 genes
[ 2018-03-11 17:30:00 ] INFO Contrast Wt_vs_TnfR1: found 686 genes
[ 2018-03-11 17:30:00 ] INFO Contrast TnfR1_vs_ColVICreLtbR: found 1403 genes
[ 2018-03-11 17:30:00 ] INFO Contrast TnfR1_vs_ColVICreTnfR1: found 868 genes
[ 2018-03-11 17:30:00 ] INFO Contrast ColVICreTnfR1_vs_ColVICreLtbR: found 1374 genes
[ 2018-03-11 17:30:00 ] INFO Building output files...
[ 2018-03-11 17:30:02 ] INFO Contrast: Wt_vs_ColVICreLtbR
[ 2018-03-11 17:30:02 ] INFO Adding non-filtered data...
[ 2018-03-11 17:30:02 ] INFO binding annotation...
[ 2018-03-11 17:30:02 ] INFO binding p-values...
[ 2018-03-11 17:30:03 ] INFO binding FDRs...
[ 2018-03-11 17:30:03 ] INFO binding log2 normalized fold changes...
[ 2018-03-11 17:30:03 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:04 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:04 ] INFO binding all normalized counts for Wt...
[ 2018-03-11 17:30:05 ] INFO binding all normalized counts for ColVICreLtbR...
[ 2018-03-11 17:30:05 ] INFO binding filtering flags...
[ 2018-03-11 17:30:06 ] INFO Writing output...
[ 2018-03-11 17:30:06 ] INFO Adding filtered data...
[ 2018-03-11 17:30:06 ] INFO binding annotation...
[ 2018-03-11 17:30:06 ] INFO binding p-values...
[ 2018-03-11 17:30:06 ] INFO binding FDRs...
[ 2018-03-11 17:30:08 ] INFO binding log2 normalized fold changes...
[ 2018-03-11 17:30:08 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:08 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:09 ] INFO binding all normalized counts for Wt...
[ 2018-03-11 17:30:09 ] INFO binding all normalized counts for ColVICreLtbR...
[ 2018-03-11 17:30:09 ] INFO binding filtering flags...
[ 2018-03-11 17:30:10 ] INFO Writing output...
[ 2018-03-11 17:30:12 ] INFO Contrast: Wt_vs_ColVICreTnfR1
[ 2018-03-11 17:30:12 ] INFO Adding non-filtered data...
[ 2018-03-11 17:30:12 ] INFO binding annotation...
[ 2018-03-11 17:30:13 ] INFO binding p-values...
[ 2018-03-11 17:30:13 ] INFO binding FDRs...
[ 2018-03-11 17:30:13 ] INFO binding log2 normalized fold changes...
[ 2018-03-11 17:30:13 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:14 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:14 ] INFO binding all normalized counts for Wt...
[ 2018-03-11 17:30:15 ] INFO binding all normalized counts for ColVICreTnfR1...
[ 2018-03-11 17:30:16 ] INFO binding filtering flags...
[ 2018-03-11 17:30:17 ] INFO Writing output...
[ 2018-03-11 17:30:17 ] INFO Adding filtered data...
[ 2018-03-11 17:30:17 ] INFO binding annotation...
[ 2018-03-11 17:30:17 ] INFO binding p-values...
[ 2018-03-11 17:30:17 ] INFO binding FDRs...
[ 2018-03-11 17:30:17 ] INFO binding log2 normalized fold changes...
[ 2018-03-11 17:30:17 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:18 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:19 ] INFO binding all normalized counts for Wt...
[ 2018-03-11 17:30:19 ] INFO binding all normalized counts for ColVICreTnfR1...
[ 2018-03-11 17:30:19 ] INFO binding filtering flags...
[ 2018-03-11 17:30:19 ] INFO Writing output...
[ 2018-03-11 17:30:21 ] INFO Contrast: Wt_vs_TnfR1
[ 2018-03-11 17:30:21 ] INFO Adding non-filtered data...
[ 2018-03-11 17:30:21 ] INFO binding annotation...
[ 2018-03-11 17:30:22 ] INFO binding p-values...
[ 2018-03-11 17:30:22 ] INFO binding FDRs...
[ 2018-03-11 17:30:23 ] INFO binding log2 normalized fold changes...
[ 2018-03-11 17:30:23 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:23 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:24 ] INFO binding all normalized counts for Wt...
[ 2018-03-11 17:30:24 ] INFO binding all normalized counts for TnfR1...
[ 2018-03-11 17:30:25 ] INFO binding filtering flags...
[ 2018-03-11 17:30:26 ] INFO Writing output...
[ 2018-03-11 17:30:26 ] INFO Adding filtered data...
[ 2018-03-11 17:30:26 ] INFO binding annotation...
[ 2018-03-11 17:30:26 ] INFO binding p-values...
[ 2018-03-11 17:30:26 ] INFO binding FDRs...
[ 2018-03-11 17:30:26 ] INFO binding log2 normalized fold changes...
[ 2018-03-11 17:30:26 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:27 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:28 ] INFO binding all normalized counts for Wt...
[ 2018-03-11 17:30:28 ] INFO binding all normalized counts for TnfR1...
[ 2018-03-11 17:30:28 ] INFO binding filtering flags...
[ 2018-03-11 17:30:29 ] INFO Writing output...
[ 2018-03-11 17:30:31 ] INFO Contrast: TnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:30:31 ] INFO Adding non-filtered data...
[ 2018-03-11 17:30:31 ] INFO binding annotation...
[ 2018-03-11 17:30:31 ] INFO binding p-values...
[ 2018-03-11 17:30:31 ] INFO binding FDRs...
[ 2018-03-11 17:30:32 ] INFO binding log2 normalized fold changes...
[ 2018-03-11 17:30:32 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:33 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:33 ] INFO binding all normalized counts for TnfR1...
[ 2018-03-11 17:30:34 ] INFO binding all normalized counts for ColVICreLtbR...
[ 2018-03-11 17:30:34 ] INFO binding filtering flags...
[ 2018-03-11 17:30:35 ] INFO Writing output...
[ 2018-03-11 17:30:35 ] INFO Adding filtered data...
[ 2018-03-11 17:30:35 ] INFO binding annotation...
[ 2018-03-11 17:30:35 ] INFO binding p-values...
[ 2018-03-11 17:30:35 ] INFO binding FDRs...
[ 2018-03-11 17:30:36 ] INFO binding log2 normalized fold changes...
[ 2018-03-11 17:30:36 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:38 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:38 ] INFO binding all normalized counts for TnfR1...
[ 2018-03-11 17:30:38 ] INFO binding all normalized counts for ColVICreLtbR...
[ 2018-03-11 17:30:38 ] INFO binding filtering flags...
[ 2018-03-11 17:30:39 ] INFO Writing output...
[ 2018-03-11 17:30:41 ] INFO Contrast: TnfR1_vs_ColVICreTnfR1
[ 2018-03-11 17:30:41 ] INFO Adding non-filtered data...
[ 2018-03-11 17:30:41 ] INFO binding annotation...
[ 2018-03-11 17:30:42 ] INFO binding p-values...
[ 2018-03-11 17:30:42 ] INFO binding FDRs...
[ 2018-03-11 17:30:42 ] INFO binding log2 normalized fold changes...
[ 2018-03-11 17:30:42 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:43 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:43 ] INFO binding all normalized counts for TnfR1...
[ 2018-03-11 17:30:44 ] INFO binding all normalized counts for ColVICreTnfR1...
[ 2018-03-11 17:30:44 ] INFO binding filtering flags...
[ 2018-03-11 17:30:45 ] INFO Writing output...
[ 2018-03-11 17:30:45 ] INFO Adding filtered data...
[ 2018-03-11 17:30:45 ] INFO binding annotation...
[ 2018-03-11 17:30:45 ] INFO binding p-values...
[ 2018-03-11 17:30:45 ] INFO binding FDRs...
[ 2018-03-11 17:30:45 ] INFO binding log2 normalized fold changes...
[ 2018-03-11 17:30:45 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:46 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:47 ] INFO binding all normalized counts for TnfR1...
[ 2018-03-11 17:30:47 ] INFO binding all normalized counts for ColVICreTnfR1...
[ 2018-03-11 17:30:47 ] INFO binding filtering flags...
[ 2018-03-11 17:30:48 ] INFO Writing output...
[ 2018-03-11 17:30:50 ] INFO Contrast: ColVICreTnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:30:50 ] INFO Adding non-filtered data...
[ 2018-03-11 17:30:50 ] INFO binding annotation...
[ 2018-03-11 17:30:51 ] INFO binding p-values...
[ 2018-03-11 17:30:51 ] INFO binding FDRs...
[ 2018-03-11 17:30:51 ] INFO binding log2 normalized fold changes...
[ 2018-03-11 17:30:51 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:52 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:52 ] INFO binding all normalized counts for ColVICreTnfR1...
[ 2018-03-11 17:30:53 ] INFO binding all normalized counts for ColVICreLtbR...
[ 2018-03-11 17:30:53 ] INFO binding filtering flags...
[ 2018-03-11 17:30:54 ] INFO Writing output...
[ 2018-03-11 17:30:54 ] INFO Adding filtered data...
[ 2018-03-11 17:30:54 ] INFO binding annotation...
[ 2018-03-11 17:30:54 ] INFO binding p-values...
[ 2018-03-11 17:30:54 ] INFO binding FDRs...
[ 2018-03-11 17:30:55 ] INFO binding log2 normalized fold changes...
[ 2018-03-11 17:30:55 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:56 ] INFO binding normalized mean counts...
[ 2018-03-11 17:30:56 ] INFO binding all normalized counts for ColVICreTnfR1...
[ 2018-03-11 17:30:56 ] INFO binding all normalized counts for ColVICreLtbR...
[ 2018-03-11 17:30:56 ] INFO binding filtering flags...
[ 2018-03-11 17:30:57 ] INFO Writing output...
[ 2018-03-11 17:30:59 ] INFO Creating quality control graphs...
[ 2018-03-11 17:30:59 ] INFO Plotting in png format...
[ 2018-03-11 17:30:59 ] INFO Plotting mds...
[ 2018-03-11 17:31:00 ] INFO Plotting biodetection...
[ 2018-03-11 17:31:02 ] INFO Plotting countsbio...
[ 2018-03-11 17:31:04 ] INFO Plotting saturation...
[ 2018-03-11 17:31:16 ] INFO Plotting readnoise...
[ 2018-03-11 17:31:20 ] INFO Plotting correl...
[ 2018-03-11 17:31:21 ] INFO Plotting pairwise...
[ 2018-03-11 17:32:12 ] INFO Plotting boxplot...
[ 2018-03-11 17:32:12 ] INFO Plotting gcbias...
[ 2018-03-11 17:32:13 ] INFO Plotting lengthbias...
[ 2018-03-11 17:32:14 ] INFO Plotting meandiff...
[ 2018-03-11 17:32:16 ] INFO Plotting meanvar...
[ 2018-03-11 17:32:30 ] INFO Plotting boxplot...
[ 2018-03-11 17:32:31 ] INFO Plotting gcbias...
[ 2018-03-11 17:32:32 ] INFO Plotting lengthbias...
[ 2018-03-11 17:32:33 ] INFO Plotting meandiff...
[ 2018-03-11 17:32:35 ] INFO Plotting meanvar...
[ 2018-03-11 17:32:50 ] INFO Plotting biodist...
[ 2018-03-11 17:32:50 ] INFO Contrast: Wt_vs_ColVICreLtbR
[ 2018-03-11 17:32:51 ] INFO Contrast: Wt_vs_ColVICreTnfR1
[ 2018-03-11 17:32:51 ] INFO Contrast: Wt_vs_TnfR1
[ 2018-03-11 17:32:52 ] INFO Contrast: TnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:32:52 ] INFO Contrast: TnfR1_vs_ColVICreTnfR1
[ 2018-03-11 17:32:52 ] INFO Contrast: ColVICreTnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:32:53 ] INFO Plotting volcano...
[ 2018-03-11 17:32:53 ] INFO Contrast: Wt_vs_ColVICreLtbR
[ 2018-03-11 17:32:53 ] INFO Contrast: Wt_vs_ColVICreTnfR1
[ 2018-03-11 17:32:54 ] INFO Contrast: Wt_vs_TnfR1
[ 2018-03-11 17:32:54 ] INFO Contrast: TnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:32:55 ] INFO Contrast: TnfR1_vs_ColVICreTnfR1
[ 2018-03-11 17:32:55 ] INFO Contrast: ColVICreTnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:32:56 ] INFO Plotting deheatmap...
[ 2018-03-11 17:32:56 ] INFO Contrast: Wt_vs_ColVICreLtbR
[ 2018-03-11 17:33:41 ] INFO Contrast: Wt_vs_ColVICreTnfR1
[ 2018-03-11 17:34:22 ] INFO Contrast: Wt_vs_TnfR1
[ 2018-03-11 17:35:05 ] INFO Contrast: TnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:35:47 ] INFO Contrast: TnfR1_vs_ColVICreTnfR1
[ 2018-03-11 17:36:30 ] INFO Contrast: ColVICreTnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:37:13 ] INFO Plotting filtered...
[ 2018-03-11 17:37:13 ] INFO Plotting in pdf format...
[ 2018-03-11 17:37:13 ] INFO Plotting mds...
[ 2018-03-11 17:37:13 ] INFO Plotting biodetection...
[ 2018-03-11 17:37:14 ] INFO Plotting countsbio...
[ 2018-03-11 17:37:16 ] INFO Plotting saturation...
[ 2018-03-11 17:37:24 ] INFO Plotting readnoise...
[ 2018-03-11 17:37:27 ] INFO Plotting correl...
[ 2018-03-11 17:37:28 ] INFO Plotting pairwise...
[ 2018-03-11 17:37:55 ] INFO Plotting boxplot...
[ 2018-03-11 17:37:55 ] INFO Plotting gcbias...
[ 2018-03-11 17:37:57 ] INFO Plotting lengthbias...
[ 2018-03-11 17:37:58 ] INFO Plotting meandiff...
[ 2018-03-11 17:38:01 ] INFO Plotting meanvar...
[ 2018-03-11 17:38:17 ] INFO Plotting boxplot...
[ 2018-03-11 17:38:17 ] INFO Plotting gcbias...
[ 2018-03-11 17:38:19 ] INFO Plotting lengthbias...
[ 2018-03-11 17:38:20 ] INFO Plotting meandiff...
[ 2018-03-11 17:38:23 ] INFO Plotting meanvar...
[ 2018-03-11 17:38:39 ] INFO Plotting biodist...
[ 2018-03-11 17:38:39 ] INFO Contrast: Wt_vs_ColVICreLtbR
[ 2018-03-11 17:38:40 ] INFO Contrast: Wt_vs_ColVICreTnfR1
[ 2018-03-11 17:38:40 ] INFO Contrast: Wt_vs_TnfR1
[ 2018-03-11 17:38:40 ] INFO Contrast: TnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:38:40 ] INFO Contrast: TnfR1_vs_ColVICreTnfR1
[ 2018-03-11 17:38:41 ] INFO Contrast: ColVICreTnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:38:41 ] INFO Plotting volcano...
[ 2018-03-11 17:38:41 ] INFO Contrast: Wt_vs_ColVICreLtbR
[ 2018-03-11 17:38:41 ] INFO Contrast: Wt_vs_ColVICreTnfR1
[ 2018-03-11 17:38:41 ] INFO Contrast: Wt_vs_TnfR1
[ 2018-03-11 17:38:42 ] INFO Contrast: TnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:38:42 ] INFO Contrast: TnfR1_vs_ColVICreTnfR1
[ 2018-03-11 17:38:42 ] INFO Contrast: ColVICreTnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:38:43 ] INFO Plotting deheatmap...
[ 2018-03-11 17:38:43 ] INFO Contrast: Wt_vs_ColVICreLtbR
[ 2018-03-11 17:39:26 ] INFO Contrast: Wt_vs_ColVICreTnfR1
[ 2018-03-11 17:40:09 ] INFO Contrast: Wt_vs_TnfR1
[ 2018-03-11 17:40:51 ] INFO Contrast: TnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:41:34 ] INFO Contrast: TnfR1_vs_ColVICreTnfR1
[ 2018-03-11 17:42:18 ] INFO Contrast: ColVICreTnfR1_vs_ColVICreLtbR
[ 2018-03-11 17:43:00 ] INFO Plotting filtered...
[ 2018-03-11 17:43:00 ] INFO Creating HTML report...
[ 2018-03-11 17:43:00 ] INFO Compressing figures...

Figures

Multidimensional scaling

The Multi-Dimensional Scaling (MDS) plots comprise a means of visualizing the level of similarity of individual cases of a dataset. It is similar to Principal Component Analysis (PCA), but instead of using the covariance matrix to find similarities among cases, MDS uses absolute distance metrics such as the classical Euclidean distance. Because of the relative linear relations among sequencing samples, it provides a more realistic clustering among samples. MDS serves quality control and it can be interpreted as follows: when the distance among samples of the same biological condition in the MDS space is small, this is an indication of high correlation and reproducibility among them. When this distance is larger or heterogeneous (e.g. the 3rd sample of a triplicate set is further from the other 2), this constitutes an indication of low correlation and reproducibility among samples. It can help exclude poor samples from further analysis.

Biotype detection

The biotype detection bar diagrams are a set of quality control charts that show the percentage of each biotype in the genome (i.e. in the whole set of features provided, for example, protein coding genes, non coding RNAs or pseudogenes) in grey bars, which proportion has been detected in a sample before normalization and after a basic filtering by removing features with zero counts in red lined bars, and the percentage of each biotype within the sample in solid red bars. The difference between grey bars and solid red bars is that the grey bars show the percentage of a feature in the genome while the solid red bars show the percentage in the sample. Thus, the solid red bars may be sometimes higher than the grey bars because certain features (e.g. protein coding genes) may be detected within a sample with a higher proportion relatively to their presence in the genome, as compared with other features. For example, while the percentage of protein coding genes in the whole genome is already higher than other biotypes, this percentage is expected to be even higher in an RNA-Seq experiment where one expects protein-coding genes to exhibit greater abundance. The vertical green line separates the most abundant biotypes (on the left-hand side, corresponding to the left axis scale) from the rest (on the right-hand side, corresponding to the right axis scale). Otherwise, the lower abundance biotypes would be indistinguishable. Unexpected outcomes in this quality control chart (e.g. very low detection of protein coding genes) would signify possible low quality of a sample.

Biotype detection counts

The biotype detection counts boxplots are a set of quality control charts that depict both the biological classification for the detected features and the actual distribution of the read counts for each biological type. The boxplot comprises a means of summarizing the read counts distribution of a sample in the form of a bar with extending lines, as commonly used way of graphically presenting groups of numerical data. A boxplot also indicates which observations, if any, might be considered outliers and is able to visually show different types of populations, without making any assumptions of the underlying statistical distribution. The spacing between the different parts of the box help indicate variance, skewness and identify outliers. The thick bar inside the colored box is the median of the observations while the box extends over the Interquartile Range of the observations. The whiskers extend up (down) to +/-1.5xIQR. Unexpected outcomes (e.g. protein coding read count distribution similar to pseudogene read count distribution) indicates poor sample quality.

Read and biotype saturation

The read and biotype saturation plots are a set of quality control charts that depict the read count saturation levels at several sequencing depths. Thus, they comprise a means of assessing whether the sequencing depth of an RNA-Seq experiment is sufficient in order to detect the biological features under investigation. These quality control charts are separated in two subgroups: the first subgroup (read saturation per biotype for all samples) is a set of plots, one for each biological feature (e.g. protein coding, pseudogene, lincRNA, etc.), that depict the number of detected features in different sequencing depths and for all samples in the same plot. The second subgroup (read saturation per sample for all biotypes) is a set of plots similar to the above, but with, there is one pair of plots with two panels for each sample, presenting all biological features. The left panel depicts the saturation levels for the less abundatnt features, while the right panel, the saturation for the more abundant features, as placing them all together would make the less abundant features indistinguishable. All the saturation plots should be interpreted as follows: if the read counts for a biotype tend to be saturated, the respective curve should tend to reach a plateau at higher depths. Otherwise, more sequencing is needed for the specific biotype.

Read saturation per biotype for all samples

Read saturation per sample for all biotypes

RNA-Seq reads noise

The read noise plots depict the percentage of biological features detected when subsampling the total number of reads. Very steep curves in read noise plots indicate that although the sequencing depth reaches its maximum, a relatively small percentage of total features is detected, indicating that the level of background noise is relatively high. Less steep RNA composition curves, indicate less noise. When a sample's curve deviate from the rest, it could indicate lower or higher quality, depending on the curves of the rest of the samples.

Correlation plots

The sample correlation plots depict the accordance among the RNA-Seq samples, as this is manifested through the read counts table used with the metaseqr pipeline, with two representations that both use the correlation matrix (a matrix which depicts all the pairwise correlations between each pair of samples) of the read counts matrix. The first is a correlation clustered heatmap which depicts the correlations among samples as color-scaled image and the hierarchical clustering tree depicts the grouping of the samples according to their correlation. Samples from the same group that are not clustered together provides an indication that there might be a quality problem with the dataset. The second is a 'correlogram' plot, where again the samples are hierarchically clustered and grouped but this time correlations are presented as ellipses inside each cell. Each cell represents a pairwise comparison and each correlation coefficient is represented by an ellipse whose 'diameter', direction and color depict the accordance for that pair of samples. Highly correlated samples are depicted as ellipses with narrow diameter, while poorly correlated samples are depicted as ellipses with wide diameters. Also, highly correlated samples are depicted as ellipses with a left-to-right upwards direction while poorly correlated samples are depicted as ellipses with a right-to-left upwards direction.

Correlation heatmap

Data correlogram

Pairwise scatterplots

The pairwise comparison plots are split in three parts: the upper diagonal consists of simple scatterplots for all pairwise sample comparisons, together with their Pearson correlation coefficient. It is a simple measure of between sample correlation using all the available data points instead of only the correlation matrix. The lower diagonal consists of mean-difference plots for all pairwise sample comparisons. A mean-difference plot (or a Bland-Altman plots) is a method of data plotting used in analyzing the agreement between two different assays/variables. In this graphical method the differences (or alternatively the ratios) between the two variables are plotted against the averages of the two. Such a plot is useful, for example, for analyzing data with strong correlation between x and y axes, when the (x,y) dots on the plot are close to the diagonal x=y. In this case, the value of the transformed variable X is about the same as x and y and the variable Y shows the difference between x and y. In both represantations, irregular shapes of the red smoother lines are an indication of poor correlation between samples or of other systematic bias sources, which is usually corrected through data normalization.

Boxplots

The boxplot comprises a means of summarizing the read counts distribution of a sample in the form of a bar with extending lines, as a commonly used way of graphically presenting groups of numerical data. A boxplot also indicates which observations, if any, might be considered outliers and is able to visually show different types of populations, without making any assumptions about the underlying statistical distribution. The spacings between the different parts of the box help indicate variance, skewness and identify outliers. The thick bar inside the colored box is the median of the observations while the box extends over the Interquartile Range of the observations. The whiskers extend up (down) to +/-1.5xIQR. Boxplots at similar levels indicate good quality of the normalization. If boxplots remain at different levels after normalization, maybe another normalization algorithm may have to be examined. The un-normalized boxplots show the need for data normalization in order for the data from different samples to follow the same underlying distribution and statistical testing becoming possible.

Boxplot of un-normalized data

Boxplot of normalized data

GC content bias

The GC-content bias plot is a quality control chart that shows the possible dependence of the read counts (in log2 scale) under a gene to the GC content percentage of that gene. In order for the statistical tests to be able to detect statistical significance which occurs due to real biological effects and not by other systematic biases present in the data (e.g. a possible GC-content bias), the latter should be accounted for by the applied normalization algorithm. Although the tests are performed for each gene across biological conditions one could assume that the GC content does not represent a bias, as it is the same for the tested gene across samples and conditions. However, Risso et al. (2011) showed that the GC-content could have an impact in the statistical testing procedure. The GC-content bias plot depicts the dependence of the read counts to the GC content before and after normalization. The smoothing lines for each sample, should be as 'straight' as possible after normalization. In addition, if the smoothing lines differ significantly between biological conditions, this would constitute a possible quality warning.

GC content bias un-normalized

GC content bias normalized

Gene/transcript length bias

The gene/transcript length bias plot is a quality control chart that shows the possible dependence of the read counts (in log2 scale) under a gene to the length that gene (whole gene or sum of exons depending on the analysis). In order for the statistical tests to be able to detect statistical significance which occurs due to real biological effects and not by other systematic biases present in the data (e.g. a possible length bias), the latter should be accounted for by the applied normalization algorithm. Although the tests are performed for each gene across bioogical conditions, one could assume that the gene length does not represent a bias as it's the same for the tested gene across samples and conditions. However, it has been shown in several studies that the gene length could have an impact on the statistical testing procedure. The length bias plot depicts the dependence of the read counts to the gene/transcript length before and after normalization. The smoothing lines for each sample, should be as 'straight' as possible after normalization. In addition, if the smoothing lines differ significantly among biological conditions, this would constitute a possible quality warning.

Gene/transcript length bias un-normalized

Gene/transcript length bias normalized

Mean-difference

A mean-difference plot (or a Bland-Altman plot) is a method of data plotting used in analyzing the agreement between two different assays/variables. In this graphical method the differences (or alternatively the ratios) between the two variables are plotted against the averages of the two. Such a plot is useful, for example, for analyzing data with strong correlation between x and y axes, when the (x,y) dots on the plot are close to the diagonal x=y. In this case, the value of the transformed variable X is about the same as x and y and the variable Y shows the difference between x and y. When the data cloud in a mean difference plot is centered around the horizontal zero line, this is an indication of good data quality and good normalization results. On the other hand, when the data cloud deviates from the center line or has a 'banana' shape, this constitutes an indication of systematic biases present in the data and that either the chosen normalization algorithm has not worked well, or that data are not normalized. The smoothing curve that traverses the data (red curve) summarizes the above trends.

Mean-difference plots for the replicates of ColVICreLtbR

Mean-difference plots for the replicates of Wt

Mean-difference plots for the replicates of TnfR1

Mean-difference plots for the replicates of ColVICreTnfR1

Mean-variance

The mean-variance plot comprises a graphical means of displaying a possible relationship between the means of gene expression (counts) values and their variances across replicates of the same biological condition. Thus data can be inspected for possible overdispersion (greater variability in a dataset than would be expected based on a given simple statistical model). In such plots for RNA-Seq data, overdispersion is usually manifested as increasing variance with increasing gene expression (counts) and it is summarized through a smoothing curve (red curve). The following is taken from the EDASeq package vignette: '...although the Poisson distribution is a natural and simple way to model count data, it has the limitation of assuming equality of the mean and variance. For this reason, the negative binomial distribution has been proposed as an alternative when the data show over-dispersion...' If overdispersion is not present, the data cloud is expected to be evenly scattered around the smoothing curve.

Mean-variance plots for the replicates of ColVICreLtbR

Mean-variance plots for the replicates of Wt

Mean-variance plots for the replicates of TnfR1

Mean-variance plots for the replicates of ColVICreTnfR1

Chromosome and biotype distribution of filtered genes

The chromosome and biotype distribution of filtered genes is a quality control chart with two rows and four panels: on the left panel of the first row, the bar chart depicts the numbers of filtered genes per chromosome (actual numbers shown above the bars). On the right panel of the first row, the bar chart depicts the numbers of filtered genes per biotype (actual numbers shown above the bars). On the left panel of the second row, the bar chart depicts the fraction of the filtered genes to the total genes per chromosome (actual percentages shown above the bars). On the right panel of the second row, the bar chart depicts the fraction of the filtered genes to the total genes per biotype (actual percentages shown above the bars). This plot should indicate possible quality problems when for example the filtered genes for a specific chromosome (or the fraction) is extremely higher than the rest. Generally, the fractions per chromosome should be uniform and the fractions per biotype should be proportional to the biotype fraction relative to the genome.

Volcano plots

A volcano plot is a scatterplot that is often used when analyzing high-throughput -omics data (e.g. microarray data, RNA-Seq data) to give an overview of interesting genes. The log2 fold change is plotted on the x-axis and the negative log10 p-value is plotted on the y-axis. A volcano plot combines the results of a statistical test (aka, p-values) with the magnitude of the change enabling quick visual identification of those genes that display large-magnitude changes that are also statistically significant. The horizontal dashed line sets the threshold for statistical significance, while the vertical dashed lines set the thresholds for biological significance. It should be noted that the volcano plots become harder to interpret when using more than one statistical algorithm and performing meta-analysis. This happens because the genes that have stronger evidence of being differentially expressed obtain lower p-values while the rest either remain at similar levels or obtain higher p-values. The result is a 'warped' volcano plot, with two main data clouds: one in the upper part of the plot, and one in the lower part of the plot. You can always zoom in when using interacting mode (the default).

Volcano plot for the contrast Wt_vs_ColVICreLtbR

Volcano plot for the contrast Wt_vs_ColVICreTnfR1

Volcano plot for the contrast Wt_vs_TnfR1

Volcano plot for the contrast TnfR1_vs_ColVICreLtbR

Volcano plot for the contrast TnfR1_vs_ColVICreTnfR1

Volcano plot for the contrast ColVICreTnfR1_vs_ColVICreLtbR

DEG heatmaps

The Differentially Expressed Genes (DEGs) heatmaps depict how well samples from different conditions cluster together according to their expression values after normalization and statistical testing, for each requested statistical contrast. If samples from the same biological condition do not cluster together, this would constitute a warning sign regarding the quality of the samples. In addition, DEG heatmaps provide an initial view of possible clusters of co-expressed genes.

DEG heatmap for the contrast Wt_vs_ColVICreLtbR

DEG heatmap for the contrast Wt_vs_ColVICreTnfR1

DEG heatmap for the contrast Wt_vs_TnfR1

DEG heatmap for the contrast TnfR1_vs_ColVICreLtbR

DEG heatmap for the contrast TnfR1_vs_ColVICreTnfR1

DEG heatmap for the contrast ColVICreTnfR1_vs_ColVICreLtbR

Chromosome and biotype distributions of DEGs

The chromosome and biotype distributions bar diagram for Differentially Expressed Genes (DEGs) is split in two panels: i) on the left panel DEGs are distributed per chromosome and the percentage of each chromosome in the genome is presented in grey bars, the percentage of DEGs in each chromosome is presented in red lined bars and the percentage of certain chromosomes in the distribution of DEGs is presented in solid red bars. ii) on the right panel, DEGs are distributed per biotype and the percentage of each biotype in the genome (i.e. in the whole set of features provided, for example, protein coding genes, non coding RNAs or pseudogenes) is presented in grey bars, the percentage of DEGs in each biotype is presented in blue lined bars and the percentage of each biotype in DEGs is presented in solid blue lines. The vertical green line separates the most abundant biotypes (on the left-hand side, corresponding to the left axis scale), from the rest (on the right-hand side, corresponding to the right axis scale). Otherwise, the lower abundance, biotypes would be indistinguishable.

Biotype distribution in DEG for the contrast Wt_vs_ColVICreLtbR

Biotype distribution in DEG for the contrast Wt_vs_ColVICreTnfR1

Biotype distribution in DEG for the contrast Wt_vs_TnfR1

Biotype distribution in DEG for the contrast TnfR1_vs_ColVICreLtbR

Biotype distribution in DEG for the contrast TnfR1_vs_ColVICreTnfR1

Biotype distribution in DEG for the contrast ColVICreTnfR1_vs_ColVICreLtbR

Get all the figures in png, pdf format.

Results

DEG table for the contrast Wt_vs_ColVICreLtbR

The following table presents the top 10% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast Wt_vs_ColVICreLtbR. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right.

chromosome	start	end	gene_id	gc_content	strand	gene_name	biotype	p-value_deseq	FDR_deseq	log2_normalized_fold_change_Wt_vs_ColVICreLtbR	log2_normalized_mean_counts_Wt	rpgm_normalized_mean_counts_Wt	log2_normalized_mean_counts_ColVICreLtbR	rpgm_normalized_mean_counts_ColVICreLtbR	log2_normalized_counts_GK3R152-Wt-W1	log2_normalized_counts_GK3R153-Wt-W2	log2_normalized_counts_GK3R154-Wt-W3	rpgm_normalized_counts_GK3R152-Wt-W1	rpgm_normalized_counts_GK3R153-Wt-W2	rpgm_normalized_counts_GK3R154-Wt-W3	log2_normalized_counts_GK3R161-ColVICreLtbR-L10	log2_normalized_counts_GK3R162-ColVICreLtbR-L11	log2_normalized_counts_GK3R163-ColVICreLtbR-L12	rpgm_normalized_counts_GK3R161-ColVICreLtbR-L10	rpgm_normalized_counts_GK3R162-ColVICreLtbR-L11	rpgm_normalized_counts_GK3R163-ColVICreLtbR-L12
chr9	3000282	3038313	ENSMUSG00000097312	0.3488	-	Gm26870	lincRNA	5.10e-29	8.36e-25	-7.552330	7.43e+00	2.82e-01	1.93e+00	1.24e-03	1.58e+00	9.40e+00	1.13e+01	5.32e-04	1.79e-01	6.67e-01	3.46e+00	2.32e+00	0.00e+00	2.66e-03	1.06e-03	0.00e+00
chr1	87124973	87127912	ENSMUSG00000036500	0.5670	+	Akp3	protein_coding	2.45e-24	2.01e-20	7.936638	6.67e-01	2.66e-04	6.45e+00	1.62e-01	1.00e+00	1.00e+00	0.00e+00	3.99e-04	3.99e-04	0.00e+00	1.00e+00	8.70e+00	9.66e+00	3.99e-04	1.65e-01	3.22e-01
chr11	53567379	53601967	ENSMUSG00000018395	0.4385	+	Kif3a	protein_coding	2.80e-16	1.53e-12	3.598618	7.43e+00	1.80e-02	1.10e+01	2.19e-01	7.29e+00	7.46e+00	7.52e+00	1.64e-02	1.83e-02	1.92e-02	1.11e+01	1.10e+01	1.10e+01	2.24e-01	2.22e-01	2.10e-01
chrX	162961992	162964599	ENSMUSG00000040808	0.4555	-	S100g	protein_coding	5.10e-14	2.09e-10	4.390056	6.65e+00	7.18e-02	1.02e+01	1.52e+00	6.75e+00	6.85e+00	6.34e+00	7.65e-02	8.15e-02	5.72e-02	9.38e+00	9.00e+00	1.23e+01	4.76e-01	3.66e-01	3.72e+00
chr10	79890853	79892656	ENSMUSG00000061780	0.5649	+	Cfd	protein_coding	9.06e-13	2.97e-09	6.942515	0.00e+00	0.00e+00	5.01e+00	9.21e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	7.32e+00	7.70e+00	0.00e+00	1.20e-01	1.56e-01
chr6	78422711	78428667	ENSMUSG00000059654	0.3937	+	Reg1	protein_coding	1.50e-12	4.10e-09	3.613728	5.87e+00	5.43e-02	9.09e+00	6.72e-01	6.97e+00	4.00e+00	6.63e+00	8.52e-02	1.03e-02	6.74e-02	6.32e+00	1.05e+01	1.05e+01	5.43e-02	9.66e-01	9.97e-01
chr11	31357307	31370074	ENSMUSG00000020303	0.4995	-	Stc2	protein_coding	2.17e-11	5.09e-08	-4.076307	6.39e+00	1.43e-01	5.59e+00	8.33e-03	3.81e+00	3.91e+00	1.15e+01	1.97e-03	2.12e-03	4.25e-01	6.67e+00	4.95e+00	5.13e+00	1.53e-02	4.54e-03	5.15e-03
chr9	108403611	108428484	ENSMUSG00000047220	0.4314	-	Ccdc36	protein_coding	2.18e-10	4.47e-07	2.861077	8.35e+00	1.35e-01	1.12e+01	9.85e-01	8.27e+00	8.49e+00	8.28e+00	1.28e-01	1.49e-01	1.28e-01	1.10e+01	1.10e+01	1.16e+01	8.47e-01	8.60e-01	1.25e+00
chr14	51763878	51773590	ENSMUSG00000060615	0.4375	-	Ang4	protein_coding	1.85e-09	3.38e-06	2.370417	8.84e+00	3.29e-01	1.12e+01	1.70e+00	8.50e+00	8.69e+00	9.32e+00	2.52e-01	2.89e-01	4.47e-01	1.15e+01	1.12e+01	1.10e+01	2.01e+00	1.63e+00	1.48e+00
chr8	21702519	21703645	ENSMUSG00000058618	0.4295	-	AY761184	protein_coding	2.47e-09	4.06e-06	2.357894	9.69e+00	6.29e-01	1.21e+01	3.23e+00	9.13e+00	9.80e+00	1.01e+01	4.12e-01	6.52e-01	8.24e-01	1.23e+01	1.22e+01	1.18e+01	3.60e+00	3.46e+00	2.62e+00
chr5	21543559	21575904	ENSMUSG00000039883	0.4349	+	Lrrc17	protein_coding	3.04e-09	4.53e-06	2.572860	8.08e+00	8.90e-02	1.07e+01	5.31e-01	8.01e+00	7.94e+00	8.30e+00	8.42e-02	8.00e-02	1.03e-01	1.06e+01	1.05e+01	1.09e+01	5.00e-01	4.78e-01	6.17e-01
chr2	98666547	98667301	ENSMUSG00000075014	0.3563	-	Gm10800	protein_coding	3.60e-09	4.92e-06	-5.372554	4.45e+00	7.63e-02	7.74e-01	1.06e-03	0.00e+00	5.39e+00	7.95e+00	0.00e+00	3.27e-02	1.96e-01	0.00e+00	0.00e+00	2.32e+00	0.00e+00	0.00e+00	3.19e-03
chr8	21325887	21327020	ENSMUSG00000074437	0.4321	-	Defa29	protein_coding	5.06e-09	6.39e-06	2.237039	9.57e+00	5.80e-01	1.18e+01	2.74e+00	9.19e+00	9.37e+00	1.01e+01	4.27e-01	4.84e-01	8.29e-01	1.22e+01	1.19e+01	1.15e+01	3.36e+00	2.79e+00	2.06e+00
chr7	72648757	72649311	ENSMUSG00000081895	0.4757	-	Rpl17-ps10	processed_pseudogene	1.16e-08	1.36e-05	-2.613555	9.66e+00	6.63e-01	6.33e+00	1.08e-01	9.76e+00	9.22e+00	1.00e+01	6.91e-01	4.74e-01	8.24e-01	4.09e+00	8.15e+00	6.74e+00	1.28e-02	2.26e-01	8.45e-02
chr11	61653265	61672784	ENSMUSG00000004837	0.5285	+	Grap	protein_coding	1.65e-08	1.81e-05	-2.862330	9.03e+00	1.53e-01	6.03e+00	2.08e-02	9.18e+00	8.74e+00	9.15e+00	1.69e-01	1.24e-01	1.65e-01	6.21e+00	6.75e+00	5.13e+00	2.13e-02	3.12e-02	9.90e-03
chr1	173274382	173277777	ENSMUSG00000079180	0.4031	-	Mptx2	protein_coding	3.37e-08	3.46e-05	2.377689	1.03e+01	1.01e+00	1.27e+01	5.26e+00	9.77e+00	9.86e+00	1.11e+01	6.56e-01	6.96e-01	1.68e+00	1.20e+01	1.30e+01	1.31e+01	3.03e+00	6.14e+00	6.62e+00
chr8	21455445	21456560	ENSMUSG00000079114	0.4265	-	Gm7849	protein_coding	7.26e-08	7.01e-05	2.203645	1.12e+01	1.78e+00	1.34e+01	8.20e+00	1.09e+01	1.10e+01	1.17e+01	1.46e+00	1.50e+00	2.39e+00	1.39e+01	1.33e+01	1.29e+01	1.15e+01	7.37e+00	5.68e+00
chr6	119479668	119482630	ENSMUSG00000030019	0.5491	+	Fbxl14	protein_coding	1.57e-07	1.43e-04	-2.120636	1.07e+01	6.42e-01	8.15e+00	1.47e-01	1.08e+01	1.05e+01	1.07e+01	7.13e-01	5.47e-01	6.67e-01	6.39e+00	9.24e+00	8.81e+00	3.23e-02	2.35e-01	1.75e-01
chr17	28558210	28560766	ENSMUSG00000024225	0.5264	-	Clps	protein_coding	1.86e-07	1.61e-04	2.394957	6.05e+00	5.05e-02	8.50e+00	2.69e-01	5.70e+00	5.83e+00	6.63e+00	3.77e-02	4.14e-02	7.24e-02	8.69e+00	8.55e+00	8.26e+00	3.05e-01	2.76e-01	2.25e-01
chr6	40471352	40484700	ENSMUSG00000029911	0.3942	+	Ssbp1	protein_coding	2.21e-07	1.81e-04	-2.000000	9.94e+00	9.32e-02	7.77e+00	2.32e-02	1.02e+01	9.71e+00	9.93e+00	1.09e-01	7.91e-02	9.18e-02	6.67e+00	8.20e+00	8.43e+00	9.53e-03	2.78e-02	3.24e-02
chr6	142785204	142804502	ENSMUSG00000048473	0.4434	-	Sult6b2	protein_coding	2.76e-07	2.16e-04	3.167945	4.32e+00	4.50e-03	7.17e+00	4.18e-02	4.81e+00	2.58e+00	5.55e+00	4.67e-03	8.65e-04	7.95e-03	4.58e+00	8.43e+00	8.49e+00	3.98e-03	5.95e-02	6.19e-02
chr9	64173375	64178666	ENSMUSG00000032399	0.4271	+	Rpl4	protein_coding	3.25e-07	2.36e-04	-2.264992	1.16e+01	1.10e+00	9.37e+00	2.29e-01	1.19e+01	1.14e+01	1.16e+01	1.29e+00	9.10e-01	1.11e+00	9.27e+00	9.48e+00	9.38e+00	2.12e-01	2.46e-01	2.28e-01
chr6	48739054	48743795	ENSMUSG00000090019	0.5101	+	Gimap1	protein_coding	3.31e-07	2.36e-04	-2.258221	1.01e+01	2.08e-01	7.88e+00	4.34e-02	1.05e+01	9.78e+00	1.00e+01	2.70e-01	1.61e-01	1.93e-01	8.16e+00	7.74e+00	7.73e+00	5.24e-02	3.91e-02	3.87e-02
chr8	21593375	21594508	ENSMUSG00000079113	0.4250	-	Gm7861	protein_coding	4.81e-07	3.29e-04	2.209641	1.19e+01	2.89e+00	1.41e+01	1.34e+01	1.17e+01	1.17e+01	1.23e+01	2.36e+00	2.51e+00	3.80e+00	1.46e+01	1.40e+01	1.37e+01	1.82e+01	1.21e+01	9.79e+00
chr7	25897620	25926624	ENSMUSG00000030483	0.4536	+	Cyp2b10	protein_coding	6.21e-07	4.08e-04	2.547943	5.18e+00	1.41e-02	7.86e+00	8.42e-02	5.75e+00	4.00e+00	5.78e+00	1.84e-02	5.20e-03	1.87e-02	7.61e+00	8.48e+00	7.48e+00	6.76e-02	1.23e-01	6.14e-02
chr19	11443553	11463549	ENSMUSG00000056290	0.3871	+	Ms4a4b	protein_coding	8.02e-07	4.90e-04	-2.040275	9.62e+00	1.86e-01	7.55e+00	4.50e-02	9.74e+00	9.57e+00	9.54e+00	2.02e-01	1.79e-01	1.76e-01	7.24e+00	7.53e+00	7.89e+00	3.55e-02	4.35e-02	5.61e-02
chr8	21095074	21096050	ENSMUSG00000061958	0.4289	-	Gm14851	protein_coding	8.07e-07	4.90e-04	1.882408	1.00e+01	8.58e-01	1.19e+01	3.16e+00	9.62e+00	9.95e+00	1.05e+01	6.28e-01	7.85e-01	1.16e+00	1.21e+01	1.21e+01	1.16e+01	3.43e+00	3.55e+00	2.51e+00
chr3	98222156	98236748	ENSMUSG00000027876	0.4523	+	Reg4	protein_coding	9.04e-07	5.30e-04	2.236179	6.63e+00	6.15e-02	8.90e+00	2.92e-01	6.88e+00	6.17e+00	6.85e+00	7.15e-02	4.34e-02	6.96e-02	8.99e+00	8.90e+00	8.81e+00	3.10e-01	2.92e-01	2.74e-01
chr19	39269405	39330713	ENSMUSG00000003053	0.3735	+	Cyp2c29	protein_coding	1.35e-06	7.64e-04	4.922832	6.67e-01	1.15e-04	5.11e+00	6.89e-03	2.00e+00	0.00e+00	0.00e+00	3.46e-04	0.00e+00	0.00e+00	2.81e+00	7.01e+00	5.52e+00	6.93e-04	1.48e-02	5.19e-03
chr10	86692119	86693095	ENSMUSG00000084899	0.4063	-	Gm15344	processed_transcript	1.74e-06	9.54e-04	-2.083909	9.50e+00	5.92e-01	7.03e+00	1.39e-01	9.69e+00	9.00e+00	9.80e+00	6.58e-01	4.07e-01	7.11e-01	5.43e+00	8.32e+00	7.35e+00	3.35e-02	2.54e-01	1.29e-01
chr2	22587291	22587962	ENSMUSG00000083863	0.3839	-	Gm13341	unprocessed_pseudogene	1.84e-06	9.74e-04	2.141877	7.52e+00	1.46e-01	9.66e+00	6.49e-01	7.60e+00	7.37e+00	7.61e+00	1.54e-01	1.31e-01	1.55e-01	9.41e+00	9.64e+00	9.92e+00	5.43e-01	6.35e-01	7.70e-01
chr3	107963696	107969283	ENSMUSG00000004038	0.4961	-	Gstm3	protein_coding	2.14e-06	1.10e-03	2.334575	5.68e+00	2.95e-02	7.80e+00	1.51e-01	5.67e+00	5.25e+00	6.13e+00	2.83e-02	2.10e-02	3.91e-02	6.63e+00	8.85e+00	7.92e+00	5.55e-02	2.61e-01	1.37e-01
chr7	110627661	110629820	ENSMUSG00000030790	0.5301	+	Adm	protein_coding	2.21e-06	1.10e-03	-2.680287	6.54e+00	4.09e-02	3.24e+00	6.12e-03	8.15e+00	5.75e+00	5.73e+00	8.96e-02	1.68e-02	1.65e-02	5.25e+00	4.46e+00	0.00e+00	1.17e-02	6.65e-03	0.00e+00
chr5	20758663	20882124	ENSMUSG00000039987	0.3960	-	Phtf2	protein_coding	2.48e-06	1.14e-03	-2.488191	8.11e+00	1.76e-02	5.56e+00	3.08e-03	8.34e+00	8.02e+00	7.98e+00	2.05e-02	1.63e-02	1.60e-02	6.07e+00	5.67e+00	4.95e+00	4.18e-03	3.17e-03	1.90e-03
chr19	39113898	39187072	ENSMUSG00000067229	0.4017	+	Cyp2c66	protein_coding	2.51e-06	1.14e-03	3.153130	3.98e+00	1.71e-03	6.63e+00	1.61e-02	4.32e+00	3.91e+00	3.70e+00	2.16e-03	1.59e-03	1.36e-03	4.86e+00	8.11e+00	6.93e+00	3.18e-03	3.13e-02	1.38e-02
chr11	5969644	6066362	ENSMUSG00000057897	0.5229	-	Camk2b	protein_coding	2.51e-06	1.14e-03	2.677023	4.72e+00	2.85e-03	7.43e+00	1.88e-02	4.46e+00	4.17e+00	5.52e+00	2.16e-03	1.75e-03	4.64e-03	7.13e+00	7.07e+00	8.11e+00	1.43e-02	1.37e-02	2.83e-02
chr17	39843013	39846341	ENSMUSG00000097971	0.6912	+	Gm26917	lincRNA	2.70e-06	1.18e-03	2.725732	6.60e+00	8.84e-02	9.37e+00	5.89e-01	6.29e+00	7.86e+00	5.64e+00	5.70e-02	1.72e-01	3.63e-02	8.78e+00	8.76e+00	1.06e+01	3.26e-01	3.21e-01	1.12e+00
chr11	76406952	76416292	ENSMUSG00000020843	0.4669	+	Timm22	protein_coding	2.74e-06	1.18e-03	2.015710	9.21e+00	1.05e-01	1.12e+01	4.24e-01	9.03e+00	9.20e+00	9.39e+00	9.23e-02	1.04e-01	1.18e-01	1.10e+01	1.11e+01	1.15e+01	3.71e-01	3.98e-01	5.03e-01
chr1	83116766	83119167	ENSMUSG00000026166	0.3926	+	Ccl20	protein_coding	3.31e-06	1.39e-03	-2.028051	8.00e+00	1.12e-01	5.79e+00	2.72e-02	7.67e+00	8.26e+00	8.07e+00	8.81e-02	1.32e-01	1.16e-01	4.64e+00	6.23e+00	6.51e+00	1.04e-02	3.21e-02	3.90e-02
chr8	68880491	68907448	ENSMUSG00000015568	0.4217	+	Lpl	protein_coding	3.43e-06	1.41e-03	3.241478	4.24e+00	2.09e-03	7.40e+00	2.08e-02	4.32e+00	4.70e+00	3.70e+00	2.13e-03	2.80e-03	1.35e-03	6.49e+00	7.67e+00	8.05e+00	9.98e-03	2.27e-02	2.96e-02
chr3	108012255	108017973	ENSMUSG00000058135	0.5130	-	Gstm1	protein_coding	4.16e-06	1.66e-03	2.410870	5.90e+00	3.79e-02	8.28e+00	2.04e-01	6.15e+00	6.51e+00	5.04e+00	4.15e-02	5.33e-02	1.90e-02	7.33e+00	8.97e+00	8.55e+00	9.48e-02	2.97e-01	2.21e-01
chr2	174284320	174346744	ENSMUSG00000027523	0.4795	+	Gnas	protein_coding	4.75e-06	1.85e-03	-1.659818	1.08e+01	8.66e-02	8.81e+00	2.74e-02	1.09e+01	1.08e+01	1.07e+01	9.34e-02	8.58e-02	8.06e-02	7.20e+00	9.54e+00	9.68e+00	7.00e-03	3.57e-02	3.94e-02
chr5	90490737	90508907	ENSMUSG00000054932	0.4053	+	Afp	protein_coding	5.04e-06	1.90e-03	3.979822	9.36e-01	3.99e-04	5.09e+00	9.24e-03	0.00e+00	0.00e+00	2.81e+00	0.00e+00	0.00e+00	1.20e-03	3.32e+00	6.43e+00	5.52e+00	1.80e-03	1.70e-02	8.98e-03
chr7	29256323	29281912	ENSMUSG00000074227	0.4793	-	Spint2	protein_coding	5.10e-06	1.90e-03	-1.617517	1.10e+01	2.80e-01	8.73e+00	9.13e-02	1.06e+01	1.13e+01	1.10e+01	2.13e-01	3.51e-01	2.76e-01	6.38e+00	9.80e+00	1.00e+01	1.12e-02	1.22e-01	1.40e-01
chr5	31240864	31251566	ENSMUSG00000029148	0.4782	+	Nrbp1	protein_coding	5.33e-06	1.92e-03	1.952911	8.28e+00	3.37e-02	1.02e+01	1.31e-01	8.01e+00	8.43e+00	8.41e+00	2.75e-02	3.70e-02	3.65e-02	1.01e+01	1.01e+01	1.05e+01	1.20e-01	1.21e-01	1.51e-01
chr8	33652523	33698163	ENSMUSG00000031584	0.4579	+	Gsr	protein_coding	5.38e-06	1.92e-03	-1.599147	1.03e+01	2.79e-01	8.50e+00	9.21e-02	9.78e+00	1.07e+01	1.04e+01	1.89e-01	3.65e-01	2.84e-01	7.33e+00	8.72e+00	9.45e+00	3.46e-02	9.11e-02	1.51e-01
chr8	21201561	21202539	ENSMUSG00000079116	0.4188	+	Gm15293	protein_coding	6.99e-06	2.44e-03	2.168390	7.10e+00	1.03e-01	9.24e+00	4.64e-01	6.71e+00	7.40e+00	7.17e+00	7.72e-02	1.25e-01	1.06e-01	9.11e+00	8.83e+00	9.77e+00	4.09e-01	3.37e-01	6.47e-01
chr11	97159714	97187881	ENSMUSG00000001440	0.4411	-	Kpnb1	protein_coding	7.32e-06	2.46e-03	-2.060542	1.01e+01	2.04e-01	8.04e+00	4.88e-02	1.03e+01	9.77e+00	1.02e+01	2.33e-01	1.59e-01	2.21e-01	8.30e+00	8.15e+00	7.68e+00	5.74e-02	5.19e-02	3.73e-02
chr18	64340364	64398488	ENSMUSG00000045991	0.4448	+	Onecut2	protein_coding	7.35e-06	2.46e-03	2.826668	4.90e+00	2.62e-03	7.74e+00	1.90e-02	5.64e+00	3.58e+00	5.46e+00	3.74e-03	8.39e-04	3.28e-03	6.61e+00	7.92e+00	8.69e+00	7.40e-03	1.84e-02	3.13e-02
chr1	9941959	9944118	ENSMUSG00000098234	0.4440	-	Snhg6	lincRNA	8.39e-06	2.73e-03	-1.603341	9.10e+00	4.18e-01	7.03e+00	1.37e-01	9.17e+00	9.24e+00	8.90e+00	4.36e-01	4.58e-01	3.61e-01	5.09e+00	7.92e+00	8.07e+00	2.50e-02	1.83e-01	2.03e-01
chr1	185284726	185329396	ENSMUSG00000026618	0.4541	-	Iars2	protein_coding	8.48e-06	2.73e-03	-1.704743	8.79e+00	5.27e-02	6.90e+00	1.61e-02	9.11e+00	8.57e+00	8.68e+00	6.52e-02	4.49e-02	4.82e-02	5.75e+00	7.37e+00	7.59e+00	6.26e-03	1.94e-02	2.27e-02
chr11	69803603	69805624	ENSMUSG00000089876	0.5786	-	Tmem102	protein_coding	1.18e-05	3.67e-03	3.748461	3.04e+00	5.79e-03	6.46e+00	8.77e-02	2.81e+00	3.00e+00	3.32e+00	4.74e-03	5.53e-03	7.11e-03	5.36e+00	6.23e+00	7.78e+00	3.16e-02	5.85e-02	1.73e-01
chr8	21297439	21298375	ENSMUSG00000074439	0.4130	+	Defa5	protein_coding	1.19e-05	3.67e-03	1.753073	1.07e+01	1.25e+00	1.25e+01	4.22e+00	1.03e+01	1.06e+01	1.11e+01	9.48e-01	1.18e+00	1.63e+00	1.28e+01	1.22e+01	1.24e+01	5.19e+00	3.40e+00	4.09e+00
chr1	85793441	85851576	ENSMUSG00000036707	0.4152	+	Cab39	protein_coding	1.24e-05	3.77e-03	-1.728807	1.04e+01	1.89e-01	8.68e+00	5.68e-02	1.03e+01	1.07e+01	1.04e+01	1.66e-01	2.19e-01	1.80e-01	8.40e+00	8.58e+00	9.08e+00	4.56e-02	5.17e-02	7.31e-02
chrX	94188707	94212862	ENSMUSG00000035150	0.4136	-	Eif2s3x	protein_coding	1.30e-05	3.88e-03	-2.059124	8.44e+00	5.83e-02	6.36e+00	1.39e-02	8.58e+00	8.49e+00	8.25e+00	6.39e-02	6.02e-02	5.08e-02	6.11e+00	6.73e+00	6.25e+00	1.14e-02	1.76e-02	1.26e-02
chr17	75435905	75529043	ENSMUSG00000071042	0.4183	+	Rasgrp3	protein_coding	1.36e-05	3.99e-03	-1.721506	8.45e+00	1.01e-01	6.60e+00	3.06e-02	8.51e+00	8.41e+00	8.44e+00	1.06e-01	9.84e-02	1.00e-01	5.86e+00	6.55e+00	7.38e+00	1.65e-02	2.70e-02	4.82e-02
chr8	21427411	21428391	ENSMUSG00000094662	0.4139	+	Defa36	protein_coding	1.51e-05	4.34e-03	1.806348	1.15e+01	2.13e+00	1.33e+01	7.44e+00	1.12e+01	1.14e+01	1.18e+01	1.69e+00	1.98e+00	2.71e+00	1.36e+01	1.31e+01	1.32e+01	9.26e+00	6.30e+00	6.76e+00
chr15	86057695	86137634	ENSMUSG00000035900	0.5263	+	Gramd4	protein_coding	1.57e-05	4.44e-03	-1.346450	9.64e+00	5.48e-02	7.79e+00	2.15e-02	9.66e+00	9.82e+00	9.43e+00	5.53e-02	6.20e-02	4.72e-02	5.86e+00	8.41e+00	9.10e+00	3.91e-03	2.32e-02	3.75e-02
chr14	70583296	70599835	ENSMUSG00000022095	0.5158	-	Fam160b2	protein_coding	1.65e-05	4.58e-03	-1.910203	8.66e+00	1.69e-01	7.02e+00	4.47e-02	9.95e+00	7.60e+00	8.41e+00	3.30e-01	6.43e-02	1.13e-01	7.30e+00	7.36e+00	6.39e+00	5.23e-02	5.43e-02	2.76e-02
chr3	108793176	108840526	ENSMUSG00000027882	0.4246	-	Stxbp3	protein_coding	1.82e-05	4.97e-03	-1.789782	9.55e+00	7.00e-02	7.49e+00	2.02e-02	9.59e+00	9.48e+00	9.57e+00	7.21e-02	6.68e-02	7.13e-02	6.23e+00	8.47e+00	7.78e+00	6.94e-03	3.31e-02	2.05e-02
chr4	63367125	63403354	ENSMUSG00000039158	0.5253	-	Akna	protein_coding	1.94e-05	5.23e-03	-1.753593	8.83e+00	1.89e-01	7.57e+00	5.59e-02	1.05e+01	7.71e+00	8.30e+00	4.15e-01	6.07e-02	9.16e-02	7.80e+00	7.69e+00	7.21e+00	6.47e-02	6.01e-02	4.29e-02
chr5	145854426	145879964	ENSMUSG00000056035	0.4138	-	Cyp3a11	protein_coding	2.01e-05	5.31e-03	1.998693	7.92e+00	8.73e-02	9.70e+00	3.50e-01	8.91e+00	7.24e+00	7.61e+00	1.52e-01	4.76e-02	6.19e-02	8.07e+00	1.09e+01	1.01e+01	8.48e-02	6.19e-01	3.46e-01
chr4	45316613	45342732	ENSMUSG00000028322	0.4424	-	Exosc3	protein_coding	2.29e-05	5.96e-03	-1.785383	8.39e+00	1.18e-01	5.89e+00	3.39e-02	8.51e+00	8.39e+00	8.28e+00	1.27e-01	1.18e-01	1.08e-01	3.46e+00	7.39e+00	6.83e+00	3.51e-03	5.86e-02	3.97e-02
chr2	174760619	174784042	ENSMUSG00000027524	0.4824	+	Edn3	protein_coding	2.36e-05	6.05e-03	-1.638058	9.55e+00	2.26e-01	7.87e+00	7.25e-02	9.92e+00	9.23e+00	9.50e+00	2.87e-01	1.78e-01	2.15e-01	7.21e+00	8.16e+00	8.24e+00	4.35e-02	8.47e-02	8.94e-02
chr11	110025634	110095978	ENSMUSG00000041828	0.3985	-	Abca8a	protein_coding	2.47e-05	6.24e-03	2.861480	4.55e+00	2.76e-03	7.40e+00	2.09e-02	4.81e+00	4.58e+00	4.25e+00	3.29e-03	2.81e-03	2.20e-03	7.20e+00	7.19e+00	7.80e+00	1.78e-02	1.77e-02	2.71e-02
chr5	95956951	95961068	ENSMUSG00000023078	0.3941	+	Cxcl13	protein_coding	2.60e-05	6.37e-03	-1.773103	9.27e+00	3.03e-01	7.30e+00	8.84e-02	9.02e+00	9.53e+00	9.26e+00	2.52e-01	3.59e-01	2.99e-01	6.11e+00	8.04e+00	7.75e+00	3.31e-02	1.28e-01	1.05e-01
chr15	83153494	83172592	ENSMUSG00000018042	0.5517	-	Cyb5r3	protein_coding	2.67e-05	6.37e-03	1.789792	9.51e+00	1.16e-01	1.13e+01	4.01e-01	9.63e+00	9.36e+00	9.55e+00	1.25e-01	1.04e-01	1.19e-01	1.12e+01	1.13e+01	1.14e+01	3.70e-01	4.02e-01	4.32e-01
chr13	8885501	8892451	ENSMUSG00000058258	0.4074	+	Idi1	protein_coding	2.68e-05	6.37e-03	-1.474595	9.65e+00	1.82e-01	7.66e+00	6.55e-02	9.54e+00	9.81e+00	9.59e+00	1.68e-01	2.04e-01	1.75e-01	5.61e+00	8.62e+00	8.74e+00	1.09e-02	8.89e-02	9.66e-02
chr15	82790107	82794245	ENSMUSG00000022445	0.5197	-	Cyp2d26	protein_coding	2.71e-05	6.37e-03	1.987314	6.41e+00	6.39e-02	8.39e+00	2.56e-01	6.61e+00	6.13e+00	6.48e+00	7.33e-02	5.21e-02	6.65e-02	8.18e+00	8.68e+00	8.31e+00	2.18e-01	3.10e-01	2.39e-01
chr2	164940780	164955850	ENSMUSG00000017737	0.5213	+	Mmp9	protein_coding	2.72e-05	6.37e-03	2.459432	5.37e+00	8.71e-03	7.80e+00	4.89e-02	5.64e+00	5.00e+00	5.46e+00	1.04e-02	6.59e-03	9.14e-03	7.22e+00	8.02e+00	8.15e+00	3.14e-02	5.50e-02	6.01e-02
chr2	121439059	121456781	ENSMUSG00000046110	0.4888	-	Serinc4	protein_coding	2.78e-05	6.43e-03	-2.107077	7.82e+00	1.17e-02	5.71e+00	2.68e-03	8.04e+00	7.52e+00	7.89e+00	1.36e-02	9.39e-03	1.22e-02	5.39e+00	5.81e+00	5.93e+00	2.11e-03	2.84e-03	3.10e-03
chr7	126699773	126707787	ENSMUSG00000030707	0.5471	-	Coro1a	protein_coding	2.89e-05	6.57e-03	-1.750996	1.10e+01	2.62e-01	9.20e+00	7.78e-02	1.11e+01	1.11e+01	1.07e+01	2.87e-01	2.81e-01	2.18e-01	8.85e+00	9.59e+00	9.15e+00	5.98e-02	9.97e-02	7.38e-02
chr6	108107028	108185582	ENSMUSG00000030101	0.4304	-	Sumf1	protein_coding	3.00e-05	6.73e-03	-2.120702	8.23e+00	5.74e-02	6.05e+00	1.31e-02	8.61e+00	7.84e+00	8.23e+00	7.33e-02	4.27e-02	5.62e-02	6.36e+00	6.51e+00	5.29e+00	1.52e-02	1.69e-02	7.12e-03
chr8	105297663	105305370	ENSMUSG00000014859	0.5016	+	E2f4	protein_coding	3.18e-05	7.04e-03	-2.694972	7.03e+00	4.10e-02	4.16e+00	6.06e-03	7.26e+00	6.77e+00	7.06e+00	4.76e-02	3.39e-02	4.14e-02	5.00e+00	4.32e+00	3.17e+00	9.72e-03	5.96e-03	2.51e-03
chr1	86526726	86530712	ENSMUSG00000026238	0.5714	+	Ptma	protein_coding	3.25e-05	7.10e-03	-1.283861	1.13e+01	1.01e+00	9.71e+00	4.16e-01	1.14e+01	1.12e+01	1.12e+01	1.10e+00	9.54e-01	9.87e-01	8.59e+00	9.70e+00	1.08e+01	1.57e-01	3.40e-01	7.51e-01
chr8	5083219	5105351	ENSMUSG00000023073	0.3631	-	Slc10a2	protein_coding	3.32e-05	7.16e-03	-1.504163	8.69e+00	1.03e-01	7.11e+00	3.63e-02	9.17e+00	8.83e+00	8.07e+00	1.37e-01	1.09e-01	6.39e-02	6.13e+00	7.50e+00	7.70e+00	1.65e-02	4.29e-02	4.94e-02
chr3	132881745	132950291	ENSMUSG00000040998	0.4297	-	Npnt	protein_coding	3.40e-05	7.23e-03	3.184425	3.43e+00	1.93e-03	6.58e+00	1.91e-02	3.17e+00	3.81e+00	3.32e+00	1.54e-03	2.50e-03	1.73e-03	6.07e+00	6.58e+00	7.10e+00	1.27e-02	1.83e-02	2.62e-02
chr7	80227147	80232813	ENSMUSG00000030538	0.5137	-	Cib1	protein_coding	3.52e-05	7.40e-03	1.688699	9.68e+00	1.19e-01	1.14e+01	3.83e-01	9.45e+00	9.94e+00	9.64e+00	1.01e-01	1.41e-01	1.14e-01	1.15e+01	1.12e+01	1.13e+01	4.28e-01	3.45e-01	3.75e-01
chr1	128520073	128521460	ENSMUSG00000100078	0.4784	-	Gm6170	processed_pseudogene	3.56e-05	7.40e-03	-2.445917	7.14e+00	1.12e-01	4.49e+00	1.99e-02	7.19e+00	6.89e+00	7.32e+00	1.16e-01	9.41e-02	1.27e-01	3.46e+00	5.43e+00	4.58e+00	7.97e-03	3.35e-02	1.83e-02
chr8	21665797	21666732	ENSMUSG00000063206	0.4071	+	Defa34	protein_coding	3.78e-05	7.75e-03	1.745457	1.15e+01	2.13e+00	1.32e+01	7.15e+00	1.10e+01	1.15e+01	1.18e+01	1.57e+00	2.13e+00	2.70e+00	1.35e+01	1.30e+01	1.32e+01	8.39e+00	5.98e+00	7.09e+00
chr19	32620005	32667187	ENSMUSG00000024899	0.4359	+	Papss2	protein_coding	4.24e-05	8.59e-03	1.890861	8.22e+00	1.04e-01	1.00e+01	3.86e-01	8.35e+00	8.13e+00	8.19e+00	1.13e-01	9.71e-02	1.02e-01	9.40e+00	1.03e+01	1.04e+01	2.35e-01	4.39e-01	4.85e-01
chr18	82475146	82585637	ENSMUSG00000041607	0.4925	+	Mbp	protein_coding	4.39e-05	8.79e-03	1.603395	6.79e+00	8.88e-03	7.89e+00	2.72e-02	7.12e+00	6.51e+00	6.74e+00	1.10e-02	7.18e-03	8.46e-03	9.56e+00	6.87e+00	7.25e+00	6.02e-02	9.26e-03	1.20e-02
chr8	21065038	21065996	ENSMUSG00000061845	0.4150	+	Defa35	protein_coding	4.59e-05	9.06e-03	1.889791	8.17e+00	2.17e-01	1.00e+01	8.07e-01	7.77e+00	8.42e+00	8.30e+00	1.62e-01	2.55e-01	2.34e-01	9.79e+00	9.72e+00	1.06e+01	6.59e-01	6.29e-01	1.13e+00
chr2	121439010	121444278	ENSMUSG00000027246	0.4881	-	Ell3	protein_coding	4.72e-05	9.22e-03	-2.063503	7.69e+00	7.08e-02	5.62e+00	1.67e-02	7.86e+00	7.42e+00	7.81e+00	7.87e-02	5.79e-02	7.59e-02	5.32e+00	5.61e+00	5.93e+00	1.33e-02	1.63e-02	2.04e-02
chr16	20668313	20692884	ENSMUSG00000045983	0.4855	+	Eif4g1	protein_coding	5.15e-05	9.93e-03	1.833268	1.09e+01	1.03e-01	1.27e+01	3.66e-01	1.07e+01	1.10e+01	1.11e+01	9.00e-02	1.05e-01	1.13e-01	1.28e+01	1.22e+01	1.31e+01	3.85e-01	2.50e-01	4.62e-01
chr8	21565386	21566349	ENSMUSG00000065956	0.4118	+	Defa37	protein_coding	5.90e-05	1.13e-02	1.762792	1.21e+01	3.35e+00	1.39e+01	1.14e+01	1.18e+01	1.20e+01	1.25e+01	2.61e+00	3.14e+00	4.30e+00	1.41e+01	1.38e+01	1.38e+01	1.33e+01	1.05e+01	1.03e+01
chr6	42245935	42250447	ENSMUSG00000029864	0.4709	+	Gstk1	protein_coding	6.07e-05	1.14e-02	1.632370	8.81e+00	9.65e-02	1.05e+01	3.00e-01	8.72e+00	8.53e+00	9.19e+00	8.85e-02	7.78e-02	1.23e-01	1.05e+01	1.03e+01	1.06e+01	3.11e-01	2.61e-01	3.27e-01
chr17	34969190	34972156	ENSMUSG00000091971	0.5895	-	Hspa1a	protein_coding	6.46e-05	1.19e-02	2.473931	5.07e+00	1.93e-02	7.28e+00	1.10e-01	5.49e+00	5.46e+00	4.25e+00	2.43e-02	2.38e-02	9.95e-03	5.78e+00	8.46e+00	7.59e+00	2.99e-02	1.94e-01	1.06e-01
chr11	102194432	102230166	ENSMUSG00000008855	0.5497	-	Hdac5	protein_coding	6.47e-05	1.19e-02	1.905535	5.96e+00	2.08e-03	7.87e+00	7.86e-03	6.69e+00	6.34e+00	4.86e+00	3.03e-03	2.37e-03	8.30e-04	8.73e+00	7.99e+00	6.88e+00	1.26e-02	7.50e-03	3.47e-03
chr5	35652023	35679782	ENSMUSG00000029096	0.5294	-	Htra3	protein_coding	6.69e-05	1.22e-02	3.868994	2.45e+00	4.51e-04	6.09e+00	7.81e-03	3.17e+00	2.58e+00	1.58e+00	7.21e-04	4.51e-04	1.80e-04	5.25e+00	5.55e+00	7.48e+00	3.33e-03	4.15e-03	1.60e-02
chr10	81346048	81350480	ENSMUSG00000020232	0.5921	-	Hmg20b	protein_coding	7.02e-05	1.27e-02	2.484596	5.05e+00	9.02e-03	7.80e+00	5.15e-02	6.07e+00	5.49e+00	3.58e+00	1.48e-02	9.84e-03	2.46e-03	7.56e+00	7.49e+00	8.34e+00	4.21e-02	4.00e-02	7.25e-02
chr6	82725025	82774454	ENSMUSG00000000628	0.4908	-	Hk2	protein_coding	7.11e-05	1.27e-02	-1.131074	8.83e+00	1.12e-01	7.62e+00	5.10e-02	9.96e+00	8.16e+00	8.37e+00	2.07e-01	5.97e-02	6.86e-02	6.19e+00	7.97e+00	8.69e+00	1.50e-02	5.22e-02	8.58e-02
chr8	21055047	21056016	ENSMUSG00000074446	0.4340	+	Defa23	protein_coding	7.18e-05	1.27e-02	1.506523	1.05e+01	1.10e+00	1.20e+01	3.13e+00	1.02e+01	1.05e+01	1.08e+01	8.76e-01	1.11e+00	1.33e+00	1.24e+01	1.18e+01	1.18e+01	4.05e+00	2.73e+00	2.63e+00
chr10	127884028	127888817	ENSMUSG00000040134	0.4662	-	Rdh7	protein_coding	7.34e-05	1.28e-02	1.693897	7.12e+00	4.83e-02	8.87e+00	1.57e-01	7.12e+00	6.49e+00	7.73e+00	4.55e-02	2.94e-02	6.99e-02	8.52e+00	9.21e+00	8.88e+00	1.20e-01	1.95e-01	1.55e-01
chr8	21134642	21135598	ENSMUSG00000074444	0.4316	+	Defa30	protein_coding	7.41e-05	1.28e-02	1.644513	1.17e+01	2.50e+00	1.33e+01	7.80e+00	1.14e+01	1.18e+01	1.19e+01	2.07e+00	2.58e+00	2.84e+00	1.38e+01	1.31e+01	1.31e+01	1.02e+01	6.69e+00	6.50e+00
chr16	97564684	97611195	ENSMUSG00000000385	0.4645	-	Tmprss2	protein_coding	7.99e-05	1.36e-02	1.538450	8.04e+00	9.66e-02	9.53e+00	2.81e-01	8.02e+00	8.09e+00	8.00e+00	9.56e-02	1.00e-01	9.41e-02	1.00e+01	9.32e+00	9.24e+00	3.85e-01	2.36e-01	2.23e-01
chr5	8660077	8748575	ENSMUSG00000040584	0.3991	+	Abcb1a	protein_coding	8.60e-05	1.45e-02	-1.694202	9.96e+00	2.13e-01	8.29e+00	6.57e-02	1.04e+01	9.65e+00	9.87e+00	2.76e-01	1.68e-01	1.96e-01	8.41e+00	8.35e+00	8.13e+00	7.08e-02	6.80e-02	5.84e-02
chr9	108936633	108949623	ENSMUSG00000025651	0.4876	+	Uqcrc1	protein_coding	9.12e-05	1.53e-02	1.601206	1.03e+01	2.20e-01	1.19e+01	6.68e-01	1.02e+01	1.04e+01	1.02e+01	2.13e-01	2.42e-01	2.05e-01	1.20e+01	1.18e+01	1.17e+01	7.36e-01	6.54e-01	6.14e-01
chr15	75108158	75111970	ENSMUSG00000022584	0.4881	-	Ly6c2	protein_coding	9.28e-05	1.54e-02	2.612443	3.94e+00	9.97e-03	6.69e+00	6.41e-02	3.58e+00	4.91e+00	3.32e+00	6.71e-03	1.77e-02	5.49e-03	7.13e+00	6.30e+00	6.63e+00	8.48e-02	4.76e-02	5.98e-02
chr8	78505271	78508898	ENSMUSG00000037070	0.4735	-	Rbmxl1	protein_coding	9.45e-05	1.55e-02	-1.802825	8.44e+00	2.42e-01	6.67e+00	6.89e-02	9.14e+00	7.94e+00	8.24e+00	3.69e-01	1.60e-01	1.98e-01	6.29e+00	7.26e+00	6.46e+00	5.04e-02	9.94e-02	5.69e-02
chr6	125460266	125494791	ENSMUSG00000030342	0.5016	-	Cd9	protein_coding	9.53e-05	1.55e-02	-1.961181	9.11e+00	2.02e-01	7.19e+00	5.16e-02	8.93e+00	8.60e+00	9.79e+00	1.68e-01	1.33e-01	3.04e-01	7.43e+00	7.46e+00	6.69e+00	5.92e-02	6.03e-02	3.51e-02
chr18	74939322	74961263	ENSMUSG00000053846	0.4758	-	Lipg	protein_coding	9.77e-05	1.57e-02	-3.807355	5.22e+00	1.12e-02	1.11e+00	5.13e-04	5.13e+00	5.29e+00	5.25e+00	1.05e-02	1.17e-02	1.14e-02	2.32e+00	1.00e+00	0.00e+00	1.23e-03	3.08e-04	0.00e+00
chr13	74009407	74035753	ENSMUSG00000021573	0.4930	+	Tppp	protein_coding	1.09e-04	1.74e-02	1.911323	5.42e+00	6.14e-03	7.06e+00	2.35e-02	5.46e+00	5.09e+00	5.70e+00	6.24e-03	4.79e-03	7.40e-03	8.26e+00	6.09e+00	6.83e+00	4.44e-02	9.72e-03	1.64e-02
chr19	5877808	5885766	ENSMUSG00000024818	0.5223	+	Slc25a45	protein_coding	1.34e-04	2.12e-02	1.632182	7.49e+00	4.59e-02	9.13e+00	1.43e-01	7.52e+00	7.37e+00	7.58e+00	4.68e-02	4.20e-02	4.89e-02	9.12e+00	9.17e+00	9.09e+00	1.42e-01	1.47e-01	1.39e-01
chr13	29906575	29985668	ENSMUSG00000016477	0.4567	-	E2f3	protein_coding	1.57e-04	2.44e-02	-1.605652	8.24e+00	5.20e-02	6.42e+00	1.70e-02	8.36e+00	8.01e+00	8.35e+00	5.60e-02	4.40e-02	5.59e-02	5.21e+00	7.18e+00	6.88e+00	6.17e-03	2.47e-02	2.00e-02
chr8	21391811	21392791	ENSMUSG00000094362	0.4465	+	Defa33	protein_coding	1.58e-04	2.44e-02	1.680196	1.18e+01	2.72e+00	1.35e+01	8.71e+00	1.16e+01	1.17e+01	1.22e+01	2.29e+00	2.40e+00	3.46e+00	1.36e+01	1.33e+01	1.36e+01	9.21e+00	7.74e+00	9.18e+00
chr14	68563388	68582086	ENSMUSG00000022057	0.3796	-	Adamdec1	protein_coding	1.82e-04	2.79e-02	1.639473	8.51e+00	1.69e-01	1.02e+01	5.26e-01	8.93e+00	8.61e+00	7.99e+00	2.17e-01	1.75e-01	1.14e-01	1.05e+01	9.82e+00	1.02e+01	6.34e-01	4.04e-01	5.41e-01
chr15	82221744	82224339	ENSMUSG00000068105	0.5331	-	Tnfrsf13c	protein_coding	1.90e-04	2.86e-02	-1.864625	8.25e+00	1.18e-01	6.36e+00	3.21e-02	8.58e+00	8.11e+00	8.06e+00	1.46e-01	1.06e-01	1.02e-01	6.75e+00	6.46e+00	5.86e+00	4.10e-02	3.34e-02	2.19e-02
chrX	140539528	140600659	ENSMUSG00000031431	0.4357	-	Tsc22d3	protein_coding	1.90e-04	2.86e-02	1.457742	7.24e+00	4.01e-02	8.66e+00	1.11e-01	6.88e+00	7.15e+00	7.69e+00	3.04e-02	3.66e-02	5.33e-02	9.25e+00	8.13e+00	8.60e+00	1.58e-01	7.28e-02	1.01e-01
chr5	137528127	137533510	ENSMUSG00000029713	0.6009	-	Gnb2	protein_coding	1.94e-04	2.88e-02	2.015279	1.00e+01	4.66e-01	1.19e+01	1.89e+00	1.02e+01	1.02e+01	9.62e+00	5.29e-01	5.22e-01	3.47e-01	1.11e+01	1.18e+01	1.28e+01	9.40e-01	1.62e+00	3.09e+00
chr19	7275396	7341860	ENSMUSG00000024969	0.4752	-	Mark2	protein_coding	1.95e-04	2.88e-02	1.841408	6.72e+00	6.16e-03	8.54e+00	2.22e-02	6.86e+00	6.64e+00	6.66e+00	6.76e-03	5.82e-03	5.88e-03	8.32e+00	8.45e+00	8.87e+00	1.87e-02	2.05e-02	2.75e-02
chr16	11313812	11320074	ENSMUSG00000022496	0.4669	+	Tnfrsf17	protein_coding	2.01e-04	2.95e-02	2.279224	3.92e+00	1.09e-02	6.23e+00	5.60e-02	3.32e+00	3.91e+00	4.52e+00	6.57e-03	1.02e-02	1.61e-02	6.73e+00	6.04e+00	5.93e+00	7.66e-02	4.74e-02	4.38e-02
chr8	21191614	21192549	ENSMUSG00000074442	0.4295	+	Defa31	protein_coding	2.07e-04	3.01e-02	1.435345	1.11e+01	1.59e+00	1.25e+01	4.31e+00	1.08e+01	1.10e+01	1.13e+01	1.33e+00	1.55e+00	1.90e+00	1.28e+01	1.23e+01	1.23e+01	5.45e+00	3.85e+00	3.62e+00
chr7	28808541	28822266	ENSMUSG00000015165	0.5125	+	Hnrnpl	protein_coding	2.14e-04	3.06e-02	-1.692257	1.05e+01	1.08e-01	8.81e+00	3.33e-02	1.07e+01	1.01e+01	1.07e+01	1.21e-01	8.08e-02	1.22e-01	8.99e+00	8.94e+00	8.50e+00	3.73e-02	3.60e-02	2.67e-02
chr6	125223933	125231860	ENSMUSG00000038213	0.4941	-	Tapbpl	protein_coding	2.18e-04	3.06e-02	-1.539750	1.11e+01	1.07e+00	9.51e+00	3.69e-01	1.11e+01	1.09e+01	1.11e+01	1.11e+00	9.76e-01	1.14e+00	9.52e+00	9.32e+00	9.70e+00	3.68e-01	3.21e-01	4.19e-01
chr1	84992690	85270566	ENSMUSG00000052477	0.4395	-	C130026I21Rik	protein_coding	2.19e-04	3.06e-02	-1.550197	6.92e+00	1.60e-02	5.02e+00	5.37e-03	7.29e+00	6.71e+00	6.74e+00	2.04e-02	1.36e-02	1.39e-02	3.91e+00	4.75e+00	6.39e+00	1.83e-03	3.40e-03	1.09e-02
chr9	21288410	21291407	ENSMUSG00000096472	0.5197	-	Cdkn2d	protein_coding	2.21e-04	3.06e-02	-1.491936	9.47e+00	2.25e-01	7.97e+00	7.99e-02	9.83e+00	9.04e+00	9.53e+00	2.82e-01	1.64e-01	2.30e-01	7.45e+00	8.27e+00	8.18e+00	5.41e-02	9.55e-02	9.02e-02
chr8	21734494	21735471	ENSMUSG00000064213	0.4325	+	Defa24	protein_coding	2.21e-04	3.06e-02	1.709130	1.28e+01	5.42e+00	1.45e+01	1.77e+01	1.26e+01	1.28e+01	1.31e+01	4.49e+00	5.17e+00	6.60e+00	1.49e+01	1.44e+01	1.43e+01	2.20e+01	1.59e+01	1.53e+01
chr8	55973640	55974219	ENSMUSG00000110164	0.4793	-	Gm7351	processed_pseudogene	2.22e-04	3.06e-02	-3.777608	4.95e+00	2.47e-02	7.74e-01	1.06e-03	5.46e+00	4.70e+00	4.70e+00	3.43e-02	1.99e-02	1.99e-02	0.00e+00	2.32e+00	0.00e+00	0.00e+00	3.19e-03	0.00e+00
chr7	18871331	18890459	ENSMUSG00000030413	0.4904	+	Pglyrp1	protein_coding	2.24e-04	3.06e-02	-1.646419	8.51e+00	9.66e-02	6.89e+00	3.07e-02	8.28e+00	8.98e+00	8.28e+00	7.99e-02	1.30e-01	7.97e-02	6.61e+00	7.17e+00	6.88e+00	2.50e-02	3.69e-02	3.02e-02
chr17	34839228	34850210	ENSMUSG00000040356	0.5458	-	Skiv2l	protein_coding	2.29e-04	3.10e-02	-1.535332	8.38e+00	2.94e-02	6.67e+00	1.01e-02	8.38e+00	8.29e+00	8.46e+00	2.95e-02	2.77e-02	3.11e-02	5.58e+00	7.29e+00	7.13e+00	4.16e-03	1.38e-02	1.23e-02
chr7	79720218	79732903	ENSMUSG00000030546	0.5159	-	Plin1	protein_coding	2.36e-04	3.17e-02	4.906891	0.00e+00	0.00e+00	3.60e+00	3.22e-03	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	4.95e+00	5.86e+00	0.00e+00	3.33e-03	6.32e-03
chr2	132904389	132945906	ENSMUSG00000027356	0.4276	-	Fermt1	protein_coding	2.44e-04	3.25e-02	1.621053	8.11e+00	4.56e-02	9.72e+00	1.41e-01	8.01e+00	8.07e+00	8.24e+00	4.25e-02	4.42e-02	5.00e-02	9.53e+00	9.66e+00	9.97e+00	1.22e-01	1.34e-01	1.65e-01
chr19	32122727	32389714	ENSMUSG00000040451	0.4386	-	Sgms1	protein_coding	2.51e-04	3.30e-02	-1.299702	9.22e+00	4.78e-02	8.26e+00	1.94e-02	1.06e+01	8.06e+00	8.98e+00	9.65e-02	1.62e-02	3.07e-02	7.71e+00	8.59e+00	8.49e+00	1.28e-02	2.35e-02	2.19e-02
chr8	21162277	21163249	ENSMUSG00000074443	0.4378	+	Defa22	protein_coding	2.53e-04	3.30e-02	1.822045	1.26e+01	4.66e+00	1.44e+01	1.65e+01	1.24e+01	1.26e+01	1.28e+01	4.01e+00	4.66e+00	5.30e+00	1.46e+01	1.40e+01	1.46e+01	1.84e+01	1.20e+01	1.90e+01
chr7	125603429	125633570	ENSMUSG00000030745	0.4898	+	Il21r	protein_coding	2.53e-04	3.30e-02	-1.322576	9.10e+00	9.31e-02	8.21e+00	3.71e-02	1.06e+01	8.03e+00	8.68e+00	1.95e-01	3.27e-02	5.14e-02	8.13e+00	8.13e+00	8.36e+00	3.50e-02	3.52e-02	4.12e-02
chr7	101317086	101346626	ENSMUSG00000030688	0.5159	+	Stard10	protein_coding	2.74e-04	3.54e-02	1.467931	8.17e+00	4.32e-02	9.63e+00	1.20e-01	8.37e+00	8.33e+00	7.81e+00	4.90e-02	4.76e-02	3.31e-02	9.94e+00	9.73e+00	9.20e+00	1.46e-01	1.26e-01	8.72e-02
chr6	120463247	120487559	ENSMUSG00000002897	0.4953	+	Il17ra	protein_coding	2.76e-04	3.54e-02	-1.639582	9.91e+00	1.28e-01	8.25e+00	4.09e-02	1.00e+01	9.69e+00	1.00e+01	1.39e-01	1.09e-01	1.36e-01	8.65e+00	7.99e+00	8.11e+00	5.30e-02	3.34e-02	3.63e-02
chr17	74200706	74294883	ENSMUSG00000058704	0.3979	-	Memo1	protein_coding	2.78e-04	3.54e-02	-2.141201	7.51e+00	1.04e-01	5.06e+00	2.32e-02	7.60e+00	7.45e+00	7.48e+00	1.11e-01	9.99e-02	1.02e-01	4.52e+00	6.34e+00	4.32e+00	1.26e-02	4.59e-02	1.09e-02
chr8	21529032	21530012	ENSMUSG00000094818	0.4455	+	Defa32	protein_coding	2.81e-04	3.55e-02	1.725163	1.23e+01	3.83e+00	1.41e+01	1.27e+01	1.21e+01	1.22e+01	1.26e+01	3.36e+00	3.47e+00	4.67e+00	1.41e+01	1.39e+01	1.42e+01	1.28e+01	1.16e+01	1.37e+01
chr4	129461581	129488498	ENSMUSG00000040859	0.4788	+	Bsdc1	protein_coding	2.90e-04	3.62e-02	-1.218140	8.91e+00	5.45e-02	7.08e+00	2.34e-02	9.11e+00	8.50e+00	9.11e+00	6.16e-02	4.04e-02	6.15e-02	4.75e+00	8.14e+00	8.33e+00	2.90e-03	3.15e-02	3.57e-02
chr6	86663188	86665551	ENSMUSG00000108291	0.4552	-	Gm44292	TEC	2.91e-04	3.62e-02	2.576925	3.11e+00	7.18e-03	5.78e+00	4.68e-02	3.32e+00	2.00e+00	4.00e+00	7.18e-03	2.39e-03	1.20e-02	6.55e+00	5.64e+00	5.13e+00	7.42e-02	3.91e-02	2.71e-02
chr17	39846958	39848788	ENSMUSG00000098178	0.6019	+	Gm42418	lincRNA	2.95e-04	3.63e-02	1.672758	6.68e+00	8.96e-02	8.28e+00	2.87e-01	6.11e+00	6.39e+00	7.55e+00	5.42e-02	6.62e-02	1.48e-01	7.11e+00	9.07e+00	8.67e+00	1.09e-01	4.28e-01	3.25e-01
chr3	107938847	107943749	ENSMUSG00000068762	0.5107	-	Gstm6	protein_coding	3.02e-04	3.70e-02	2.818760	3.45e+00	2.02e-03	6.22e+00	1.54e-02	4.17e+00	2.58e+00	3.58e+00	3.13e-03	9.20e-04	2.02e-03	5.13e+00	6.95e+00	6.57e+00	6.26e-03	2.26e-02	1.73e-02

Download the DEG result list for Wt_vs_ColVICreLtbR.
Download the whole result list for Wt_vs_ColVICreLtbR.

DEG table for the contrast Wt_vs_ColVICreTnfR1

The following table presents the top 10% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast Wt_vs_ColVICreTnfR1. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right.

chromosome	start	end	gene_id	gc_content	strand	gene_name	biotype	p-value_deseq	FDR_deseq	log2_normalized_fold_change_Wt_vs_ColVICreTnfR1	log2_normalized_mean_counts_Wt	rpgm_normalized_mean_counts_Wt	log2_normalized_mean_counts_ColVICreTnfR1	rpgm_normalized_mean_counts_ColVICreTnfR1	log2_normalized_counts_GK3R152-Wt-W1	log2_normalized_counts_GK3R153-Wt-W2	log2_normalized_counts_GK3R154-Wt-W3	rpgm_normalized_counts_GK3R152-Wt-W1	rpgm_normalized_counts_GK3R153-Wt-W2	rpgm_normalized_counts_GK3R154-Wt-W3	log2_normalized_counts_GK3R158-ColVICreTnfR1-T7	log2_normalized_counts_GK3R159-ColVICreTnfR1-T8	log2_normalized_counts_GK3R160-ColVICreTnfR1-T9	rpgm_normalized_counts_GK3R158-ColVICreTnfR1-T7	rpgm_normalized_counts_GK3R159-ColVICreTnfR1-T8	rpgm_normalized_counts_GK3R160-ColVICreTnfR1-T9
chr11	31357307	31370074	ENSMUSG00000020303	0.4995	-	Stc2	protein_coding	1.28e-35	2.10e-31	-7.38e+00	6.39e+00	1.43e-01	2.39e+00	7.07e-04	3.81e+00	3.91e+00	1.15e+01	1.97e-03	2.12e-03	4.25e-01	3.00e+00	1.58e+00	2.58e+00	1.06e-03	3.03e-04	7.57e-04
chr9	3000282	3038313	ENSMUSG00000097312	0.3488	-	Gm26870	lincRNA	4.54e-26	3.72e-22	-5.88e+00	7.43e+00	2.82e-01	2.78e+00	4.52e-03	1.58e+00	9.40e+00	1.13e+01	5.32e-04	1.79e-01	6.67e-01	5.52e+00	2.81e+00	0.00e+00	1.20e-02	1.59e-03	0.00e+00
chrX	103460375	103483217	ENSMUSG00000086503	0.4122	-	Xist	lincRNA	9.06e-24	4.95e-20	-6.74e+00	6.68e+00	4.00e-02	0.00e+00	0.00e+00	7.17e+00	6.73e+00	6.13e+00	5.42e-02	3.98e-02	2.61e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chrY	1010543	1028847	ENSMUSG00000069049	0.3494	+	Eif2s3y	protein_coding	3.79e-16	1.56e-12	7.25e+00	0.00e+00	0.00e+00	7.23e+00	2.69e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	6.95e+00	7.31e+00	7.43e+00	2.19e-02	2.82e-02	3.06e-02
chrY	1260771	1286629	ENSMUSG00000069045	0.3678	-	Ddx3y	protein_coding	2.39e-13	7.83e-10	6.84e+00	0.00e+00	0.00e+00	6.78e+00	6.06e-03	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	6.29e+00	6.73e+00	7.32e+00	4.11e-03	5.60e-03	8.48e-03
chr6	58584523	58695676	ENSMUSG00000029802	0.3979	+	Abcg2	protein_coding	1.62e-11	4.42e-08	2.89e+00	8.97e+00	3.82e-02	1.05e+01	2.84e-01	8.75e+00	9.47e+00	8.68e+00	3.18e-02	5.25e-02	3.03e-02	1.33e+01	9.58e+00	8.53e+00	7.67e-01	5.67e-02	2.73e-02
chrY	897788	956786	ENSMUSG00000056673	0.3872	+	Kdm5d	protein_coding	5.60e-08	1.31e-04	5.79e+00	0.00e+00	0.00e+00	5.68e+00	1.54e-03	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	6.36e+00	5.73e+00	4.95e+00	2.30e-03	1.48e-03	8.52e-04
chrY	1096861	1245759	ENSMUSG00000068457	0.3693	-	Uty	protein_coding	2.15e-07	4.42e-04	5.65e+00	0.00e+00	0.00e+00	5.64e+00	1.26e-03	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	5.46e+00	5.49e+00	5.95e+00	1.10e-03	1.12e-03	1.55e-03
chr2	143150830	143151630	ENSMUSG00000083047	0.4906	-	Gm14082	processed_pseudogene	1.05e-06	1.92e-03	-3.35e+00	3.46e+00	1.54e-02	8.62e-01	7.97e-04	3.17e+00	1.58e+00	5.61e+00	6.38e-03	1.59e-03	3.83e-02	1.00e+00	0.00e+00	1.58e+00	7.97e-04	0.00e+00	1.59e-03
chr11	100228845	100232078	ENSMUSG00000084257	0.4858	-	Gm11597	unprocessed_pseudogene	5.96e-06	9.78e-03	-3.66e+00	1.72e+00	9.30e-03	0.00e+00	0.00e+00	0.00e+00	0.00e+00	5.17e+00	0.00e+00	0.00e+00	2.79e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr12	113325240	113330523	ENSMUSG00000076614	0.5068	-	Ighg1	IG_C_gene	7.56e-06	1.13e-02	2.36e+00	6.17e+00	1.83e-02	8.34e+00	9.55e-02	6.34e+00	6.30e+00	5.86e+00	2.05e-02	1.99e-02	1.46e-02	8.97e+00	7.15e+00	8.90e+00	1.28e-01	3.61e-02	1.22e-01
chr17	8236043	8257127	ENSMUSG00000040899	0.4766	+	Ccr6	protein_coding	9.44e-06	1.29e-02	-2.02e+00	8.18e+00	2.23e-01	5.99e+00	5.46e-02	8.26e+00	7.89e+00	8.40e+00	2.33e-01	1.80e-01	2.57e-01	5.64e+00	5.32e+00	7.00e+00	3.73e-02	2.97e-02	9.67e-02
chr6	135137522	135198022	ENSMUSG00000042770	0.4675	-	Hebp1	protein_coding	1.09e-05	1.38e-02	2.42e+00	5.07e+00	6.07e-03	7.32e+00	3.34e-02	5.13e+00	5.21e+00	4.86e+00	6.32e-03	6.69e-03	5.20e-03	8.09e+00	6.30e+00	7.57e+00	5.05e-02	1.45e-02	3.51e-02
chr3	97125511	97126113	ENSMUSG00000106324	0.4196	-	Gm43222	processed_pseudogene	1.77e-05	2.08e-02	-3.91e+00	2.94e+00	1.12e-02	0.00e+00	0.00e+00	1.58e+00	2.00e+00	5.25e+00	1.59e-03	2.39e-03	2.95e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chrX	162961992	162964599	ENSMUSG00000040808	0.4555	-	S100g	protein_coding	1.94e-05	2.12e-02	-1.84e+00	6.65e+00	7.18e-02	4.78e+00	1.96e-02	6.75e+00	6.85e+00	6.34e+00	7.65e-02	8.15e-02	5.72e-02	4.64e+00	5.25e+00	4.46e+00	1.72e-02	2.65e-02	1.50e-02
chr13	8940336	8940977	ENSMUSG00000061988	0.5171	-	Rpl10a-ps2	processed_pseudogene	3.35e-05	3.43e-02	-2.79e+00	3.38e+00	2.13e-02	1.39e+00	2.39e-03	2.32e+00	1.58e+00	6.23e+00	3.19e-03	1.59e-03	5.90e-02	0.00e+00	1.00e+00	3.17e+00	0.00e+00	7.97e-04	6.38e-03
chr17	72918305	72941942	ENSMUSG00000024063	0.4696	+	Lbh	protein_coding	3.83e-05	3.69e-02	1.74e+00	9.06e+00	1.12e-01	1.07e+01	3.75e-01	9.71e+00	8.64e+00	8.83e+00	1.67e-01	7.91e-02	9.05e-02	1.17e+01	1.05e+01	9.83e+00	6.65e-01	2.79e-01	1.81e-01
chr11	5969644	6066362	ENSMUSG00000057897	0.5229	-	Camk2b	protein_coding	4.58e-05	4.18e-02	2.00e+00	4.72e+00	2.85e-03	6.74e+00	1.17e-02	4.46e+00	4.17e+00	5.52e+00	2.16e-03	1.75e-03	4.64e-03	5.98e+00	7.06e+00	7.20e+00	6.39e-03	1.36e-02	1.50e-02
chr8	3630955	3643644	ENSMUSG00000004626	0.5132	+	Stxbp2	protein_coding	5.24e-05	4.53e-02	1.64e+00	9.00e+00	3.84e-02	1.03e+01	1.19e-01	8.94e+00	8.94e+00	9.14e+00	3.65e-02	3.65e-02	4.21e-02	1.17e+01	9.29e+00	9.88e+00	2.41e-01	4.66e-02	7.03e-02
chr18	84011627	84086404	ENSMUSG00000046982	0.4628	-	Tshz1	protein_coding	1.20e-04	9.74e-02	-2.04e+00	6.83e+00	4.30e-02	4.70e+00	1.02e-02	6.82e+00	7.07e+00	6.61e+00	4.22e-02	5.01e-02	3.65e-02	4.00e+00	4.70e+00	5.39e+00	5.65e-03	9.42e-03	1.54e-02
chr6	128778485	128789215	ENSMUSG00000030325	0.4407	-	Klrb1c	protein_coding	1.25e-04	9.74e-02	-4.19e+00	4.58e+00	5.42e-03	3.33e-01	7.74e-05	4.75e+00	4.81e+00	4.17e+00	6.04e-03	6.27e-03	3.95e-03	1.00e+00	0.00e+00	0.00e+00	2.32e-04	0.00e+00	0.00e+00
chr7	103826534	103828096	ENSMUSG00000052305	0.4651	-	Hbb-bs	protein_coding	1.65e-04	1.23e-01	-1.50e+00	7.49e+00	6.98e-02	5.98e+00	2.44e-02	7.93e+00	7.73e+00	6.82e+00	8.99e-02	7.81e-02	4.15e-02	5.95e+00	5.36e+00	6.61e+00	2.26e-02	1.48e-02	3.59e-02
chr6	37686239	37687195	ENSMUSG00000107035	0.5517	-	Ybx1-ps2	processed_pseudogene	3.30e-04	2.35e-01	-1.50e+00	8.71e+00	3.36e-01	7.19e+00	1.18e-01	8.79e+00	8.48e+00	8.86e+00	3.52e-01	2.85e-01	3.71e-01	6.86e+00	7.13e+00	7.58e+00	9.17e-02	1.11e-01	1.52e-01
chr7	24777206	24784657	ENSMUSG00000054169	0.4499	+	Ceacam10	protein_coding	3.44e-04	2.35e-01	1.65e+00	6.21e+00	2.78e-02	7.84e+00	8.78e-02	5.88e+00	6.82e+00	5.93e+00	2.10e-02	4.06e-02	2.18e-02	7.81e+00	8.46e+00	7.26e+00	8.13e-02	1.27e-01	5.52e-02
chr7	17138871	17139472	ENSMUSG00000108694	0.5150	-	Gm7287	processed_pseudogene	4.33e-04	2.84e-01	-2.98e+00	3.86e+00	1.59e-02	8.62e-01	1.33e-03	2.32e+00	3.81e+00	5.46e+00	3.19e-03	1.04e-02	3.43e-02	0.00e+00	2.58e+00	0.00e+00	0.00e+00	3.99e-03	0.00e+00
chr6	128992952	129008040	ENSMUSG00000087150	0.4245	+	BC064078	transcribed_unprocessed_pseudogene	8.38e-04	5.29e-01	2.78e+00	1.89e+00	4.50e-03	5.54e+00	3.53e-02	4.09e+00	0.00e+00	1.58e+00	1.20e-02	0.00e+00	1.50e-03	5.00e+00	5.86e+00	5.75e+00	2.33e-02	4.28e-02	3.98e-02
chr7	4792874	4795066	ENSMUSG00000030432	0.5408	+	Rpl28	protein_coding	9.34e-04	5.67e-01	-1.38e+00	1.12e+01	7.54e-01	9.77e+00	2.90e-01	1.13e+01	1.09e+01	1.13e+01	7.98e-01	6.41e-01	8.24e-01	1.00e+01	9.93e+00	9.38e+00	3.35e-01	3.18e-01	2.17e-01
chr9	78257129	78269166	ENSMUSG00000111709	0.4593	+	Gm3776	protein_coding	1.01e-03	5.93e-01	1.59e+00	5.60e+00	3.53e-02	7.18e+00	1.08e-01	5.64e+00	5.36e+00	5.81e+00	3.61e-02	2.94e-02	4.05e-02	7.45e+00	7.31e+00	6.77e+00	1.28e-01	1.16e-01	7.95e-02
chr5	90490737	90508907	ENSMUSG00000054932	0.4053	+	Afp	protein_coding	1.45e-03	8.09e-01	2.38e+00	9.36e-01	3.99e-04	3.93e+00	2.93e-03	0.00e+00	0.00e+00	2.81e+00	0.00e+00	0.00e+00	1.20e-03	4.32e+00	4.00e+00	3.46e+00	3.79e-03	2.99e-03	2.00e-03

Download the DEG result list for Wt_vs_ColVICreTnfR1.
Download the whole result list for Wt_vs_ColVICreTnfR1.

DEG table for the contrast Wt_vs_TnfR1

The following table presents the top 10% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast Wt_vs_TnfR1. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right.

chromosome	start	end	gene_id	gc_content	strand	gene_name	biotype	p-value_deseq	FDR_deseq	log2_normalized_fold_change_Wt_vs_TnfR1	log2_normalized_mean_counts_Wt	rpgm_normalized_mean_counts_Wt	log2_normalized_mean_counts_TnfR1	rpgm_normalized_mean_counts_TnfR1	log2_normalized_counts_GK3R152-Wt-W1	log2_normalized_counts_GK3R153-Wt-W2	log2_normalized_counts_GK3R154-Wt-W3	rpgm_normalized_counts_GK3R152-Wt-W1	rpgm_normalized_counts_GK3R153-Wt-W2	rpgm_normalized_counts_GK3R154-Wt-W3	log2_normalized_counts_GK3R155-TnfR1-D4	log2_normalized_counts_GK3R156-TnfR1-D5	log2_normalized_counts_GK3R157-TnfR1-D6	rpgm_normalized_counts_GK3R155-TnfR1-D4	rpgm_normalized_counts_GK3R156-TnfR1-D5	rpgm_normalized_counts_GK3R157-TnfR1-D6
chr3	95410346	95411207	ENSMUSG00000096177	0.5580	-	Gm5070	processed_pseudogene	1.51e-37	2.47e-33	7.033924	2.50e+00	5.05e-03	6.23e+00	7.66e-01	1.58e+00	2.00e+00	3.91e+00	1.59e-03	2.39e-03	1.12e-02	2.00e+00	5.21e+00	1.15e+01	2.39e-03	2.87e-02	2.27e+00
chr9	3000282	3038313	ENSMUSG00000097312	0.3488	-	Gm26870	lincRNA	1.39e-33	1.14e-29	-6.939353	7.43e+00	2.82e-01	2.52e+00	2.04e-03	1.58e+00	9.40e+00	1.13e+01	5.32e-04	1.79e-01	6.67e-01	1.00e+00	2.32e+00	4.25e+00	2.66e-04	1.06e-03	4.78e-03
chr9	55148854	55207529	ENSMUSG00000032307	0.4028	+	Ube2q2	protein_coding	5.06e-26	2.77e-22	5.305066	4.55e+00	8.12e-03	6.49e+00	3.35e-01	4.64e+00	4.25e+00	4.75e+00	8.60e-03	6.45e-03	9.31e-03	4.46e+00	3.58e+00	1.14e+01	7.52e-03	3.94e-03	9.93e-01
chr5	95956951	95961068	ENSMUSG00000023078	0.3941	+	Cxcl13	protein_coding	5.80e-23	2.38e-19	-4.783672	9.27e+00	3.03e-01	4.46e+00	1.05e-02	9.02e+00	9.53e+00	9.26e+00	2.52e-01	3.59e-01	2.99e-01	4.91e+00	4.00e+00	4.46e+00	1.41e-02	7.30e-03	1.02e-02
chr9	108358202	108359069	ENSMUSG00000104280	0.5703	-	Rps2-ps11	processed_pseudogene	1.65e-22	5.40e-19	5.541373	2.66e+00	6.65e-03	5.55e+00	3.46e-01	2.00e+00	1.58e+00	4.39e+00	2.39e-03	1.59e-03	1.59e-02	1.58e+00	4.75e+00	1.03e+01	1.59e-03	2.07e-02	1.02e+00
chr2	143150830	143151630	ENSMUSG00000083047	0.4906	-	Gm14082	processed_pseudogene	2.59e-22	7.07e-19	4.841577	3.46e+00	1.54e-02	6.23e+00	4.64e-01	3.17e+00	1.58e+00	5.61e+00	6.38e-03	1.59e-03	3.83e-02	3.00e+00	4.95e+00	1.07e+01	5.58e-03	2.39e-02	1.36e+00
chr13	67810246	67811200	ENSMUSG00000097906	0.5560	+	Gm9625	processed_pseudogene	1.87e-21	4.37e-18	4.056023	7.72e+00	1.70e-01	9.63e+00	2.85e+00	7.44e+00	7.61e+00	8.10e+00	1.38e-01	1.55e-01	2.19e-01	7.97e+00	7.58e+00	1.33e+01	1.99e-01	1.52e-01	8.19e+00
chr6	79048116	79048824	ENSMUSG00000107772	0.4993	+	Gm5311	processed_pseudogene	1.39e-20	2.85e-17	5.607683	2.19e+00	4.78e-03	4.27e+00	2.71e-01	1.00e+00	1.58e+00	4.00e+00	7.97e-04	1.59e-03	1.20e-02	0.00e+00	2.81e+00	9.99e+00	0.00e+00	4.78e-03	8.09e-01
chr3	152153447	152154116	ENSMUSG00000084343	0.5194	+	Gm16198	processed_pseudogene	1.41e-18	2.57e-15	5.892017	1.58e+00	2.66e-03	5.05e+00	2.04e-01	1.58e+00	0.00e+00	3.17e+00	1.59e-03	0.00e+00	6.38e-03	2.00e+00	3.58e+00	9.56e+00	2.39e-03	8.77e-03	6.02e-01
chr15	79823896	79834688	ENSMUSG00000089715	0.5498	-	Cbx6	protein_coding	2.11e-17	3.46e-14	3.618815	7.46e+00	2.03e-02	9.07e+00	2.51e-01	7.60e+00	7.40e+00	7.38e+00	2.23e-02	1.94e-02	1.92e-02	7.29e+00	7.31e+00	1.26e+01	1.79e-02	1.83e-02	7.17e-01
chr13	8940336	8940977	ENSMUSG00000061988	0.5171	-	Rpl10a-ps2	processed_pseudogene	3.91e-17	5.83e-14	4.025840	3.38e+00	2.13e-02	5.79e+00	3.59e-01	2.32e+00	1.58e+00	6.23e+00	3.19e-03	1.59e-03	5.90e-02	3.00e+00	4.00e+00	1.04e+01	5.58e-03	1.20e-02	1.06e+00
chr6	72355447	72359762	ENSMUSG00000055912	0.5582	+	Tmem150a	protein_coding	1.28e-16	1.75e-13	5.019591	2.41e+00	2.75e-03	5.74e+00	9.81e-02	2.58e+00	4.64e+00	0.00e+00	1.42e-03	6.82e-03	0.00e+00	3.00e+00	4.25e+00	9.98e+00	1.99e-03	5.12e-03	2.87e-01
chr5	73476447	73477353	ENSMUSG00000082039	0.5413	-	Gm15653	processed_pseudogene	5.43e-16	6.85e-13	5.778973	1.46e+00	2.13e-03	4.84e+00	1.60e-01	1.58e+00	0.00e+00	2.81e+00	1.59e-03	0.00e+00	4.78e-03	2.00e+00	3.32e+00	9.20e+00	2.39e-03	7.18e-03	4.70e-01
chr13	41182495	41220405	ENSMUSG00000021364	0.4502	-	Elovl2	protein_coding	6.84e-16	8.02e-13	5.604862	1.11e+00	7.40e-04	4.45e+00	4.78e-02	0.00e+00	0.00e+00	3.32e+00	0.00e+00	0.00e+00	2.22e-03	2.58e+00	1.58e+00	9.17e+00	1.23e-03	4.93e-04	1.42e-01
chr11	100228845	100232078	ENSMUSG00000084257	0.4858	-	Gm11597	unprocessed_pseudogene	8.73e-16	9.01e-13	4.469749	1.72e+00	9.30e-03	4.10e+00	2.23e-01	0.00e+00	0.00e+00	5.17e+00	0.00e+00	0.00e+00	2.79e-02	0.00e+00	2.58e+00	9.71e+00	0.00e+00	3.99e-03	6.65e-01
chr2	144142488	144143373	ENSMUSG00000082480	0.5756	-	Gm11687	processed_pseudogene	8.78e-16	9.01e-13	5.035624	2.99e+00	5.85e-03	5.26e+00	2.17e-01	2.58e+00	2.81e+00	3.58e+00	3.99e-03	4.78e-03	8.77e-03	3.32e+00	2.81e+00	9.65e+00	7.18e-03	4.78e-03	6.40e-01
chr1	55127297	55128287	ENSMUSG00000089670	0.5590	+	Gm16581	processed_pseudogene	3.26e-13	3.15e-10	4.164907	3.94e+00	1.20e-02	5.10e+00	2.28e-01	3.58e+00	3.70e+00	4.52e+00	8.77e-03	9.57e-03	1.75e-02	3.00e+00	2.58e+00	9.73e+00	5.58e-03	3.99e-03	6.75e-01
chr18	7868832	7973547	ENSMUSG00000024283	0.3823	+	Wac	protein_coding	2.23e-12	2.03e-09	2.914646	7.29e+00	1.28e-02	8.85e+00	9.72e-02	7.34e+00	7.15e+00	7.38e+00	1.33e-02	1.16e-02	1.36e-02	7.39e+00	7.51e+00	1.16e+01	1.38e-02	1.49e-02	2.63e-01
chr1	36548639	36558349	ENSMUSG00000026121	0.5748	-	Sema4c	protein_coding	1.71e-11	1.47e-08	3.725102	3.86e+00	2.56e-03	6.26e+00	3.55e-02	3.70e+00	2.58e+00	5.29e+00	1.67e-03	6.97e-04	5.30e-03	4.70e+00	4.58e+00	9.49e+00	3.49e-03	3.21e-03	9.99e-02
chr3	57841895	57848079	ENSMUSG00000027805	0.4666	-	Pfn2	protein_coding	6.91e-11	5.66e-08	3.191518	5.50e+00	1.05e-02	7.16e+00	9.81e-02	5.09e+00	5.98e+00	5.43e+00	7.61e-03	1.43e-02	9.69e-03	4.39e+00	6.95e+00	1.01e+01	4.61e-03	2.84e-02	2.61e-01
chr7	5127396	5129356	ENSMUSG00000109495	0.5079	-	RP23-419K14.11	processed_pseudogene	8.37e-11	6.54e-08	2.773873	6.44e+00	7.20e-02	7.77e+00	4.97e-01	5.83e+00	6.51e+00	6.98e+00	4.47e-02	7.18e-02	9.97e-02	6.00e+00	6.57e+00	1.07e+01	5.02e-02	7.50e-02	1.37e+00
chrX	90744546	90745062	ENSMUSG00000084289	0.4565	-	Gm6977	processed_pseudogene	1.02e-10	7.33e-08	2.512805	9.02e+00	4.22e-01	9.90e+00	2.41e+00	8.99e+00	8.70e+00	9.38e+00	4.06e-01	3.31e-01	5.30e-01	7.89e+00	8.75e+00	1.30e+01	1.89e-01	3.43e-01	6.71e+00
chr15	59210908	59211720	ENSMUSG00000025922	0.4625	+	Gm5045	processed_pseudogene	1.03e-10	7.33e-08	3.793549	3.59e+00	1.12e-02	5.17e+00	1.65e-01	3.32e+00	2.58e+00	4.86e+00	7.18e-03	3.99e-03	2.23e-02	2.81e+00	3.46e+00	9.24e+00	4.78e-03	7.97e-03	4.82e-01
chr6	146782469	146783274	ENSMUSG00000107788	0.5633	+	Gm6266	processed_pseudogene	1.96e-10	1.34e-07	4.420152	2.72e+00	5.05e-03	4.81e+00	1.24e-01	2.58e+00	2.00e+00	3.58e+00	3.99e-03	2.39e-03	8.77e-03	2.58e+00	3.00e+00	8.84e+00	3.99e-03	5.58e-03	3.64e-01
chr8	107388225	107403206	ENSMUSG00000003849	0.4688	-	Nqo1	protein_coding	5.89e-10	3.87e-07	2.832753	5.92e+00	3.28e-02	7.68e+00	2.37e-01	5.75e+00	5.70e+00	6.30e+00	2.87e-02	2.76e-02	4.22e-02	6.64e+00	6.25e+00	1.02e+01	5.36e-02	4.06e-02	6.17e-01
chr8	65131033	65132314	ENSMUSG00000109935	0.4836	-	Gm7619	processed_pseudogene	1.04e-09	6.58e-07	4.647698	2.25e+00	3.19e-03	3.95e+00	9.91e-02	2.58e+00	1.58e+00	2.58e+00	3.99e-03	1.59e-03	3.99e-03	1.00e+00	2.32e+00	8.53e+00	7.97e-04	3.19e-03	2.93e-01
chr12	113325240	113330523	ENSMUSG00000076614	0.5068	-	Ighg1	IG_C_gene	1.84e-09	1.12e-06	-3.244622	6.17e+00	1.83e-02	2.82e+00	1.70e-03	6.34e+00	6.30e+00	5.86e+00	2.05e-02	1.99e-02	1.46e-02	3.00e+00	2.00e+00	3.46e+00	1.79e-03	7.67e-04	2.56e-03
chr5	148182899	148184377	ENSMUSG00000066554	0.5423	-	Gm10167	processed_pseudogene	2.30e-09	1.35e-06	2.908022	5.81e+00	4.44e-02	6.99e+00	3.38e-01	6.07e+00	5.73e+00	5.64e+00	5.26e-02	4.15e-02	3.91e-02	4.58e+00	6.17e+00	1.02e+01	1.83e-02	5.66e-02	9.40e-01
chr2	9857078	9890034	ENSMUSG00000015619	0.4826	-	Gata3	protein_coding	2.86e-09	1.62e-06	3.085730	4.94e+00	4.81e-03	6.13e+00	4.20e-02	4.46e+00	4.75e+00	5.61e+00	3.19e-03	3.95e-03	7.30e-03	4.25e+00	4.52e+00	9.63e+00	2.74e-03	3.34e-03	1.20e-01
chr11	43670801	43671484	ENSMUSG00000083662	0.5044	+	Gm12152	processed_pseudogene	3.74e-09	2.04e-06	4.871485	1.53e+00	2.13e-03	4.36e+00	8.48e-02	2.58e+00	0.00e+00	2.00e+00	3.99e-03	0.00e+00	2.39e-03	2.00e+00	2.81e+00	8.28e+00	2.39e-03	4.78e-03	2.47e-01
chr2	110418170	110419619	ENSMUSG00000083320	0.4497	-	Gm13935	processed_pseudogene	4.77e-09	2.53e-06	3.723026	3.63e+00	9.57e-03	5.89e+00	1.36e-01	3.17e+00	3.46e+00	4.25e+00	6.38e-03	7.97e-03	1.44e-02	4.25e+00	4.52e+00	8.89e+00	1.44e-02	1.75e-02	3.76e-01
chr1	57774162	57948394	ENSMUSG00000038305	0.4336	+	Spats2l	protein_coding	9.50e-09	4.87e-06	2.661720	5.93e+00	4.13e-03	7.87e+00	2.65e-02	5.75e+00	5.98e+00	6.04e+00	3.65e-03	4.26e-03	4.47e-03	7.09e+00	6.67e+00	9.85e+00	9.29e-03	6.95e-03	6.32e-02
chr5	66890366	66890876	ENSMUSG00000082420	0.5245	+	Gm6517	processed_pseudogene	1.10e-08	5.45e-06	3.591276	3.29e+00	9.30e-03	4.90e+00	1.21e-01	2.58e+00	2.58e+00	4.70e+00	3.99e-03	3.99e-03	1.99e-02	3.32e+00	2.58e+00	8.79e+00	7.18e-03	3.99e-03	3.52e-01
chr17	23675447	23677449	ENSMUSG00000023905	0.5746	-	Tnfrsf12a	protein_coding	1.19e-08	5.77e-06	3.162620	4.32e+00	1.17e-02	5.82e+00	1.09e-01	3.58e+00	4.25e+00	5.13e+00	6.12e-03	1.00e-02	1.89e-02	4.09e+00	4.25e+00	9.12e+00	8.90e-03	1.00e-02	3.08e-01
chrX	57736547	57738555	ENSMUSG00000080710	0.4032	-	Gm8107	processed_pseudogene	1.24e-08	5.82e-06	3.860142	2.06e+00	5.32e-03	3.98e+00	8.80e-02	0.00e+00	2.00e+00	4.17e+00	0.00e+00	2.39e-03	1.36e-02	2.00e+00	1.58e+00	8.35e+00	2.39e-03	1.59e-03	2.60e-01
chr3	34183307	34184192	ENSMUSG00000105739	0.4458	+	Gm5708	processed_pseudogene	1.88e-08	8.55e-06	4.800900	8.62e-01	1.33e-03	3.91e+00	5.85e-02	0.00e+00	0.00e+00	2.58e+00	0.00e+00	0.00e+00	3.99e-03	1.00e+00	3.00e+00	7.73e+00	7.97e-04	5.58e-03	1.69e-01
chr9	50494525	50505482	ENSMUSG00000032068	0.4575	+	Plet1	protein_coding	1.98e-08	8.77e-06	2.605376	6.37e+00	2.49e-02	8.97e+00	1.53e-01	6.93e+00	6.66e+00	5.52e+00	3.40e-02	2.81e-02	1.26e-02	9.25e+00	8.08e+00	9.56e+00	1.71e-01	7.58e-02	2.12e-01
chr7	17138871	17139472	ENSMUSG00000108694	0.5150	-	Gm7287	processed_pseudogene	2.74e-08	1.18e-05	3.078003	3.86e+00	1.59e-02	4.89e+00	1.41e-01	2.32e+00	3.81e+00	5.46e+00	3.19e-03	1.04e-02	3.43e-02	2.32e+00	3.32e+00	9.01e+00	3.19e-03	7.18e-03	4.11e-01
chr6	127411130	127411733	ENSMUSG00000106883	0.4702	+	Gm43632	processed_pseudogene	3.70e-08	1.55e-05	4.110846	2.41e+00	3.99e-03	4.46e+00	8.19e-02	2.32e+00	1.58e+00	3.32e+00	3.19e-03	1.59e-03	7.18e-03	3.17e+00	2.00e+00	8.22e+00	6.38e-03	2.39e-03	2.37e-01
chr5	12669155	12670728	ENSMUSG00000105237	0.5210	-	Gm42580	processed_pseudogene	4.53e-08	1.86e-05	5.507795	3.33e-01	2.66e-04	3.26e+00	4.76e-02	1.00e+00	0.00e+00	0.00e+00	7.97e-04	0.00e+00	0.00e+00	0.00e+00	2.32e+00	7.46e+00	0.00e+00	3.19e-03	1.40e-01
chr2	121439059	121456781	ENSMUSG00000046110	0.4888	-	Serinc4	protein_coding	1.37e-07	5.48e-05	-2.574470	7.82e+00	1.17e-02	5.18e+00	1.93e-03	8.04e+00	7.52e+00	7.89e+00	1.36e-02	9.39e-03	1.22e-02	4.46e+00	5.55e+00	5.52e+00	1.08e-03	2.37e-03	2.32e-03
chr8	126981593	126982232	ENSMUSG00000110648	0.4719	-	RP23-382B3.1	processed_pseudogene	1.62e-07	6.32e-05	2.865070	4.64e+00	2.15e-02	5.87e+00	1.62e-01	4.46e+00	3.91e+00	5.55e+00	1.67e-02	1.12e-02	3.67e-02	4.46e+00	4.00e+00	9.16e+00	1.67e-02	1.20e-02	4.57e-01
chr1	37026596	37187613	ENSMUSG00000050122	0.4499	+	Vwa3b	protein_coding	2.13e-07	8.14e-05	3.757209	2.30e+00	3.22e-04	3.86e+00	4.95e-03	3.32e+00	0.00e+00	3.58e+00	4.34e-04	0.00e+00	5.31e-04	1.00e+00	2.32e+00	8.25e+00	4.82e-05	1.93e-04	1.46e-02
chr2	121439010	121444278	ENSMUSG00000027246	0.4881	-	Ell3	protein_coding	2.64e-07	9.85e-05	-2.591882	7.69e+00	7.08e-02	5.01e+00	1.15e-02	7.86e+00	7.42e+00	7.81e+00	7.87e-02	5.79e-02	7.59e-02	4.17e+00	5.39e+00	5.46e+00	5.79e-03	1.40e-02	1.46e-02
chr7	16514400	16515138	ENSMUSG00000101135	0.4899	-	Gm17981	processed_pseudogene	2.82e-07	1.03e-04	5.312883	3.33e-01	2.66e-04	2.43e+00	4.15e-02	0.00e+00	1.00e+00	0.00e+00	0.00e+00	7.97e-04	0.00e+00	0.00e+00	0.00e+00	7.29e+00	0.00e+00	0.00e+00	1.24e-01
chr1	195136811	195176716	ENSMUSG00000026616	0.3693	-	Cr2	protein_coding	3.10e-07	1.10e-04	-2.220925	8.77e+00	4.10e-02	6.40e+00	8.72e-03	8.86e+00	8.70e+00	8.75e+00	4.37e-02	3.90e-02	4.04e-02	6.81e+00	5.39e+00	6.99e+00	1.05e-02	3.86e-03	1.19e-02
chr10	4611593	5005614	ENSMUSG00000019768	0.4108	+	Esr1	protein_coding	3.73e-07	1.30e-04	4.321928	1.86e+00	1.91e-04	4.42e+00	5.17e-03	1.58e+00	2.00e+00	2.00e+00	1.43e-04	2.14e-04	2.14e-04	2.00e+00	3.58e+00	7.67e+00	2.14e-04	7.86e-04	1.45e-02
chr9	20962361	20976781	ENSMUSG00000043895	0.5149	-	S1pr2	protein_coding	4.36e-07	1.49e-04	-2.118462	9.54e+00	8.25e-02	7.38e+00	1.89e-02	9.61e+00	9.24e+00	9.76e+00	8.60e-02	6.63e-02	9.53e-02	7.10e+00	7.12e+00	7.93e+00	1.49e-02	1.52e-02	2.67e-02
chr8	91798525	91802067	ENSMUSG00000031734	0.6091	-	Irx3	protein_coding	5.28e-07	1.77e-04	3.744161	2.99e+00	4.44e-03	4.78e+00	6.70e-02	3.58e+00	2.81e+00	2.58e+00	6.66e-03	3.63e-03	3.03e-03	2.32e+00	3.70e+00	8.31e+00	2.42e-03	7.27e-03	1.91e-01
chr5	110118022	110118849	ENSMUSG00000081865	0.4203	-	Gm15484	processed_pseudogene	5.70e-07	1.87e-04	2.064586	6.82e+00	9.06e-02	7.81e+00	3.82e-01	6.57e+00	6.78e+00	7.12e+00	7.50e-02	8.69e-02	1.10e-01	6.89e+00	6.25e+00	1.03e+01	9.41e-02	5.98e-02	9.91e-01
chr12	113406604	113416324	ENSMUSG00000104213	0.4510	-	Ighd	IG_C_gene	6.07e-07	1.95e-04	-2.060170	9.29e+00	1.81e-01	7.08e+00	4.32e-02	9.51e+00	9.19e+00	9.15e+00	2.10e-01	1.69e-01	1.64e-01	7.66e+00	6.09e+00	7.51e+00	5.80e-02	1.93e-02	5.22e-02
chr13	66874081	66874659	ENSMUSG00000095847	0.4819	+	Gm5451	processed_pseudogene	6.45e-07	2.04e-04	3.286304	3.77e+00	1.01e-02	5.14e+00	1.06e-01	3.91e+00	3.70e+00	3.70e+00	1.12e-02	9.57e-03	9.57e-03	3.17e+00	3.70e+00	8.56e+00	6.38e-03	9.57e-03	3.01e-01
chr6	125460266	125494791	ENSMUSG00000030342	0.5016	-	Cd9	protein_coding	6.67e-07	2.04e-04	1.778495	9.11e+00	2.02e-01	9.97e+00	6.93e-01	8.93e+00	8.60e+00	9.79e+00	1.68e-01	1.33e-01	3.04e-01	8.89e+00	8.70e+00	1.23e+01	1.63e-01	1.43e-01	1.77e+00
chr11	85353167	85826058	ENSMUSG00000059439	0.4320	+	Bcas3	protein_coding	6.73e-07	2.04e-04	2.441392	5.50e+00	4.70e-03	6.64e+00	2.60e-02	5.43e+00	5.13e+00	5.93e+00	4.35e-03	3.52e-03	6.22e-03	4.95e+00	5.55e+00	9.40e+00	3.11e-03	4.77e-03	7.00e-02
chr7	125547269	125548602	ENSMUSG00000108615	0.4205	+	Gm4973	processed_pseudogene	7.79e-07	2.32e-04	4.073249	1.64e+00	2.39e-03	3.86e+00	5.29e-02	0.00e+00	2.32e+00	2.58e+00	0.00e+00	3.19e-03	3.99e-03	3.00e+00	1.00e+00	7.58e+00	5.58e-03	7.97e-04	1.52e-01
chr13	75869537	75943925	ENSMUSG00000021589	0.4098	-	Rhobtb3	protein_coding	8.25e-07	2.42e-04	3.442943	3.40e+00	1.66e-03	5.60e+00	1.98e-02	3.17e+00	3.32e+00	3.70e+00	1.38e-03	1.55e-03	2.06e-03	4.00e+00	4.52e+00	8.27e+00	2.58e-03	3.79e-03	5.30e-02
chr10	80165985	80172786	ENSMUSG00000045193	0.5335	+	Cirbp	protein_coding	8.84e-07	2.54e-04	2.165868	6.52e+00	1.56e-02	7.88e+00	7.07e-02	6.32e+00	6.67e+00	6.57e+00	1.35e-02	1.73e-02	1.61e-02	6.95e+00	6.69e+00	9.99e+00	2.10e-02	1.74e-02	1.74e-01
chr10	60181532	60219260	ENSMUSG00000057337	0.5064	-	Chst3	protein_coding	1.10e-06	3.13e-04	-2.166715	8.21e+00	5.60e-02	5.77e+00	1.23e-02	8.52e+00	7.93e+00	8.16e+00	6.87e-02	4.56e-02	5.37e-02	5.67e+00	4.70e+00	6.94e+00	9.39e-03	4.69e-03	2.29e-02
chr14	45458792	45530118	ENSMUSG00000037712	0.4357	-	Fermt2	protein_coding	1.30e-06	3.60e-04	2.783896	4.29e+00	3.24e-03	6.16e+00	2.33e-02	3.70e+00	4.25e+00	4.91e+00	1.98e-03	2.96e-03	4.77e-03	4.64e+00	5.32e+00	8.50e+00	3.95e-03	6.42e-03	5.94e-02
chr7	139887477	139888351	ENSMUSG00000109710	0.5429	-	Gm4974	processed_pseudogene	1.32e-06	3.60e-04	5.357552	0.00e+00	0.00e+00	3.29e+00	3.19e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	1.00e+00	2.00e+00	6.87e+00	7.97e-04	2.39e-03	9.25e-02
chr9	59145677	59146210	ENSMUSG00000066592	0.5300	-	Gm7589	processed_pseudogene	1.45e-06	3.89e-04	3.329308	3.68e+00	9.57e-03	4.91e+00	1.03e-01	3.91e+00	3.81e+00	3.32e+00	1.12e-02	1.04e-02	7.18e-03	3.00e+00	3.17e+00	8.55e+00	5.58e-03	6.38e-03	2.98e-01
chr19	18581455	18582228	ENSMUSG00000080783	0.5375	+	Gm8250	processed_pseudogene	1.56e-06	4.10e-04	5.066089	3.33e-01	2.66e-04	2.87e+00	3.48e-02	0.00e+00	1.00e+00	0.00e+00	0.00e+00	7.97e-04	0.00e+00	0.00e+00	1.58e+00	7.02e+00	0.00e+00	1.59e-03	1.03e-01
chr3	66562805	66563551	ENSMUSG00000103600	0.4270	-	Gm17952	processed_pseudogene	1.57e-06	4.10e-04	3.950612	1.44e+00	2.66e-03	3.97e+00	5.26e-02	1.00e+00	0.00e+00	3.32e+00	7.97e-04	0.00e+00	7.18e-03	2.00e+00	2.32e+00	7.58e+00	2.39e-03	3.19e-03	1.52e-01
chr7	102549870	102555842	ENSMUSG00000073977	0.4348	+	Olfr549	protein_coding	2.27e-06	5.83e-04	4.564785	8.62e-01	5.38e-04	2.90e+00	2.49e-02	0.00e+00	1.00e+00	1.58e+00	0.00e+00	5.38e-04	1.08e-03	0.00e+00	1.58e+00	7.11e+00	0.00e+00	1.08e-03	7.37e-02
chr17	34238903	34245907	ENSMUSG00000041538	0.4778	+	H2-Ob	protein_coding	2.90e-06	7.32e-04	-1.965235	9.16e+00	1.08e-01	7.15e+00	2.74e-02	9.23e+00	9.04e+00	9.22e+00	1.12e-01	9.87e-02	1.12e-01	7.02e+00	6.79e+00	7.64e+00	2.42e-02	2.06e-02	3.74e-02
chr6	71683298	71683885	ENSMUSG00000108813	0.5187	+	Rpl19-ps9	processed_pseudogene	2.94e-06	7.32e-04	3.861803	1.72e+00	2.66e-03	3.04e+00	4.94e-02	1.00e+00	1.00e+00	3.17e+00	7.97e-04	7.97e-04	6.38e-03	0.00e+00	1.58e+00	7.53e+00	0.00e+00	1.59e-03	1.47e-01
chr14	65968483	65981548	ENSMUSG00000022037	0.5061	+	Clu	protein_coding	3.16e-06	7.73e-04	-1.933587	9.41e+00	9.95e-02	7.40e+00	2.59e-02	9.28e+00	9.63e+00	9.34e+00	9.02e-02	1.15e-01	9.38e-02	7.43e+00	6.74e+00	8.02e+00	2.50e-02	1.54e-02	3.75e-02
chr16	4594713	4624924	ENSMUSG00000014303	0.5304	+	Glis2	protein_coding	3.41e-06	8.23e-04	3.207400	3.66e+00	1.72e-03	5.22e+00	1.71e-02	3.46e+00	3.81e+00	3.70e+00	1.47e-03	1.91e-03	1.77e-03	3.32e+00	4.00e+00	8.34e+00	1.32e-03	2.21e-03	4.77e-02
chr11	98927818	98974942	ENSMUSG00000037992	0.5557	+	Rara	protein_coding	3.72e-06	8.84e-04	2.807355	4.27e+00	4.82e-03	6.13e+00	3.53e-02	4.81e+00	4.09e+00	3.91e+00	6.85e-03	4.06e-03	3.55e-03	4.81e+00	5.09e+00	8.48e+00	6.85e-03	8.37e-03	9.06e-02

Download the DEG result list for Wt_vs_TnfR1.
Download the whole result list for Wt_vs_TnfR1.

DEG table for the contrast TnfR1_vs_ColVICreLtbR

The following table presents the top 10% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast TnfR1_vs_ColVICreLtbR. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right.

chromosome	start	end	gene_id	gc_content	strand	gene_name	biotype	p-value_deseq	FDR_deseq	log2_normalized_fold_change_TnfR1_vs_ColVICreLtbR	log2_normalized_mean_counts_TnfR1	rpgm_normalized_mean_counts_TnfR1	log2_normalized_mean_counts_ColVICreLtbR	rpgm_normalized_mean_counts_ColVICreLtbR	log2_normalized_counts_GK3R155-TnfR1-D4	log2_normalized_counts_GK3R156-TnfR1-D5	log2_normalized_counts_GK3R157-TnfR1-D6	rpgm_normalized_counts_GK3R155-TnfR1-D4	rpgm_normalized_counts_GK3R156-TnfR1-D5	rpgm_normalized_counts_GK3R157-TnfR1-D6	log2_normalized_counts_GK3R161-ColVICreLtbR-L10	log2_normalized_counts_GK3R162-ColVICreLtbR-L11	log2_normalized_counts_GK3R163-ColVICreLtbR-L12	rpgm_normalized_counts_GK3R161-ColVICreLtbR-L10	rpgm_normalized_counts_GK3R162-ColVICreLtbR-L11	rpgm_normalized_counts_GK3R163-ColVICreLtbR-L12
chr9	55148854	55207529	ENSMUSG00000032307	0.4028	+	Ube2q2	protein_coding	3.16e-29	5.18e-25	-5.840104	6.49e+00	3.35e-01	3.58e+00	5.49e-03	4.46e+00	3.58e+00	1.14e+01	7.52e-03	3.94e-03	9.93e-01	2.81e+00	2.81e+00	5.13e+00	2.15e-03	2.15e-03	1.22e-02
chr3	95410346	95411207	ENSMUSG00000096177	0.5580	-	Gm5070	processed_pseudogene	6.83e-27	5.60e-23	-6.101038	6.23e+00	7.66e-01	3.37e+00	1.04e-02	2.00e+00	5.21e+00	1.15e+01	2.39e-03	2.87e-02	2.27e+00	4.52e+00	1.58e+00	4.00e+00	1.75e-02	1.59e-03	1.20e-02
chr1	87124973	87127912	ENSMUSG00000036500	0.5670	+	Akp3	protein_coding	3.78e-25	2.07e-21	7.673604	6.67e-01	3.99e-04	6.45e+00	1.62e-01	0.00e+00	2.00e+00	0.00e+00	0.00e+00	1.20e-03	0.00e+00	1.00e+00	8.70e+00	9.66e+00	3.99e-04	1.65e-01	3.22e-01
chr9	108358202	108359069	ENSMUSG00000104280	0.5703	-	Rps2-ps11	processed_pseudogene	9.34e-19	3.83e-15	-6.026800	5.55e+00	3.46e-01	2.10e+00	4.52e-03	1.58e+00	4.75e+00	1.03e+01	1.59e-03	2.07e-02	1.02e+00	3.70e+00	2.58e+00	0.00e+00	9.57e-03	3.99e-03	0.00e+00
chrX	162961992	162964599	ENSMUSG00000040808	0.4555	-	S100g	protein_coding	3.55e-18	1.17e-14	4.903274	6.14e+00	5.01e-02	1.02e+01	1.52e+00	6.30e+00	5.91e+00	6.21e+00	5.58e-02	4.22e-02	5.22e-02	9.38e+00	9.00e+00	1.23e+01	4.76e-01	3.66e-01	3.72e+00
chr6	79048116	79048824	ENSMUSG00000107772	0.4993	+	Gm5311	processed_pseudogene	1.32e-16	3.61e-13	-6.000000	4.27e+00	2.71e-01	1.72e+00	3.46e-03	0.00e+00	2.81e+00	9.99e+00	0.00e+00	4.78e-03	8.09e-01	3.58e+00	1.58e+00	0.00e+00	8.77e-03	1.59e-03	0.00e+00
chr13	67810246	67811200	ENSMUSG00000097906	0.5560	+	Gm9625	processed_pseudogene	1.98e-16	4.64e-13	-3.859463	9.63e+00	2.85e+00	7.87e+00	1.95e-01	7.97e+00	7.58e+00	1.33e+01	1.99e-01	1.52e-01	8.19e+00	8.49e+00	7.44e+00	7.68e+00	2.85e-01	1.38e-01	1.63e-01
chr15	79823896	79834688	ENSMUSG00000089715	0.5498	-	Cbx6	protein_coding	7.72e-16	1.58e-12	-3.732025	9.07e+00	2.51e-01	7.33e+00	1.88e-02	7.29e+00	7.31e+00	1.26e+01	1.79e-02	1.83e-02	7.17e-01	7.66e+00	7.13e+00	7.21e+00	2.33e-02	1.61e-02	1.70e-02
chr5	73476447	73477353	ENSMUSG00000082039	0.5413	-	Gm15653	processed_pseudogene	9.24e-16	1.68e-12	-6.916477	4.84e+00	1.60e-01	5.28e-01	5.32e-04	2.00e+00	3.32e+00	9.20e+00	2.39e-03	7.18e-03	4.70e-01	1.58e+00	0.00e+00	0.00e+00	1.59e-03	0.00e+00	0.00e+00
chr6	125460266	125494791	ENSMUSG00000030342	0.5016	-	Cd9	protein_coding	2.59e-15	4.24e-12	-3.739676	9.97e+00	6.93e-01	7.19e+00	5.16e-02	8.89e+00	8.70e+00	1.23e+01	1.63e-01	1.43e-01	1.77e+00	7.43e+00	7.46e+00	6.69e+00	5.92e-02	6.03e-02	3.51e-02
chr11	53567379	53601967	ENSMUSG00000018395	0.4385	+	Kif3a	protein_coding	1.19e-14	1.77e-11	3.283963	7.74e+00	2.24e-02	1.10e+01	2.19e-01	7.56e+00	7.86e+00	7.79e+00	1.97e-02	2.42e-02	2.32e-02	1.11e+01	1.10e+01	1.10e+01	2.24e-01	2.22e-01	2.10e-01
chr2	143150830	143151630	ENSMUSG00000083047	0.4906	-	Gm14082	processed_pseudogene	2.12e-14	2.89e-11	-4.562861	6.23e+00	4.64e-01	3.55e+00	1.89e-02	3.00e+00	4.95e+00	1.07e+01	5.58e-03	2.39e-02	1.36e+00	6.00e+00	2.32e+00	2.32e+00	5.02e-02	3.19e-03	3.19e-03
chr13	8940336	8940977	ENSMUSG00000061988	0.5171	-	Rpl10a-ps2	processed_pseudogene	4.00e-14	5.05e-11	-4.815917	5.79e+00	3.59e-01	2.81e+00	1.20e-02	3.00e+00	4.00e+00	1.04e+01	5.58e-03	1.20e-02	1.06e+00	5.25e+00	3.17e+00	0.00e+00	2.95e-02	6.38e-03	0.00e+00
chr9	50494525	50505482	ENSMUSG00000032068	0.4575	+	Plet1	protein_coding	1.50e-12	1.75e-09	-3.258986	8.97e+00	1.53e-01	5.76e+00	1.57e-02	9.25e+00	8.08e+00	9.56e+00	1.71e-01	7.58e-02	2.12e-01	5.32e+00	5.55e+00	6.39e+00	1.09e-02	1.29e-02	2.33e-02
chr6	72355447	72359762	ENSMUSG00000055912	0.5582	+	Tmem150a	protein_coding	2.91e-12	3.18e-09	-4.264703	5.74e+00	9.81e-02	4.11e+00	4.83e-03	3.00e+00	4.25e+00	9.98e+00	1.99e-03	5.12e-03	2.87e-01	3.70e+00	4.64e+00	4.00e+00	3.41e-03	6.82e-03	4.26e-03
chr5	148182899	148184377	ENSMUSG00000066554	0.5423	-	Gm10167	processed_pseudogene	5.17e-12	5.30e-09	-3.825560	6.99e+00	3.38e-01	4.81e+00	2.31e-02	4.58e+00	6.17e+00	1.02e+01	1.83e-02	5.66e-02	9.40e-01	5.49e+00	4.17e+00	4.75e+00	3.51e-02	1.36e-02	2.07e-02
chrX	90744546	90745062	ENSMUSG00000084289	0.4565	-	Gm6977	processed_pseudogene	6.41e-12	6.18e-09	-3.142402	9.90e+00	2.41e+00	8.25e+00	2.73e-01	7.89e+00	8.75e+00	1.30e+01	1.89e-01	3.43e-01	6.71e+00	7.95e+00	9.19e+00	7.62e+00	1.96e-01	4.66e-01	1.56e-01
chr2	144142488	144143373	ENSMUSG00000082480	0.5756	-	Gm11687	processed_pseudogene	1.78e-11	1.62e-08	-4.725284	5.26e+00	2.17e-01	3.08e+00	7.44e-03	3.32e+00	2.81e+00	9.65e+00	7.18e-03	4.78e-03	6.40e-01	4.32e+00	2.58e+00	2.32e+00	1.52e-02	3.99e-03	3.19e-03
chr6	146782469	146783274	ENSMUSG00000107788	0.5633	+	Gm6266	processed_pseudogene	7.35e-11	6.34e-08	-5.709658	4.81e+00	1.24e-01	1.19e+00	1.59e-03	2.58e+00	3.00e+00	8.84e+00	3.99e-03	5.58e-03	3.64e-01	2.58e+00	1.00e+00	0.00e+00	3.99e-03	7.97e-04	0.00e+00
chr1	173274382	173277777	ENSMUSG00000079180	0.4031	-	Mptx2	protein_coding	9.04e-11	7.42e-08	2.929376	9.79e+00	6.90e-01	1.27e+01	5.26e+00	9.77e+00	1.03e+01	9.32e+00	6.53e-01	9.40e-01	4.78e-01	1.20e+01	1.30e+01	1.31e+01	3.03e+00	6.14e+00	6.62e+00
chr10	79890853	79892656	ENSMUSG00000061780	0.5649	+	Cfd	protein_coding	1.09e-10	8.54e-08	5.720122	1.06e+00	1.01e-03	5.01e+00	9.21e-02	0.00e+00	1.58e+00	1.58e+00	0.00e+00	1.51e-03	1.51e-03	0.00e+00	7.32e+00	7.70e+00	0.00e+00	1.20e-01	1.56e-01
chr5	21543559	21575904	ENSMUSG00000039883	0.4349	+	Lrrc17	protein_coding	1.19e-10	8.84e-08	2.803802	7.85e+00	7.58e-02	1.07e+01	5.31e-01	7.97e+00	7.66e+00	7.94e+00	8.16e-02	6.59e-02	8.00e-02	1.06e+01	1.05e+01	1.09e+01	5.00e-01	4.78e-01	6.17e-01
chr7	5127396	5129356	ENSMUSG00000109495	0.5079	-	RP23-419K14.11	processed_pseudogene	3.13e-10	2.17e-07	-2.983162	7.77e+00	4.97e-01	6.27e+00	6.22e-02	6.00e+00	6.57e+00	1.07e+01	5.02e-02	7.50e-02	1.37e+00	6.55e+00	5.78e+00	6.46e+00	7.42e-02	4.31e-02	6.94e-02
chr7	110627661	110629820	ENSMUSG00000030790	0.5301	+	Adm	protein_coding	3.17e-10	2.17e-07	-3.776622	8.05e+00	8.79e-02	3.24e+00	6.12e-03	8.22e+00	7.41e+00	8.52e+00	9.40e-02	5.35e-02	1.16e-01	5.25e+00	4.46e+00	0.00e+00	1.17e-02	6.65e-03	0.00e+00
chr9	108403611	108428484	ENSMUSG00000047220	0.4314	-	Ccdc36	protein_coding	4.49e-10	2.95e-07	2.738251	8.47e+00	1.47e-01	1.12e+01	9.85e-01	8.46e+00	8.57e+00	8.38e+00	1.46e-01	1.57e-01	1.38e-01	1.10e+01	1.10e+01	1.16e+01	8.47e-01	8.60e-01	1.25e+00
chr1	55127297	55128287	ENSMUSG00000089670	0.5590	+	Gm16581	processed_pseudogene	6.51e-10	4.10e-07	-3.916979	5.10e+00	2.28e-01	4.09e+00	1.44e-02	3.00e+00	2.58e+00	9.73e+00	5.58e-03	3.99e-03	6.75e-01	4.95e+00	3.32e+00	4.00e+00	2.39e-02	7.18e-03	1.20e-02
chr5	95956951	95961068	ENSMUSG00000023078	0.3941	+	Cxcl13	protein_coding	7.97e-10	4.84e-07	3.010569	4.46e+00	1.05e-02	7.30e+00	8.84e-02	4.91e+00	4.00e+00	4.46e+00	1.41e-02	7.30e-03	1.02e-02	6.11e+00	8.04e+00	7.75e+00	3.31e-02	1.28e-01	1.05e-01
chr1	36548639	36558349	ENSMUSG00000026121	0.5748	-	Sema4c	protein_coding	1.02e-09	5.96e-07	-3.652345	6.26e+00	3.55e-02	4.31e+00	2.70e-03	4.70e+00	4.58e+00	9.49e+00	3.49e-03	3.21e-03	9.99e-02	4.17e+00	4.00e+00	4.75e+00	2.37e-03	2.09e-03	3.63e-03
chr3	152153447	152154116	ENSMUSG00000084343	0.5194	+	Gm16198	processed_pseudogene	1.30e-09	7.20e-07	-4.307055	5.05e+00	2.04e-01	3.29e+00	9.57e-03	2.00e+00	3.58e+00	9.56e+00	2.39e-03	8.77e-03	6.02e-01	4.75e+00	2.81e+00	2.32e+00	2.07e-02	4.78e-03	3.19e-03
chr7	103826534	103828096	ENSMUSG00000052305	0.4651	-	Hbb-bs	protein_coding	1.32e-09	7.20e-07	2.652939	5.97e+00	2.31e-02	8.55e+00	1.47e-01	6.21e+00	6.02e+00	5.67e+00	2.70e-02	2.37e-02	1.85e-02	9.09e+00	8.69e+00	7.88e+00	2.02e-01	1.53e-01	8.66e-02
chr1	171437535	171464603	ENSMUSG00000038235	0.4647	+	F11r	protein_coding	1.37e-09	7.27e-07	-3.212034	1.35e+01	2.96e+00	1.02e+01	3.19e-01	1.37e+01	1.37e+01	1.32e+01	3.31e+00	3.25e+00	2.32e+00	1.09e+01	1.02e+01	9.68e+00	4.67e-01	2.87e-01	2.04e-01
chr14	51763878	51773590	ENSMUSG00000060615	0.4375	-	Ang4	protein_coding	2.26e-09	1.16e-06	2.336185	8.73e+00	3.37e-01	1.12e+01	1.70e+00	8.86e+00	9.58e+00	7.75e+00	3.25e-01	5.36e-01	1.50e-01	1.15e+01	1.12e+01	1.10e+01	2.01e+00	1.63e+00	1.48e+00
chr11	100228845	100232078	ENSMUSG00000084257	0.4858	-	Gm11597	unprocessed_pseudogene	2.98e-09	1.48e-06	-3.740396	4.10e+00	2.23e-01	4.15e+00	1.59e-02	0.00e+00	2.58e+00	9.71e+00	0.00e+00	3.99e-03	6.65e-01	5.13e+00	3.00e+00	4.32e+00	2.71e-02	5.58e-03	1.52e-02
chr2	9857078	9890034	ENSMUSG00000015619	0.4826	-	Gata3	protein_coding	3.16e-09	1.53e-06	-3.612977	6.13e+00	4.20e-02	4.49e+00	3.29e-03	4.25e+00	4.52e+00	9.63e+00	2.74e-03	3.34e-03	1.20e-01	4.75e+00	4.39e+00	4.32e+00	3.95e-03	3.04e-03	2.89e-03
chr11	31357307	31370074	ENSMUSG00000020303	0.4995	-	Stc2	protein_coding	5.94e-09	2.78e-06	-2.823216	5.93e+00	5.99e-02	5.59e+00	8.33e-03	3.91e+00	3.70e+00	1.02e+01	2.12e-03	1.82e-03	1.76e-01	6.67e+00	4.95e+00	5.13e+00	1.53e-02	4.54e-03	5.15e-03
chr3	57841895	57848079	ENSMUSG00000027805	0.4666	-	Pfn2	protein_coding	6.31e-09	2.88e-06	-2.954478	7.16e+00	9.81e-02	5.75e+00	1.25e-02	4.39e+00	6.95e+00	1.01e+01	4.61e-03	2.84e-02	2.61e-01	5.36e+00	6.04e+00	5.86e+00	9.23e-03	1.50e-02	1.31e-02
chr15	59210908	59211720	ENSMUSG00000025922	0.4625	+	Gm5045	processed_pseudogene	8.15e-09	3.62e-06	-3.504043	5.17e+00	1.65e-01	3.76e+00	1.38e-02	2.81e+00	3.46e+00	9.24e+00	4.78e-03	7.97e-03	4.82e-01	4.32e+00	2.00e+00	4.95e+00	1.52e-02	2.39e-03	2.39e-02
chr8	21702519	21703645	ENSMUSG00000058618	0.4295	-	AY761184	protein_coding	9.56e-09	4.13e-06	2.272509	9.69e+00	6.67e-01	1.21e+01	3.23e+00	1.03e+01	9.97e+00	8.76e+00	9.52e-01	7.33e-01	3.17e-01	1.23e+01	1.22e+01	1.18e+01	3.60e+00	3.46e+00	2.62e+00
chr8	65131033	65132314	ENSMUSG00000109935	0.4836	-	Gm7619	processed_pseudogene	1.06e-08	4.45e-06	-5.095157	3.95e+00	9.91e-02	1.53e+00	2.13e-03	1.00e+00	2.32e+00	8.53e+00	7.97e-04	3.19e-03	2.93e-01	2.00e+00	2.58e+00	0.00e+00	2.39e-03	3.99e-03	0.00e+00
chr11	43670801	43671484	ENSMUSG00000083662	0.5044	+	Gm12152	processed_pseudogene	1.09e-08	4.45e-06	-5.523562	4.36e+00	8.48e-02	1.00e+00	1.06e-03	2.00e+00	2.81e+00	8.28e+00	2.39e-03	4.78e-03	2.47e-01	2.00e+00	1.00e+00	0.00e+00	2.39e-03	7.97e-04	0.00e+00
chr14	70583296	70599835	ENSMUSG00000022095	0.5158	-	Fam160b2	protein_coding	1.12e-08	4.48e-06	-2.751462	9.82e+00	3.03e-01	7.02e+00	4.47e-02	9.70e+00	1.01e+01	9.65e+00	2.76e-01	3.66e-01	2.67e-01	7.30e+00	7.36e+00	6.39e+00	5.23e-02	5.43e-02	2.76e-02
chr18	7868832	7973547	ENSMUSG00000024283	0.3823	+	Wac	protein_coding	1.26e-08	4.76e-06	-2.453541	8.85e+00	9.72e-02	7.75e+00	1.77e-02	7.39e+00	7.51e+00	1.16e+01	1.38e-02	1.49e-02	2.63e-01	7.87e+00	7.59e+00	7.78e+00	1.92e-02	1.58e-02	1.80e-02
chr8	126981593	126982232	ENSMUSG00000110648	0.4719	-	RP23-382B3.1	processed_pseudogene	1.26e-08	4.76e-06	-3.613532	5.87e+00	1.62e-01	3.88e+00	1.25e-02	4.46e+00	4.00e+00	9.16e+00	1.67e-02	1.20e-02	4.57e-01	4.52e+00	2.81e+00	4.32e+00	1.75e-02	4.78e-03	1.52e-02
chr5	66890366	66890876	ENSMUSG00000082420	0.5245	+	Gm6517	processed_pseudogene	1.28e-08	4.76e-06	-4.446886	4.90e+00	1.21e-01	2.74e+00	4.78e-03	3.32e+00	2.58e+00	8.79e+00	7.18e-03	3.99e-03	3.52e-01	2.58e+00	3.32e+00	2.32e+00	3.99e-03	7.18e-03	3.19e-03
chr17	39843013	39846341	ENSMUSG00000097971	0.6912	+	Gm26917	lincRNA	2.41e-08	8.59e-06	3.071840	6.21e+00	6.94e-02	9.37e+00	5.89e-01	4.81e+00	6.39e+00	7.43e+00	2.00e-02	6.15e-02	1.27e-01	8.78e+00	8.76e+00	1.06e+01	3.26e-01	3.21e-01	1.12e+00
chr6	78422711	78428667	ENSMUSG00000059654	0.3937	+	Reg1	protein_coding	2.41e-08	8.59e-06	2.613728	4.81e+00	1.09e-01	9.09e+00	6.72e-01	3.58e+00	8.86e+00	2.00e+00	7.56e-03	3.18e-01	2.06e-03	6.32e+00	1.05e+01	1.05e+01	5.43e-02	9.66e-01	9.97e-01
chr11	97159714	97187881	ENSMUSG00000001440	0.4411	-	Kpnb1	protein_coding	2.89e-08	1.01e-05	-2.500390	1.03e+01	2.77e-01	8.04e+00	4.88e-02	9.31e+00	1.00e+01	1.15e+01	1.15e-01	1.89e-01	5.27e-01	8.30e+00	8.15e+00	7.68e+00	5.74e-02	5.19e-02	3.73e-02
chr13	41182495	41220405	ENSMUSG00000021364	0.4502	-	Elovl2	protein_coding	4.84e-08	1.65e-05	-4.282934	4.45e+00	4.78e-02	1.92e+00	2.22e-03	2.58e+00	1.58e+00	9.17e+00	1.23e-03	4.93e-04	1.42e-01	4.75e+00	1.00e+00	0.00e+00	6.42e-03	2.47e-04	0.00e+00
chr17	37193892	37196095	ENSMUSG00000035186	0.4111	+	Ubd	protein_coding	9.31e-08	3.12e-05	-2.491652	1.21e+01	2.74e+00	9.61e+00	4.87e-01	1.22e+01	1.18e+01	1.24e+01	2.87e+00	2.11e+00	3.25e+00	9.98e+00	9.32e+00	9.54e+00	6.16e-01	3.90e-01	4.56e-01
chr8	107388225	107403206	ENSMUSG00000003849	0.4688	-	Nqo1	protein_coding	1.06e-07	3.47e-05	-2.636214	7.68e+00	2.37e-01	6.14e+00	3.77e-02	6.64e+00	6.25e+00	1.02e+01	5.36e-02	4.06e-02	6.17e-01	6.07e+00	6.32e+00	6.02e+00	3.57e-02	4.27e-02	3.46e-02
chr8	21325887	21327020	ENSMUSG00000074437	0.4321	-	Defa29	protein_coding	1.09e-07	3.51e-05	2.049176	9.72e+00	6.61e-01	1.18e+01	2.74e+00	1.04e+01	9.77e+00	9.05e+00	9.58e-01	6.37e-01	3.88e-01	1.22e+01	1.19e+01	1.15e+01	3.36e+00	2.79e+00	2.06e+00
chr1	57774162	57948394	ENSMUSG00000038305	0.4336	+	Spats2l	protein_coding	1.66e-07	5.25e-05	-2.183066	7.87e+00	2.65e-02	5.99e+00	5.78e-03	7.09e+00	6.67e+00	9.85e+00	9.29e-03	6.95e-03	6.32e-02	4.25e+00	6.63e+00	7.10e+00	1.24e-03	6.74e-03	9.35e-03
chr6	142785204	142804502	ENSMUSG00000048473	0.4434	-	Sult6b2	protein_coding	1.79e-07	5.54e-05	3.185867	4.07e+00	4.44e-03	7.17e+00	4.18e-02	3.46e+00	5.95e+00	2.81e+00	1.73e-03	1.05e-02	1.04e-03	4.58e+00	8.43e+00	8.49e+00	3.98e-03	5.95e-02	6.19e-02
chr19	32122727	32389714	ENSMUSG00000040451	0.4386	-	Sgms1	protein_coding	2.21e-07	6.72e-05	-2.158296	1.05e+01	8.67e-02	8.26e+00	1.94e-02	1.03e+01	1.05e+01	1.06e+01	7.78e-02	9.03e-02	9.21e-02	7.71e+00	8.59e+00	8.49e+00	1.28e-02	2.35e-02	2.19e-02
chr2	110418170	110419619	ENSMUSG00000083320	0.4497	-	Gm13935	processed_pseudogene	2.49e-07	7.42e-05	-3.650877	5.89e+00	1.36e-01	3.72e+00	1.01e-02	4.25e+00	4.52e+00	8.89e+00	1.44e-02	1.75e-02	3.76e-01	4.25e+00	3.32e+00	3.58e+00	1.44e-02	7.18e-03	8.77e-03
chr9	59145677	59146210	ENSMUSG00000066592	0.5300	-	Gm7589	processed_pseudogene	2.87e-07	8.41e-05	-3.859822	4.91e+00	1.03e-01	3.11e+00	6.38e-03	3.00e+00	3.17e+00	8.55e+00	5.58e-03	6.38e-03	2.98e-01	3.58e+00	2.58e+00	3.17e+00	8.77e-03	3.99e-03	6.38e-03
chr10	80165985	80172786	ENSMUSG00000045193	0.5335	+	Cirbp	protein_coding	4.34e-07	1.25e-04	-2.725022	7.88e+00	7.07e-02	5.75e+00	1.05e-02	6.95e+00	6.69e+00	9.99e+00	2.10e-02	1.74e-02	1.74e-01	6.75e+00	5.73e+00	4.75e+00	1.83e-02	8.89e-03	4.45e-03
chr6	82725025	82774454	ENSMUSG00000000628	0.4908	-	Hk2	protein_coding	4.69e-07	1.33e-04	-1.762418	9.69e+00	1.73e-01	7.62e+00	5.10e-02	9.64e+00	9.53e+00	9.91e+00	1.66e-01	1.54e-01	2.00e-01	6.19e+00	7.97e+00	8.69e+00	1.50e-02	5.22e-02	8.58e-02
chr12	76533560	76579039	ENSMUSG00000052609	0.5023	+	Plekhg3	protein_coding	6.24e-07	1.73e-04	-2.330001	9.70e+00	4.43e-01	7.33e+00	8.77e-02	9.59e+00	9.66e+00	9.86e+00	4.07e-01	4.30e-01	4.92e-01	7.85e+00	7.08e+00	7.06e+00	1.22e-01	7.11e-02	7.00e-02
chr17	39846958	39848788	ENSMUSG00000098178	0.6019	+	Gm42418	lincRNA	7.11e-07	1.93e-04	2.452792	5.94e+00	5.18e-02	8.28e+00	2.87e-01	5.52e+00	6.69e+00	5.61e+00	3.59e-02	8.13e-02	3.83e-02	7.11e+00	9.07e+00	8.67e+00	1.09e-01	4.28e-01	3.25e-01
chr6	128992952	129008040	ENSMUSG00000087150	0.4245	+	BC064078	transcribed_unprocessed_pseudogene	7.16e-07	1.93e-04	-4.593525	5.80e+00	4.15e-02	1.06e+00	1.00e-03	6.07e+00	5.67e+00	5.67e+00	4.95e-02	3.75e-02	3.75e-02	1.58e+00	1.58e+00	0.00e+00	1.50e-03	1.50e-03	0.00e+00
chr2	174284320	174346744	ENSMUSG00000027523	0.4795	+	Gnas	protein_coding	7.89e-07	2.09e-04	-1.848231	1.10e+01	9.87e-02	8.81e+00	2.74e-02	1.11e+01	1.11e+01	1.08e+01	1.07e-01	1.04e-01	8.45e-02	7.20e+00	9.54e+00	9.68e+00	7.00e-03	3.57e-02	3.94e-02
chr12	113325240	113330523	ENSMUSG00000076614	0.5068	-	Ighg1	IG_C_gene	1.08e-06	2.82e-04	2.761840	2.82e+00	1.70e-03	5.67e+00	1.30e-02	3.00e+00	2.00e+00	3.46e+00	1.79e-03	7.67e-04	2.56e-03	5.93e+00	5.21e+00	5.86e+00	1.53e-02	9.20e-03	1.46e-02
chr8	33652523	33698163	ENSMUSG00000031584	0.4579	+	Gsr	protein_coding	1.10e-06	2.82e-04	-1.718847	1.04e+01	3.04e-01	8.50e+00	9.21e-02	1.06e+01	1.07e+01	1.01e+01	3.25e-01	3.51e-01	2.35e-01	7.33e+00	8.72e+00	9.45e+00	3.46e-02	9.11e-02	1.51e-01
chr11	102194432	102230166	ENSMUSG00000008855	0.5497	-	Hdac5	protein_coding	1.26e-06	3.17e-04	2.189034	5.79e+00	1.70e-03	7.87e+00	7.86e-03	5.70e+00	5.29e+00	6.39e+00	1.51e-03	1.13e-03	2.46e-03	8.73e+00	7.99e+00	6.88e+00	1.26e-02	7.50e-03	3.47e-03
chr2	24336853	24351494	ENSMUSG00000026981	0.4277	+	Il1rn	protein_coding	1.63e-06	4.06e-04	-2.143978	9.87e+00	1.68e-01	7.78e+00	3.79e-02	1.02e+01	9.23e+00	1.02e+01	1.96e-01	1.03e-01	2.06e-01	8.06e+00	7.67e+00	7.62e+00	4.54e-02	3.48e-02	3.36e-02
chr10	79664574	79668536	ENSMUSG00000020310	0.5193	+	Madcam1	protein_coding	1.68e-06	4.11e-04	2.298586	5.69e+00	3.72e-02	8.04e+00	1.86e-01	5.49e+00	5.32e+00	6.27e+00	3.09e-02	2.74e-02	5.34e-02	7.83e+00	8.22e+00	8.09e+00	1.59e-01	2.09e-01	1.90e-01
chr13	110395044	110400844	ENSMUSG00000021701	0.4613	+	Plk2	protein_coding	1.71e-06	4.13e-04	-3.929611	4.39e+00	5.64e-02	2.77e+00	3.20e-03	3.32e+00	1.58e+00	8.26e+00	4.80e-03	1.07e-03	1.63e-01	3.17e+00	2.81e+00	2.32e+00	4.27e-03	3.20e-03	2.13e-03
chr4	63367125	63403354	ENSMUSG00000039158	0.5253	-	Akna	protein_coding	1.82e-06	4.33e-04	-2.155991	9.69e+00	2.50e-01	7.57e+00	5.59e-02	9.63e+00	9.26e+00	1.02e+01	2.31e-01	1.78e-01	3.41e-01	7.80e+00	7.69e+00	7.21e+00	6.47e-02	6.01e-02	4.29e-02
chr8	21095074	21096050	ENSMUSG00000061958	0.4289	-	Gm14851	protein_coding	1.85e-06	4.34e-04	1.854093	1.01e+01	8.75e-01	1.19e+01	3.16e+00	1.04e+01	1.02e+01	9.54e+00	1.11e+00	9.23e-01	5.93e-01	1.21e+01	1.21e+01	1.16e+01	3.43e+00	3.55e+00	2.51e+00
chr10	86692119	86693095	ENSMUSG00000084899	0.4063	-	Gm15344	processed_transcript	1.89e-06	4.36e-04	-2.032543	9.47e+00	5.71e-01	7.03e+00	1.39e-01	9.21e+00	9.58e+00	9.63e+00	4.71e-01	6.09e-01	6.33e-01	5.43e+00	8.32e+00	7.35e+00	3.35e-02	2.54e-01	1.29e-01
chr9	64173375	64178666	ENSMUSG00000032399	0.4271	+	Rpl4	protein_coding	2.03e-06	4.63e-04	-2.066942	1.14e+01	9.59e-01	9.37e+00	2.29e-01	1.14e+01	1.11e+01	1.18e+01	9.15e-01	7.31e-01	1.23e+00	9.27e+00	9.48e+00	9.38e+00	2.12e-01	2.46e-01	2.28e-01
chr11	76406952	76416292	ENSMUSG00000020843	0.4669	+	Timm22	protein_coding	2.60e-06	5.81e-04	2.007632	9.20e+00	1.05e-01	1.12e+01	4.24e-01	8.90e+00	9.51e+00	9.19e+00	8.43e-02	1.29e-01	1.03e-01	1.10e+01	1.11e+01	1.15e+01	3.71e-01	3.98e-01	5.03e-01
chr6	119479668	119482630	ENSMUSG00000030019	0.5491	+	Fbxl14	protein_coding	2.65e-06	5.81e-04	-1.865915	1.03e+01	5.38e-01	8.15e+00	1.47e-01	9.63e+00	1.08e+01	1.06e+01	3.09e-01	7.14e-01	5.92e-01	6.39e+00	9.24e+00	8.81e+00	3.23e-02	2.35e-01	1.75e-01
chr11	110025634	110095978	ENSMUSG00000041828	0.3985	-	Abca8a	protein_coding	2.68e-06	5.81e-04	3.011227	4.32e+00	2.48e-03	7.40e+00	2.09e-02	4.25e+00	5.00e+00	3.70e+00	2.20e-03	3.78e-03	1.46e-03	7.20e+00	7.19e+00	7.80e+00	1.78e-02	1.77e-02	2.71e-02
chr2	174760619	174784042	ENSMUSG00000027524	0.4824	+	Edn3	protein_coding	2.69e-06	5.81e-04	-1.906108	9.81e+00	2.73e-01	7.87e+00	7.25e-02	9.52e+00	1.03e+01	9.65e+00	2.17e-01	3.63e-01	2.37e-01	7.21e+00	8.16e+00	8.24e+00	4.35e-02	8.47e-02	8.94e-02
chr1	134405559	134411740	ENSMUSG00000026456	0.4935	+	Cyb5r1	protein_coding	3.05e-06	6.49e-04	-2.369546	9.00e+00	4.27e-02	6.53e+00	8.20e-03	9.10e+00	9.07e+00	8.82e+00	4.58e-02	4.49e-02	3.75e-02	7.23e+00	6.44e+00	5.93e+00	1.24e-02	7.17e-03	5.00e-03
chr11	48861968	48871683	ENSMUSG00000046879	0.4576	-	Irgm1	protein_coding	3.64e-06	7.59e-04	-1.835580	9.37e+00	2.19e-01	5.94e+00	6.10e-02	9.14e+00	9.67e+00	9.32e+00	1.83e-01	2.65e-01	2.08e-01	1.58e+00	8.35e+00	7.88e+00	6.53e-04	1.06e-01	7.64e-02
chr8	21455445	21456560	ENSMUSG00000079114	0.4265	-	Gm7849	protein_coding	3.65e-06	7.59e-04	1.872527	1.15e+01	2.24e+00	1.34e+01	8.20e+00	1.19e+01	1.15e+01	1.12e+01	2.87e+00	2.12e+00	1.72e+00	1.39e+01	1.33e+01	1.29e+01	1.15e+01	7.37e+00	5.68e+00
chr8	68880491	68907448	ENSMUSG00000015568	0.4217	+	Lpl	protein_coding	3.72e-06	7.62e-04	3.079727	4.46e+00	2.36e-03	7.40e+00	2.08e-02	4.46e+00	4.46e+00	4.46e+00	2.36e-03	2.36e-03	2.36e-03	6.49e+00	7.67e+00	8.05e+00	9.98e-03	2.27e-02	2.96e-02
chr6	40471352	40484700	ENSMUSG00000029911	0.3942	+	Ssbp1	protein_coding	3.82e-06	7.74e-04	-1.742795	9.69e+00	7.79e-02	7.77e+00	2.32e-02	9.77e+00	9.73e+00	9.56e+00	8.22e-02	8.03e-02	7.13e-02	6.67e+00	8.20e+00	8.43e+00	9.53e-03	2.78e-02	3.24e-02
chr16	4594713	4624924	ENSMUSG00000014303	0.5304	+	Glis2	protein_coding	5.82e-06	1.16e-03	-3.811471	5.22e+00	1.71e-02	2.39e+00	1.08e-03	3.32e+00	4.00e+00	8.34e+00	1.32e-03	2.21e-03	4.77e-02	3.70e+00	3.46e+00	0.00e+00	1.77e-03	1.47e-03	0.00e+00
chr5	8660077	8748575	ENSMUSG00000040584	0.3991	+	Abcb1a	protein_coding	5.98e-06	1.18e-03	-2.000763	1.03e+01	2.64e-01	8.29e+00	6.57e-02	9.89e+00	1.04e+01	1.06e+01	1.98e-01	2.77e-01	3.16e-01	8.41e+00	8.35e+00	8.13e+00	7.08e-02	6.80e-02	5.84e-02
chr6	108107028	108185582	ENSMUSG00000030101	0.4304	-	Sumf1	protein_coding	7.18e-06	1.40e-03	-2.319203	8.44e+00	6.59e-02	6.05e+00	1.31e-02	8.25e+00	8.78e+00	8.29e+00	5.68e-02	8.25e-02	5.85e-02	6.36e+00	6.51e+00	5.29e+00	1.52e-02	1.69e-02	7.12e-03
chr3	66562805	66563551	ENSMUSG00000103600	0.4270	-	Gm17952	processed_pseudogene	8.18e-06	1.58e-03	-4.191620	3.97e+00	5.26e-02	1.55e+00	2.13e-03	2.00e+00	2.32e+00	7.58e+00	2.39e-03	3.19e-03	1.52e-01	2.32e+00	0.00e+00	2.32e+00	3.19e-03	0.00e+00	3.19e-03
chr2	119187517	119188261	ENSMUSG00000081572	0.4886	+	Gm14138	processed_pseudogene	8.50e-06	1.62e-03	-3.133856	4.71e+00	8.32e-02	3.55e+00	8.77e-03	2.32e+00	3.58e+00	8.22e+00	3.19e-03	8.77e-03	2.38e-01	3.32e+00	3.32e+00	4.00e+00	7.18e-03	7.18e-03	1.20e-02
chr17	36029773	36032855	ENSMUSG00000067212	0.5414	-	H2-T23	protein_coding	9.46e-06	1.78e-03	-1.586008	1.04e+01	4.72e-01	7.85e+00	1.57e-01	1.00e+01	1.07e+01	1.05e+01	3.61e-01	5.61e-01	4.93e-01	4.75e+00	9.46e+00	9.34e+00	8.89e-03	2.40e-01	2.22e-01
chr17	28558210	28560766	ENSMUSG00000024225	0.5264	-	Clps	protein_coding	9.70e-06	1.81e-03	2.018581	6.44e+00	6.58e-02	8.50e+00	2.69e-01	6.83e+00	6.61e+00	5.86e+00	8.35e-02	7.17e-02	4.21e-02	8.69e+00	8.55e+00	8.26e+00	3.05e-01	2.76e-01	2.25e-01
chr14	59201209	59237265	ENSMUSG00000035469	0.4247	+	Rcbtb1	protein_coding	1.16e-05	2.13e-03	-1.802994	1.03e+01	8.51e-02	8.17e+00	2.43e-02	1.04e+01	1.07e+01	9.85e+00	8.59e-02	1.10e-01	5.93e-02	6.55e+00	9.33e+00	8.63e+00	5.99e-03	4.15e-02	2.55e-02
chr13	66874081	66874659	ENSMUSG00000095847	0.4819	+	Gm5451	processed_pseudogene	1.18e-05	2.15e-03	-2.943416	5.14e+00	1.06e-01	4.08e+00	1.30e-02	3.17e+00	3.70e+00	8.56e+00	6.38e-03	9.57e-03	3.01e-01	3.58e+00	4.32e+00	4.32e+00	8.77e-03	1.52e-02	1.52e-02
chr9	108936633	108949623	ENSMUSG00000025651	0.4876	+	Uqcrc1	protein_coding	1.25e-05	2.26e-03	1.729876	1.01e+01	2.01e-01	1.19e+01	6.68e-01	1.02e+01	1.04e+01	9.72e+00	2.15e-01	2.37e-01	1.52e-01	1.20e+01	1.18e+01	1.17e+01	7.36e-01	6.54e-01	6.14e-01
chr13	91796533	91807705	ENSMUSG00000021621	0.4352	-	Zcchc9	protein_coding	1.40e-05	2.48e-03	-1.980241	9.41e+00	1.60e-01	6.35e+00	4.05e-02	9.31e+00	9.89e+00	9.03e+00	1.45e-01	2.17e-01	1.19e-01	3.46e+00	8.63e+00	6.97e+00	2.29e-03	9.07e-02	2.84e-02
chr6	71683298	71683885	ENSMUSG00000108813	0.5187	+	Rpl19-ps9	processed_pseudogene	1.41e-05	2.48e-03	-3.754888	3.04e+00	4.94e-02	1.72e+00	2.92e-03	0.00e+00	1.58e+00	7.53e+00	0.00e+00	1.59e-03	1.47e-01	2.00e+00	0.00e+00	3.17e+00	2.39e-03	0.00e+00	6.38e-03
chr10	80583654	80590341	ENSMUSG00000003346	0.5779	-	Abhd17a	protein_coding	1.43e-05	2.49e-03	1.821253	7.33e+00	5.39e-02	9.13e+00	1.91e-01	7.28e+00	7.61e+00	7.10e+00	5.15e-02	6.48e-02	4.54e-02	8.82e+00	9.58e+00	8.98e+00	1.51e-01	2.55e-01	1.69e-01
chr8	5083219	5105351	ENSMUSG00000023073	0.3631	-	Slc10a2	protein_coding	1.67e-05	2.88e-03	-1.614004	8.66e+00	1.12e-01	7.11e+00	3.63e-02	9.06e+00	7.48e+00	9.44e+00	1.27e-01	4.25e-02	1.65e-01	6.13e+00	7.50e+00	7.70e+00	1.65e-02	4.29e-02	4.94e-02
chr7	103812524	103813996	ENSMUSG00000073940	0.4569	-	Hbb-bt	protein_coding	1.72e-05	2.94e-03	2.647698	3.86e+00	1.01e-02	6.44e+00	6.71e-02	4.09e+00	4.17e+00	3.32e+00	1.15e-02	1.23e-02	6.49e-03	7.18e+00	6.38e+00	5.75e+00	1.04e-01	5.92e-02	3.82e-02
chr7	29256323	29281912	ENSMUSG00000074227	0.4793	-	Spint2	protein_coding	1.75e-05	2.94e-03	-1.447122	1.08e+01	2.49e-01	8.73e+00	9.13e-02	1.08e+01	1.07e+01	1.10e+01	2.48e-01	2.27e-01	2.73e-01	6.38e+00	9.80e+00	1.00e+01	1.12e-02	1.22e-01	1.40e-01
chr19	5490455	5495201	ENSMUSG00000056201	0.5264	+	Cfl1	protein_coding	1.76e-05	2.94e-03	-1.758851	1.05e+01	5.33e-01	8.86e+00	1.57e-01	1.04e+01	1.00e+01	1.12e+01	4.67e-01	3.45e-01	7.87e-01	8.84e+00	8.77e+00	8.98e+00	1.54e-01	1.47e-01	1.70e-01
chr17	23675447	23677449	ENSMUSG00000023905	0.5746	-	Tnfrsf12a	protein_coding	1.86e-05	3.08e-03	-2.438830	5.82e+00	1.09e-01	5.01e+00	1.97e-02	4.09e+00	4.25e+00	9.12e+00	8.90e-03	1.00e-02	3.08e-01	5.58e+00	3.91e+00	5.52e+00	2.61e-02	7.79e-03	2.50e-02
chr8	91798525	91802067	ENSMUSG00000031734	0.6091	-	Irx3	protein_coding	1.88e-05	3.09e-03	-3.633130	4.78e+00	6.70e-02	2.47e+00	4.85e-03	2.32e+00	3.70e+00	8.31e+00	2.42e-03	7.27e-03	1.91e-01	3.70e+00	3.70e+00	0.00e+00	7.27e-03	7.27e-03	0.00e+00
chr7	72648757	72649311	ENSMUSG00000081895	0.4757	-	Rpl17-ps10	processed_pseudogene	2.00e-05	3.25e-03	-1.847211	8.87e+00	3.89e-01	6.33e+00	1.08e-01	8.27e+00	9.01e+00	9.33e+00	2.46e-01	4.11e-01	5.11e-01	4.09e+00	8.15e+00	6.74e+00	1.28e-02	2.26e-01	8.45e-02
chr4	155761178	155769264	ENSMUSG00000054514	0.4580	+	Atad3aos	antisense	2.13e-05	3.42e-03	-3.993545	4.29e+00	1.94e-02	1.77e+00	9.72e-04	2.00e+00	3.17e+00	7.71e+00	7.95e-04	2.12e-03	5.54e-02	2.32e+00	3.00e+00	0.00e+00	1.06e-03	1.86e-03	0.00e+00
chr10	101681487	102391469	ENSMUSG00000019888	0.3596	+	Mgat4c	protein_coding	2.15e-05	3.42e-03	-1.914856	1.15e+01	2.65e-01	9.57e+00	7.02e-02	1.17e+01	1.10e+01	1.17e+01	3.13e-01	1.87e-01	2.96e-01	9.92e+00	9.45e+00	9.34e+00	8.82e-02	6.36e-02	5.89e-02
chr11	70663771	70669416	ENSMUSG00000018287	0.5048	-	Spag7	protein_coding	2.30e-05	3.62e-03	-1.818302	1.10e+01	1.05e+00	9.12e+00	2.98e-01	1.09e+01	1.10e+01	1.10e+01	1.02e+00	1.08e+00	1.06e+00	9.38e+00	8.79e+00	9.17e+00	3.53e-01	2.35e-01	3.07e-01
chr4	129461581	129488498	ENSMUSG00000040859	0.4788	+	Bsdc1	protein_coding	2.49e-05	3.89e-03	-1.469993	9.09e+00	6.49e-02	7.08e+00	2.34e-02	8.33e+00	9.48e+00	9.47e+00	3.57e-02	7.98e-02	7.92e-02	4.75e+00	8.14e+00	8.33e+00	2.90e-03	3.15e-02	3.57e-02
chr8	21593375	21594508	ENSMUSG00000079113	0.4250	-	Gm7861	protein_coding	2.58e-05	3.97e-03	1.818386	1.23e+01	3.79e+00	1.41e+01	1.34e+01	1.27e+01	1.22e+01	1.20e+01	4.86e+00	3.56e+00	2.94e+00	1.46e+01	1.40e+01	1.37e+01	1.82e+01	1.21e+01	9.79e+00
chr7	46740497	46742980	ENSMUSG00000074115	0.5382	-	Saa1	protein_coding	2.59e-05	3.97e-03	-1.822871	1.17e+01	2.92e+00	1.02e+01	8.25e-01	1.12e+01	1.09e+01	1.30e+01	1.66e+00	1.34e+00	5.75e+00	1.07e+01	9.52e+00	1.03e+01	1.13e+00	5.03e-01	8.38e-01
chr9	87144306	87184045	ENSMUSG00000042761	0.4564	+	Mrap2	protein_coding	2.97e-05	4.52e-03	-2.604862	7.34e+00	6.86e-02	4.77e+00	1.09e-02	7.26e+00	7.92e+00	6.85e+00	6.16e-02	9.81e-02	4.62e-02	4.91e+00	5.09e+00	4.32e+00	1.18e-02	1.34e-02	7.70e-03
chr3	103020426	103058186	ENSMUSG00000068823	0.3861	+	Csde1	protein_coding	3.09e-05	4.66e-03	-1.781159	1.20e+01	3.76e-01	1.09e+01	1.10e-01	1.08e+01	1.11e+01	1.39e+01	1.03e-01	1.27e-01	8.99e-01	1.11e+01	1.07e+01	1.09e+01	1.21e-01	9.70e-02	1.10e-01
chr13	29906575	29985668	ENSMUSG00000016477	0.4567	-	E2f3	protein_coding	3.26e-05	4.86e-03	-1.748461	8.32e+00	5.74e-02	6.42e+00	1.70e-02	7.79e+00	8.27e+00	8.90e+00	3.79e-02	5.28e-02	8.16e-02	5.21e+00	7.18e+00	6.88e+00	6.17e-03	2.47e-02	2.00e-02
chr5	12669155	12670728	ENSMUSG00000105237	0.5210	-	Gm42580	processed_pseudogene	3.58e-05	5.27e-03	-4.507795	3.26e+00	4.76e-02	8.62e-01	1.33e-03	0.00e+00	2.32e+00	7.46e+00	0.00e+00	3.19e-03	1.40e-01	2.58e+00	0.00e+00	0.00e+00	3.99e-03	0.00e+00	0.00e+00
chr13	3882565	3918220	ENSMUSG00000021215	0.4345	-	Net1	protein_coding	3.60e-05	5.27e-03	-1.603949	1.01e+01	3.97e-01	8.26e+00	1.30e-01	1.01e+01	1.04e+01	9.75e+00	3.89e-01	4.91e-01	3.11e-01	6.98e+00	9.01e+00	8.79e+00	4.53e-02	1.86e-01	1.60e-01
chr3	61002795	61008982	ENSMUSG00000027765	0.4195	+	P2ry1	protein_coding	3.64e-05	5.29e-03	-2.031560	9.70e+00	1.91e-01	7.65e+00	4.65e-02	9.55e+00	1.02e+01	9.33e+00	1.65e-01	2.64e-01	1.42e-01	8.03e+00	7.95e+00	6.97e+00	5.75e-02	5.44e-02	2.74e-02
chr8	105297663	105305370	ENSMUSG00000014859	0.5016	+	E2f4	protein_coding	3.72e-05	5.35e-03	-2.635317	6.91e+00	3.93e-02	4.16e+00	6.06e-03	6.78e+00	6.44e+00	7.51e+00	3.42e-02	2.70e-02	5.67e-02	5.00e+00	4.32e+00	3.17e+00	9.72e-03	5.96e-03	2.51e-03
chr9	78109192	78172107	ENSMUSG00000009828	0.4496	+	Ick	protein_coding	3.88e-05	5.54e-03	-1.674034	1.00e+01	7.96e-02	8.25e+00	2.49e-02	9.98e+00	1.04e+01	9.65e+00	7.67e-02	1.01e-01	6.11e-02	7.45e+00	8.78e+00	8.53e+00	1.33e-02	3.34e-02	2.81e-02
chr13	24597613	24604925	ENSMUSG00000085603	0.4573	-	Gm11346	transcribed_processed_pseudogene	4.18e-05	5.91e-03	4.039528	1.30e+00	5.18e-04	4.05e+00	1.25e-02	2.32e+00	0.00e+00	1.58e+00	1.04e-03	0.00e+00	5.18e-04	5.46e+00	0.00e+00	6.69e+00	1.11e-02	0.00e+00	2.64e-02
chr1	171518122	171535294	ENSMUSG00000038209	0.4250	-	Itln1	protein_coding	4.26e-05	5.97e-03	1.825117	1.24e+01	2.07e+00	1.42e+01	7.33e+00	1.25e+01	1.27e+01	1.19e+01	2.20e+00	2.57e+00	1.44e+00	1.46e+01	1.40e+01	1.40e+01	9.38e+00	6.35e+00	6.26e+00
chr9	69450235	69451035	ENSMUSG00000062874	0.5406	-	Gm4978	processed_pseudogene	4.32e-05	6.00e-03	-4.063010	3.87e+00	6.14e-02	1.49e+00	2.92e-03	1.00e+00	2.81e+00	7.81e+00	7.97e-04	4.78e-03	1.79e-01	3.46e+00	1.00e+00	0.00e+00	7.97e-03	7.97e-04	0.00e+00
chr2	170496428	170519123	ENSMUSG00000052033	0.4856	+	Pfdn4	protein_coding	4.39e-05	6.01e-03	-2.401655	6.72e+00	5.27e-02	4.78e+00	9.70e-03	5.91e+00	5.81e+00	8.45e+00	2.02e-02	1.88e-02	1.19e-01	4.17e+00	5.43e+00	4.75e+00	5.82e-03	1.44e-02	8.90e-03
chr15	82790107	82794245	ENSMUSG00000022445	0.5197	-	Cyp2d26	protein_coding	4.40e-05	6.01e-03	1.803114	6.25e+00	7.28e-02	8.39e+00	2.56e-01	6.41e+00	7.48e+00	4.86e+00	6.34e-02	1.34e-01	2.11e-02	8.18e+00	8.68e+00	8.31e+00	2.18e-01	3.10e-01	2.39e-01
chr3	34183307	34184192	ENSMUSG00000105739	0.4458	+	Gm5708	processed_pseudogene	4.54e-05	6.15e-03	-3.800900	3.91e+00	5.85e-02	2.16e+00	3.46e-03	1.00e+00	3.00e+00	7.73e+00	7.97e-04	5.58e-03	1.69e-01	3.17e+00	1.00e+00	2.32e+00	6.38e-03	7.97e-04	3.19e-03
chr1	9941959	9944118	ENSMUSG00000098234	0.4440	-	Snhg6	lincRNA	4.92e-05	6.61e-03	-1.437649	8.94e+00	3.73e-01	7.03e+00	1.37e-01	8.82e+00	9.03e+00	8.98e+00	3.41e-01	3.96e-01	3.81e-01	5.09e+00	7.92e+00	8.07e+00	2.50e-02	1.83e-01	2.03e-01
chr2	155276297	155278073	ENSMUSG00000027602	0.6562	+	Map1lc3a	protein_coding	5.23e-05	6.97e-03	1.603087	8.03e+00	1.55e-01	9.63e+00	4.73e-01	7.81e+00	7.95e+00	8.31e+00	1.33e-01	1.46e-01	1.88e-01	9.81e+00	9.72e+00	9.38e+00	5.31e-01	4.97e-01	3.92e-01
chr12	111669355	111672338	ENSMUSG00000001270	0.6186	-	Ckb	protein_coding	5.35e-05	7.08e-03	1.569474	9.44e+00	5.62e-01	1.12e+01	1.67e+00	8.76e+00	1.06e+01	9.00e+00	2.95e-01	1.04e+00	3.50e-01	1.08e+01	1.17e+01	1.12e+01	1.22e+00	2.23e+00	1.55e+00
chr14	65837302	65866604	ENSMUSG00000022035	0.4480	+	Ccdc25	protein_coding	5.43e-05	7.10e-03	-1.920388	1.04e+01	5.00e-01	8.30e+00	1.32e-01	1.05e+01	1.04e+01	1.03e+01	5.39e-01	5.03e-01	4.59e-01	9.27e+00	7.64e+00	7.99e+00	2.29e-01	7.34e-02	9.37e-02
chr1	172481788	172498878	ENSMUSG00000037995	0.5459	+	Igsf9	protein_coding	5.47e-05	7.10e-03	-1.821017	1.28e+01	4.48e-01	1.10e+01	1.27e-01	1.28e+01	1.33e+01	1.23e+01	4.25e-01	6.10e-01	3.09e-01	1.12e+01	1.05e+01	1.12e+01	1.50e-01	8.93e-02	1.41e-01
chr3	103832601	103854618	ENSMUSG00000044165	0.4261	+	Bcl2l15	protein_coding	5.50e-05	7.10e-03	-1.748222	1.03e+01	3.26e-01	8.57e+00	9.67e-02	1.04e+01	1.02e+01	1.04e+01	3.42e-01	2.99e-01	3.35e-01	8.84e+00	8.32e+00	8.53e+00	1.16e-01	8.08e-02	9.34e-02
chr3	131288441	131303227	ENSMUSG00000027983	0.4830	-	Cyp2u1	protein_coding	5.58e-05	7.16e-03	-1.791842	9.74e+00	1.31e-01	7.91e+00	3.77e-02	9.75e+00	9.94e+00	9.55e+00	1.31e-01	1.49e-01	1.13e-01	8.36e+00	7.40e+00	7.97e+00	4.98e-02	2.55e-02	3.78e-02
chr1	85793441	85851576	ENSMUSG00000036707	0.4152	+	Cab39	protein_coding	5.70e-05	7.26e-03	-1.568057	1.03e+01	1.69e-01	8.68e+00	5.68e-02	1.02e+01	1.05e+01	1.01e+01	1.65e-01	1.92e-01	1.50e-01	8.40e+00	8.58e+00	9.08e+00	4.56e-02	5.17e-02	7.31e-02
chr19	11375523	11392790	ENSMUSG00000101389	0.3817	+	Ms4a4a	protein_coding	5.94e-05	7.50e-03	-1.881258	9.01e+00	4.14e-01	7.12e+00	1.12e-01	9.24e+00	8.73e+00	9.06e+00	4.81e-01	3.37e-01	4.25e-01	7.47e+00	6.97e+00	6.93e+00	1.40e-01	9.89e-02	9.65e-02
chr7	101317086	101346626	ENSMUSG00000030688	0.5159	+	Stard10	protein_coding	6.28e-05	7.82e-03	1.530118	8.12e+00	4.14e-02	9.63e+00	1.20e-01	8.38e+00	7.98e+00	7.99e+00	4.93e-02	3.72e-02	3.77e-02	9.94e+00	9.73e+00	9.20e+00	1.46e-01	1.26e-01	8.72e-02
chr9	57589452	57596233	ENSMUSG00000032308	0.5470	+	Ulk3	protein_coding	6.29e-05	7.82e-03	-1.833446	1.02e+01	1.08e-01	8.36e+00	3.02e-02	9.90e+00	1.05e+01	1.02e+01	8.66e-02	1.33e-01	1.05e-01	8.65e+00	8.39e+00	8.05e+00	3.63e-02	3.04e-02	2.40e-02
chr15	83153494	83172592	ENSMUSG00000018042	0.5517	-	Cyb5r3	protein_coding	6.93e-05	8.54e-03	1.596983	9.55e+00	1.33e-01	1.13e+01	4.01e-01	9.31e+00	1.05e+01	8.88e+00	1.00e-01	2.23e-01	7.46e-02	1.12e+01	1.13e+01	1.14e+01	3.70e-01	4.02e-01	4.32e-01
chr7	80227147	80232813	ENSMUSG00000030538	0.5137	-	Cib1	protein_coding	7.14e-05	8.74e-03	1.586951	9.78e+00	1.27e-01	1.14e+01	3.83e-01	1.00e+01	9.79e+00	9.52e+00	1.49e-01	1.27e-01	1.06e-01	1.15e+01	1.12e+01	1.13e+01	4.28e-01	3.45e-01	3.75e-01
chr8	4325210	4360020	ENSMUSG00000023235	0.4484	+	Ccl25	protein_coding	7.27e-05	8.78e-03	-1.963128	1.24e+01	4.08e-01	1.04e+01	1.05e-01	1.20e+01	1.27e+01	1.25e+01	3.03e-01	4.84e-01	4.38e-01	1.09e+01	1.03e+01	1.01e+01	1.39e-01	9.25e-02	8.24e-02
chr11	32283511	32284465	ENSMUSG00000069919	0.5717	+	Hba-a1	protein_coding	7.28e-05	8.78e-03	2.005999	5.28e+00	2.94e-02	7.22e+00	1.20e-01	5.73e+00	5.17e+00	4.95e+00	3.92e-02	2.64e-02	2.26e-02	7.91e+00	7.23e+00	6.51e+00	1.81e-01	1.12e-01	6.78e-02
chr7	92734166	92741468	ENSMUSG00000074024	0.3837	-	4632427E13Rik	bidirectional_promoter_lncRNA	7.66e-05	9.10e-03	2.791413	3.68e+00	3.17e-03	6.48e+00	2.35e-02	3.58e+00	4.00e+00	3.46e+00	2.91e-03	3.97e-03	2.64e-03	6.61e+00	6.19e+00	6.63e+00	2.56e-02	1.90e-02	2.59e-02
chr3	98222156	98236748	ENSMUSG00000027876	0.4523	+	Reg4	protein_coding	7.66e-05	9.10e-03	1.671861	7.09e+00	9.12e-02	8.90e+00	2.92e-01	6.64e+00	7.97e+00	6.66e+00	6.05e-02	1.52e-01	6.11e-02	8.99e+00	8.90e+00	8.81e+00	3.10e-01	2.92e-01	2.74e-01
chr7	143513579	143549106	ENSMUSG00000059119	0.4462	-	Nap1l4	protein_coding	7.71e-05	9.10e-03	-1.699831	9.79e+00	1.64e-01	8.91e+00	5.05e-02	8.43e+00	9.01e+00	1.19e+01	3.58e-02	5.35e-02	4.04e-01	9.20e+00	8.92e+00	8.59e+00	6.12e-02	5.05e-02	4.00e-02
chr15	103562762	103565078	ENSMUSG00000022491	0.4368	-	Glycam1	protein_coding	7.77e-05	9.11e-03	2.925999	2.30e+00	2.91e-03	5.01e+00	2.69e-02	2.00e+00	2.32e+00	2.58e+00	2.18e-03	2.91e-03	3.63e-03	4.17e+00	6.11e+00	4.75e+00	1.24e-02	4.94e-02	1.89e-02
chr5	99955935	99978938	ENSMUSG00000000568	0.3855	-	Hnrnpd	protein_coding	8.13e-05	9.45e-03	-1.650602	9.30e+00	4.51e-02	7.69e+00	1.43e-02	8.89e+00	9.20e+00	9.80e+00	3.28e-02	4.07e-02	6.19e-02	7.50e+00	7.77e+00	7.80e+00	1.25e-02	1.51e-02	1.54e-02

Download the DEG result list for TnfR1_vs_ColVICreLtbR.
Download the whole result list for TnfR1_vs_ColVICreLtbR.

DEG table for the contrast TnfR1_vs_ColVICreTnfR1

The following table presents the top 10% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast TnfR1_vs_ColVICreTnfR1. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right.

chromosome	start	end	gene_id	gc_content	strand	gene_name	biotype	p-value_deseq	FDR_deseq	log2_normalized_fold_change_TnfR1_vs_ColVICreTnfR1	log2_normalized_mean_counts_TnfR1	rpgm_normalized_mean_counts_TnfR1	log2_normalized_mean_counts_ColVICreTnfR1	rpgm_normalized_mean_counts_ColVICreTnfR1	log2_normalized_counts_GK3R155-TnfR1-D4	log2_normalized_counts_GK3R156-TnfR1-D5	log2_normalized_counts_GK3R157-TnfR1-D6	rpgm_normalized_counts_GK3R155-TnfR1-D4	rpgm_normalized_counts_GK3R156-TnfR1-D5	rpgm_normalized_counts_GK3R157-TnfR1-D6	log2_normalized_counts_GK3R158-ColVICreTnfR1-T7	log2_normalized_counts_GK3R159-ColVICreTnfR1-T8	log2_normalized_counts_GK3R160-ColVICreTnfR1-T9	rpgm_normalized_counts_GK3R158-ColVICreTnfR1-T7	rpgm_normalized_counts_GK3R159-ColVICreTnfR1-T8	rpgm_normalized_counts_GK3R160-ColVICreTnfR1-T9
chr3	95410346	95411207	ENSMUSG00000096177	0.5580	-	Gm5070	processed_pseudogene	3.44e-47	5.65e-43	-8.686000	6.23e+00	7.66e-01	1.19e+00	1.06e-03	2.00e+00	5.21e+00	1.15e+01	2.39e-03	2.87e-02	2.27e+00	1.00e+00	1.00e+00	1.58e+00	7.97e-04	7.97e-04	1.59e-03
chr2	143150830	143151630	ENSMUSG00000083047	0.4906	-	Gm14082	processed_pseudogene	2.15e-38	1.76e-34	-8.187352	6.23e+00	4.64e-01	8.62e-01	7.97e-04	3.00e+00	4.95e+00	1.07e+01	5.58e-03	2.39e-02	1.36e+00	1.00e+00	0.00e+00	1.58e+00	7.97e-04	0.00e+00	1.59e-03
chr11	31357307	31370074	ENSMUSG00000020303	0.4995	-	Stc2	protein_coding	1.87e-33	1.02e-29	-6.128070	5.93e+00	5.99e-02	2.39e+00	7.07e-04	3.91e+00	3.70e+00	1.02e+01	2.12e-03	1.82e-03	1.76e-01	3.00e+00	1.58e+00	2.58e+00	1.06e-03	3.03e-04	7.57e-04
chr9	108358202	108359069	ENSMUSG00000104280	0.5703	-	Rps2-ps11	processed_pseudogene	8.86e-33	3.63e-29	-7.763766	5.55e+00	3.46e-01	1.00e+00	7.97e-04	1.58e+00	4.75e+00	1.03e+01	1.59e-03	2.07e-02	1.02e+00	1.00e+00	1.00e+00	1.00e+00	7.97e-04	7.97e-04	7.97e-04
chr9	55148854	55207529	ENSMUSG00000032307	0.4028	+	Ube2q2	protein_coding	9.97e-32	3.27e-28	-5.900224	6.49e+00	3.35e-01	3.88e+00	5.25e-03	4.46e+00	3.58e+00	1.14e+01	7.52e-03	3.94e-03	9.93e-01	3.46e+00	3.58e+00	4.58e+00	3.58e-03	3.94e-03	8.24e-03
chr13	8940336	8940977	ENSMUSG00000061988	0.5171	-	Rpl10a-ps2	processed_pseudogene	4.77e-30	1.30e-26	-6.815917	5.79e+00	3.59e-01	1.39e+00	2.39e-03	3.00e+00	4.00e+00	1.04e+01	5.58e-03	1.20e-02	1.06e+00	0.00e+00	1.00e+00	3.17e+00	0.00e+00	7.97e-04	6.38e-03
chr11	100228845	100232078	ENSMUSG00000084257	0.4858	-	Gm11597	unprocessed_pseudogene	1.52e-28	3.56e-25	-8.132714	4.10e+00	2.23e-01	0.00e+00	0.00e+00	0.00e+00	2.58e+00	9.71e+00	0.00e+00	3.99e-03	6.65e-01	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr6	79048116	79048824	ENSMUSG00000107772	0.4993	+	Gm5311	processed_pseudogene	3.17e-28	6.51e-25	-7.415037	4.27e+00	2.71e-01	8.62e-01	7.97e-04	0.00e+00	2.81e+00	9.99e+00	0.00e+00	4.78e-03	8.09e-01	0.00e+00	1.00e+00	1.58e+00	0.00e+00	7.97e-04	1.59e-03
chr3	152153447	152154116	ENSMUSG00000084343	0.5194	+	Gm16198	processed_pseudogene	2.34e-25	4.27e-22	-7.592457	5.05e+00	2.04e-01	3.33e-01	2.66e-04	2.00e+00	3.58e+00	9.56e+00	2.39e-03	8.77e-03	6.02e-01	0.00e+00	1.00e+00	0.00e+00	0.00e+00	7.97e-04	0.00e+00
chrX	103460375	103483217	ENSMUSG00000086503	0.4122	-	Xist	lincRNA	1.09e-23	1.79e-20	-6.811642	6.80e+00	4.22e-02	0.00e+00	0.00e+00	6.52e+00	6.95e+00	6.92e+00	3.45e-02	4.66e-02	4.55e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr2	144142488	144143373	ENSMUSG00000082480	0.5756	-	Gm11687	processed_pseudogene	7.34e-23	1.09e-19	-6.872125	5.26e+00	2.17e-01	1.19e+00	1.06e-03	3.32e+00	2.81e+00	9.65e+00	7.18e-03	4.78e-03	6.40e-01	1.00e+00	1.58e+00	1.00e+00	7.97e-04	1.59e-03	7.97e-04
chr12	113325240	113330523	ENSMUSG00000076614	0.5068	-	Ighg1	IG_C_gene	1.84e-21	2.51e-18	5.609580	2.82e+00	1.70e-03	8.34e+00	9.55e-02	3.00e+00	2.00e+00	3.46e+00	1.79e-03	7.67e-04	2.56e-03	8.97e+00	7.15e+00	8.90e+00	1.28e-01	3.61e-02	1.22e-01
chr13	67810246	67811200	ENSMUSG00000097906	0.5560	+	Gm9625	processed_pseudogene	2.92e-21	3.69e-18	-4.001078	9.63e+00	2.85e+00	7.80e+00	1.77e-01	7.97e+00	7.58e+00	1.33e+01	1.99e-01	1.52e-01	8.19e+00	7.85e+00	7.74e+00	7.81e+00	1.83e-01	1.70e-01	1.78e-01
chr13	41182495	41220405	ENSMUSG00000021364	0.4502	-	Elovl2	protein_coding	3.88e-21	4.54e-18	-7.189825	4.45e+00	4.78e-02	3.33e-01	8.22e-05	2.58e+00	1.58e+00	9.17e+00	1.23e-03	4.93e-04	1.42e-01	1.00e+00	0.00e+00	0.00e+00	2.47e-04	0.00e+00	0.00e+00
chr5	73476447	73477353	ENSMUSG00000082039	0.5413	-	Gm15653	processed_pseudogene	1.18e-19	1.29e-16	-6.653442	4.84e+00	1.60e-01	6.67e-01	7.97e-04	2.00e+00	3.32e+00	9.20e+00	2.39e-03	7.18e-03	4.70e-01	0.00e+00	0.00e+00	2.00e+00	0.00e+00	0.00e+00	2.39e-03
chrX	90744546	90745062	ENSMUSG00000084289	0.4565	-	Gm6977	processed_pseudogene	8.72e-19	8.94e-16	-3.651578	9.90e+00	2.41e+00	7.86e+00	1.91e-01	7.89e+00	8.75e+00	1.30e+01	1.89e-01	3.43e-01	6.71e+00	7.35e+00	7.92e+00	8.31e+00	1.29e-01	1.92e-01	2.53e-01
chr15	79823896	79834688	ENSMUSG00000089715	0.5498	-	Cbx6	protein_coding	1.28e-18	1.24e-15	-3.624269	9.07e+00	2.51e-01	7.42e+00	2.02e-02	7.29e+00	7.31e+00	1.26e+01	1.79e-02	1.83e-02	7.17e-01	7.71e+00	6.95e+00	7.60e+00	2.42e-02	1.42e-02	2.23e-02
chr6	72355447	72359762	ENSMUSG00000055912	0.5582	+	Tmem150a	protein_coding	5.63e-18	5.13e-15	-4.975197	5.74e+00	9.81e-02	3.45e+00	2.84e-03	3.00e+00	4.25e+00	9.98e+00	1.99e-03	5.12e-03	2.87e-01	3.70e+00	3.32e+00	3.32e+00	3.41e-03	2.56e-03	2.56e-03
chr3	57841895	57848079	ENSMUSG00000027805	0.4666	-	Pfn2	protein_coding	1.47e-17	1.27e-14	-4.413910	7.16e+00	9.81e-02	4.24e+00	4.38e-03	4.39e+00	6.95e+00	1.01e+01	4.61e-03	2.84e-02	2.61e-01	4.91e+00	3.81e+00	4.00e+00	6.69e-03	3.00e-03	3.46e-03
chrY	1010543	1028847	ENSMUSG00000069049	0.3494	+	Eif2s3y	protein_coding	2.49e-17	2.04e-14	7.247928	0.00e+00	0.00e+00	7.23e+00	2.69e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	6.95e+00	7.31e+00	7.43e+00	2.19e-02	2.82e-02	3.06e-02
chr5	95956951	95961068	ENSMUSG00000023078	0.3941	+	Cxcl13	protein_coding	2.67e-17	2.09e-14	3.920966	4.46e+00	1.05e-02	8.40e+00	1.67e-01	4.91e+00	4.00e+00	4.46e+00	1.41e-02	7.30e-03	1.02e-02	8.45e+00	8.70e+00	8.04e+00	1.70e-01	2.03e-01	1.28e-01
chr7	17138871	17139472	ENSMUSG00000108694	0.5150	-	Gm7287	processed_pseudogene	9.47e-17	7.06e-14	-6.055282	4.89e+00	1.41e-01	8.62e-01	1.33e-03	2.32e+00	3.32e+00	9.01e+00	3.19e-03	7.18e-03	4.11e-01	0.00e+00	2.58e+00	0.00e+00	0.00e+00	3.99e-03	0.00e+00
chr7	5127396	5129356	ENSMUSG00000109495	0.5079	-	RP23-419K14.11	processed_pseudogene	1.84e-16	1.31e-13	-3.795090	7.77e+00	4.97e-01	5.49e+00	3.51e-02	6.00e+00	6.57e+00	1.07e+01	5.02e-02	7.50e-02	1.37e+00	5.36e+00	5.55e+00	5.55e+00	3.19e-02	3.67e-02	3.67e-02
chr1	55127297	55128287	ENSMUSG00000089670	0.5590	+	Gm16581	processed_pseudogene	2.05e-15	1.40e-12	-4.620586	5.10e+00	2.28e-01	3.45e+00	8.51e-03	3.00e+00	2.58e+00	9.73e+00	5.58e-03	3.99e-03	6.75e-01	4.17e+00	3.17e+00	3.00e+00	1.36e-02	6.38e-03	5.58e-03
chr15	59210908	59211720	ENSMUSG00000025922	0.4625	+	Gm5045	processed_pseudogene	9.02e-15	5.92e-12	-5.037475	5.17e+00	1.65e-01	2.66e+00	4.25e-03	2.81e+00	3.46e+00	9.24e+00	4.78e-03	7.97e-03	4.82e-01	2.58e+00	2.58e+00	2.81e+00	3.99e-03	3.99e-03	4.78e-03
chr11	43670801	43671484	ENSMUSG00000083662	0.5044	+	Gm12152	processed_pseudogene	9.52e-15	6.01e-12	-6.745954	4.36e+00	8.48e-02	0.00e+00	0.00e+00	2.00e+00	2.81e+00	8.28e+00	2.39e-03	4.78e-03	2.47e-01	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr8	65131033	65132314	ENSMUSG00000109935	0.4836	-	Gm7619	processed_pseudogene	3.74e-14	2.27e-11	-5.969626	3.95e+00	9.91e-02	1.00e+00	7.97e-04	1.00e+00	2.32e+00	8.53e+00	7.97e-04	3.19e-03	2.93e-01	1.00e+00	1.00e+00	1.00e+00	7.97e-04	7.97e-04	7.97e-04
chr2	9857078	9890034	ENSMUSG00000015619	0.4826	-	Gata3	protein_coding	8.26e-14	4.84e-11	-4.115477	6.13e+00	4.20e-02	3.79e+00	2.28e-03	4.25e+00	4.52e+00	9.63e+00	2.74e-03	3.34e-03	1.20e-01	4.32e+00	2.58e+00	4.46e+00	2.89e-03	7.60e-04	3.19e-03
chrX	57736547	57738555	ENSMUSG00000080710	0.4032	-	Gm8107	processed_pseudogene	3.36e-13	1.90e-10	-5.798742	3.98e+00	8.80e-02	8.62e-01	7.97e-04	2.00e+00	1.58e+00	8.35e+00	2.39e-03	1.59e-03	2.60e-01	1.00e+00	0.00e+00	1.58e+00	7.97e-04	0.00e+00	1.59e-03
chr3	97125511	97126113	ENSMUSG00000106324	0.4196	-	Gm43222	processed_pseudogene	4.89e-13	2.68e-10	-6.297681	3.62e+00	6.19e-02	0.00e+00	0.00e+00	2.00e+00	1.00e+00	7.85e+00	2.39e-03	7.97e-04	1.83e-01	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr6	146782469	146783274	ENSMUSG00000107788	0.5633	+	Gm6266	processed_pseudogene	5.17e-13	2.73e-10	-5.294621	4.81e+00	1.24e-01	1.97e+00	2.39e-03	2.58e+00	3.00e+00	8.84e+00	3.99e-03	5.58e-03	3.64e-01	2.00e+00	2.32e+00	1.58e+00	2.39e-03	3.19e-03	1.59e-03
chr1	36548639	36558349	ENSMUSG00000026121	0.5748	-	Sema4c	protein_coding	5.33e-13	2.73e-10	-4.190765	6.26e+00	3.55e-02	3.60e+00	1.81e-03	4.70e+00	4.58e+00	9.49e+00	3.49e-03	3.21e-03	9.99e-02	4.64e+00	3.17e+00	3.00e+00	3.35e-03	1.12e-03	9.76e-04
chr5	66890366	66890876	ENSMUSG00000082420	0.5245	+	Gm6517	processed_pseudogene	8.44e-13	4.20e-10	-5.031849	4.90e+00	1.21e-01	2.04e+00	2.92e-03	3.32e+00	2.58e+00	8.79e+00	7.18e-03	3.99e-03	3.52e-01	1.00e+00	2.32e+00	2.81e+00	7.97e-04	3.19e-03	4.78e-03
chr18	7868832	7973547	ENSMUSG00000024283	0.3823	+	Wac	protein_coding	2.20e-12	1.06e-09	-2.828267	8.85e+00	9.72e-02	7.37e+00	1.36e-02	7.39e+00	7.51e+00	1.16e+01	1.38e-02	1.49e-02	2.63e-01	7.28e+00	7.28e+00	7.56e+00	1.27e-02	1.27e-02	1.55e-02
chr5	148182899	148184377	ENSMUSG00000066554	0.5423	-	Gm10167	processed_pseudogene	4.44e-12	2.08e-09	-3.398549	6.99e+00	3.38e-01	5.29e+00	3.14e-02	4.58e+00	6.17e+00	1.02e+01	1.83e-02	5.66e-02	9.40e-01	4.91e+00	5.78e+00	5.17e+00	2.31e-02	4.31e-02	2.79e-02
chr2	110418170	110419619	ENSMUSG00000083320	0.4497	-	Gm13935	processed_pseudogene	7.22e-12	3.29e-09	-4.616111	5.89e+00	1.36e-01	2.77e+00	4.78e-03	4.25e+00	4.52e+00	8.89e+00	1.44e-02	1.75e-02	3.76e-01	3.17e+00	2.81e+00	2.32e+00	6.38e-03	4.78e-03	3.19e-03
chr6	125460266	125494791	ENSMUSG00000030342	0.5016	-	Cd9	protein_coding	2.66e-11	1.18e-08	-2.621746	9.97e+00	6.93e-01	8.34e+00	1.12e-01	8.89e+00	8.70e+00	1.23e+01	1.63e-01	1.43e-01	1.77e+00	8.57e+00	8.24e+00	8.22e+00	1.30e-01	1.04e-01	1.03e-01
chr8	92357625	92376286	ENSMUSG00000031737	0.5091	+	Irx5	protein_coding	4.15e-11	1.79e-08	-6.037089	2.87e+00	1.84e-02	0.00e+00	0.00e+00	0.00e+00	1.00e+00	7.60e+00	0.00e+00	2.85e-04	5.50e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr2	181147653	181157014	ENSMUSG00000016349	0.5490	-	Eef1a2	protein_coding	4.97e-11	2.09e-08	-6.051662	3.39e+00	4.14e-02	0.00e+00	0.00e+00	0.00e+00	2.58e+00	7.58e+00	0.00e+00	3.16e-03	1.21e-01	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr13	110395044	110400844	ENSMUSG00000021701	0.4613	+	Plk2	protein_coding	7.99e-11	3.28e-08	-5.000000	4.39e+00	5.64e-02	1.64e+00	1.25e-03	3.32e+00	1.58e+00	8.26e+00	4.80e-03	1.07e-03	1.63e-01	1.00e+00	1.58e+00	2.32e+00	5.34e-04	1.07e-03	2.13e-03
chr3	103864706	103866797	ENSMUSG00000105986	0.4039	+	Gm43065	sense_intronic	1.01e-10	4.06e-08	-6.029747	3.72e+00	5.13e-02	0.00e+00	0.00e+00	1.58e+00	2.00e+00	7.56e+00	1.59e-03	2.39e-03	1.50e-01	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr9	69450235	69451035	ENSMUSG00000062874	0.5406	-	Gm4978	processed_pseudogene	1.20e-10	4.70e-08	-5.548437	3.87e+00	6.14e-02	6.67e-01	5.32e-04	1.00e+00	2.81e+00	7.81e+00	7.97e-04	4.78e-03	1.79e-01	0.00e+00	1.00e+00	1.00e+00	0.00e+00	7.97e-04	7.97e-04
chrY	1260771	1286629	ENSMUSG00000069045	0.3678	-	Ddx3y	protein_coding	1.27e-10	4.83e-08	5.426265	1.19e+00	8.89e-05	6.78e+00	6.06e-03	0.00e+00	2.00e+00	1.58e+00	0.00e+00	1.60e-04	1.07e-04	6.29e+00	6.73e+00	7.32e+00	4.11e-03	5.60e-03	8.48e-03
chr10	60181532	60219260	ENSMUSG00000057337	0.5064	-	Chst3	protein_coding	1.79e-10	6.66e-08	2.887525	5.77e+00	1.23e-02	8.93e+00	9.24e-02	5.67e+00	4.70e+00	6.94e+00	9.39e-03	4.69e-03	2.29e-02	8.77e+00	9.21e+00	8.82e+00	8.17e-02	1.11e-01	8.49e-02
chr8	126981593	126982232	ENSMUSG00000110648	0.4719	-	RP23-382B3.1	processed_pseudogene	3.74e-10	1.36e-07	-3.702799	5.87e+00	1.62e-01	3.94e+00	1.17e-02	4.46e+00	4.00e+00	9.16e+00	1.67e-02	1.20e-02	4.57e-01	4.32e+00	3.70e+00	3.81e+00	1.52e-02	9.57e-03	1.04e-02
chr13	31806691	31810643	ENSMUSG00000050295	0.5388	+	Foxc1	protein_coding	4.46e-10	1.58e-07	-5.569856	2.52e+00	2.25e-02	3.33e-01	1.20e-04	0.00e+00	0.00e+00	7.55e+00	0.00e+00	0.00e+00	6.74e-02	0.00e+00	0.00e+00	1.00e+00	0.00e+00	0.00e+00	3.61e-04
chr3	34183307	34184192	ENSMUSG00000105739	0.4458	+	Gm5708	processed_pseudogene	4.52e-10	1.58e-07	-5.478972	3.91e+00	5.85e-02	6.67e-01	5.32e-04	1.00e+00	3.00e+00	7.73e+00	7.97e-04	5.58e-03	1.69e-01	1.00e+00	0.00e+00	1.00e+00	7.97e-04	0.00e+00	7.97e-04
chr6	47045156	47046289	ENSMUSG00000107952	0.4691	+	Gm6352	processed_pseudogene	5.03e-10	1.72e-07	-5.546894	3.60e+00	4.89e-02	3.33e-01	2.66e-04	1.00e+00	2.32e+00	7.49e+00	7.97e-04	3.19e-03	1.43e-01	1.00e+00	0.00e+00	0.00e+00	7.97e-04	0.00e+00	0.00e+00
chr6	127411130	127411733	ENSMUSG00000106883	0.4702	+	Gm43632	processed_pseudogene	6.09e-10	2.00e-07	-4.821339	4.46e+00	8.19e-02	1.72e+00	2.13e-03	3.17e+00	2.00e+00	8.22e+00	6.38e-03	2.39e-03	2.37e-01	2.58e+00	1.00e+00	1.58e+00	3.99e-03	7.97e-04	1.59e-03
chr13	75869537	75943925	ENSMUSG00000021589	0.4098	-	Rhobtb3	protein_coding	6.10e-10	2.00e-07	-4.536053	5.60e+00	1.98e-02	1.97e+00	6.88e-04	4.00e+00	4.52e+00	8.27e+00	2.58e-03	3.79e-03	5.30e-02	3.32e+00	1.58e+00	1.00e+00	1.55e-03	3.44e-04	1.72e-04
chr2	131846395	131847688	ENSMUSG00000083469	0.4660	+	Gm14281	processed_pseudogene	8.46e-10	2.72e-07	-5.824428	2.46e+00	4.44e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	7.39e+00	0.00e+00	0.00e+00	1.33e-01	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr8	107388225	107403206	ENSMUSG00000003849	0.4688	-	Nqo1	protein_coding	1.75e-09	5.52e-07	-2.764222	7.68e+00	2.37e-01	6.00e+00	3.45e-02	6.64e+00	6.25e+00	1.02e+01	5.36e-02	4.06e-02	6.17e-01	5.83e+00	6.30e+00	5.86e+00	3.03e-02	4.22e-02	3.08e-02
chr6	58584523	58695676	ENSMUSG00000029802	0.3979	+	Abcg2	protein_coding	3.08e-09	9.53e-07	2.418265	9.41e+00	5.30e-02	1.05e+01	2.84e-01	1.00e+01	8.98e+00	9.22e+00	7.76e-02	3.74e-02	4.40e-02	1.33e+01	9.58e+00	8.53e+00	7.67e-01	5.67e-02	2.73e-02
chr7	100738052	100738628	ENSMUSG00000109035	0.4506	-	Gm45209	processed_pseudogene	4.10e-09	1.25e-06	-5.700440	3.34e+00	4.07e-02	0.00e+00	0.00e+00	0.00e+00	2.81e+00	7.21e+00	0.00e+00	4.78e-03	1.17e-01	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr5	12669155	12670728	ENSMUSG00000105237	0.5210	-	Gm42580	processed_pseudogene	5.05e-09	1.51e-06	-5.507795	3.26e+00	4.76e-02	3.33e-01	2.66e-04	0.00e+00	2.32e+00	7.46e+00	0.00e+00	3.19e-03	1.40e-01	0.00e+00	0.00e+00	1.00e+00	0.00e+00	0.00e+00	7.97e-04
chr7	16514400	16515138	ENSMUSG00000101135	0.4899	-	Gm17981	processed_pseudogene	5.94e-09	1.74e-06	-5.727920	2.43e+00	4.15e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	7.29e+00	0.00e+00	0.00e+00	1.24e-01	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr1	37026596	37187613	ENSMUSG00000050122	0.4499	+	Vwa3b	protein_coding	6.78e-09	1.95e-06	-4.280771	3.86e+00	4.95e-03	2.25e+00	2.09e-04	1.00e+00	2.32e+00	8.25e+00	4.82e-05	1.93e-04	1.46e-02	3.17e+00	1.58e+00	2.00e+00	3.86e-04	9.65e-05	1.45e-04
chrY	897788	956786	ENSMUSG00000056673	0.3872	+	Kdm5d	protein_coding	1.48e-08	4.17e-06	5.790077	0.00e+00	0.00e+00	5.68e+00	1.54e-03	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	6.36e+00	5.73e+00	4.95e+00	2.30e-03	1.48e-03	8.52e-04
chr7	102549870	102555842	ENSMUSG00000073977	0.4348	+	Olfr549	protein_coding	1.51e-08	4.17e-06	-5.564785	2.90e+00	2.49e-02	0.00e+00	0.00e+00	0.00e+00	1.58e+00	7.11e+00	0.00e+00	1.08e-03	7.37e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr10	4611593	5005614	ENSMUSG00000019768	0.4108	+	Esr1	protein_coding	1.52e-08	4.17e-06	-4.781360	4.42e+00	5.17e-03	1.39e+00	1.19e-04	2.00e+00	3.58e+00	7.67e+00	2.14e-04	7.86e-04	1.45e-02	1.00e+00	1.58e+00	1.58e+00	7.15e-05	1.43e-04	1.43e-04
chr17	23675447	23677449	ENSMUSG00000023905	0.5746	-	Tnfrsf12a	protein_coding	1.59e-08	4.28e-06	-3.119551	5.82e+00	1.09e-01	4.45e+00	1.21e-02	4.09e+00	4.25e+00	9.12e+00	8.90e-03	1.00e-02	3.08e-01	4.64e+00	3.91e+00	4.81e+00	1.33e-02	7.79e-03	1.50e-02
chr16	4594713	4624924	ENSMUSG00000014303	0.5304	+	Glis2	protein_coding	1.70e-08	4.50e-06	-3.931765	5.22e+00	1.71e-02	2.90e+00	9.81e-04	3.32e+00	4.00e+00	8.34e+00	1.32e-03	2.21e-03	4.77e-02	2.58e+00	2.81e+00	3.32e+00	7.36e-04	8.83e-04	1.32e-03
chr3	124588512	124589157	ENSMUSG00000106009	0.4659	-	Gm9379	processed_pseudogene	1.74e-08	4.54e-06	-5.564785	2.38e+00	3.69e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	7.13e+00	0.00e+00	0.00e+00	1.11e-01	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr18	23415415	23659714	ENSMUSG00000024302	0.4038	+	Dtna	protein_coding	2.29e-08	5.86e-06	-2.745645	7.71e+00	3.37e-02	5.24e+00	4.91e-03	6.52e+00	7.70e+00	8.90e+00	1.19e-02	2.70e-02	6.21e-02	5.49e+00	4.75e+00	5.46e+00	5.73e-03	3.39e-03	5.60e-03
chr9	59145677	59146210	ENSMUSG00000066592	0.5300	-	Gm7589	processed_pseudogene	2.37e-08	5.99e-06	-3.756729	4.91e+00	1.03e-01	3.25e+00	6.91e-03	3.00e+00	3.17e+00	8.55e+00	5.58e-03	6.38e-03	2.98e-01	3.00e+00	3.58e+00	3.17e+00	5.58e-03	8.77e-03	6.38e-03
chr3	66562805	66563551	ENSMUSG00000103600	0.4270	-	Gm17952	processed_pseudogene	4.13e-08	1.02e-05	-4.651052	3.97e+00	5.26e-02	8.62e-01	1.33e-03	2.00e+00	2.32e+00	7.58e+00	2.39e-03	3.19e-03	1.52e-01	0.00e+00	0.00e+00	2.58e+00	0.00e+00	0.00e+00	3.99e-03
chr11	85353167	85826058	ENSMUSG00000059439	0.4320	+	Bcas3	protein_coding	4.15e-08	1.02e-05	-2.765917	6.64e+00	2.60e-02	5.21e+00	3.73e-03	4.95e+00	5.55e+00	9.40e+00	3.11e-03	4.77e-03	7.00e-02	5.21e+00	5.29e+00	5.13e+00	3.73e-03	3.94e-03	3.52e-03
chr8	91798525	91802067	ENSMUSG00000031734	0.6091	-	Irx3	protein_coding	4.63e-08	1.12e-05	-3.928586	4.78e+00	6.70e-02	2.67e+00	3.84e-03	2.32e+00	3.70e+00	8.31e+00	2.42e-03	7.27e-03	1.91e-01	3.70e+00	2.32e+00	2.00e+00	7.27e-03	2.42e-03	1.82e-03
chr11	46243571	46244194	ENSMUSG00000081078	0.4744	-	Gm12568	processed_pseudogene	5.38e-08	1.28e-05	-4.874469	3.57e+00	4.60e-02	8.62e-01	7.97e-04	1.00e+00	2.32e+00	7.40e+00	7.97e-04	3.19e-03	1.34e-01	1.00e+00	0.00e+00	1.58e+00	7.97e-04	0.00e+00	1.59e-03
chr1	195136811	195176716	ENSMUSG00000026616	0.3693	-	Cr2	protein_coding	8.21e-08	1.92e-05	2.344343	6.40e+00	8.72e-03	8.89e+00	4.47e-02	6.81e+00	5.39e+00	6.99e+00	1.05e-02	3.86e-03	1.19e-02	8.72e+00	8.93e+00	9.02e+00	3.95e-02	4.58e-02	4.88e-02
chr5	72626858	72628028	ENSMUSG00000105124	0.4851	-	Gm5297	transcribed_processed_pseudogene	9.70e-08	2.24e-05	-3.620586	5.35e+00	6.46e-02	2.67e+00	4.52e-03	4.52e+00	3.81e+00	7.71e+00	1.75e-02	1.04e-02	1.66e-01	3.00e+00	2.00e+00	3.00e+00	5.58e-03	2.39e-03	5.58e-03
chr17	72918305	72941942	ENSMUSG00000024063	0.4696	+	Lbh	protein_coding	1.59e-07	3.63e-05	2.077407	8.78e+00	8.87e-02	1.07e+01	3.75e-01	9.15e+00	8.59e+00	8.58e+00	1.13e-01	7.67e-02	7.63e-02	1.17e+01	1.05e+01	9.83e+00	6.65e-01	2.79e-01	1.81e-01
chr11	114851152	114872617	ENSMUSG00000051043	0.5022	+	Gprc5c	protein_coding	1.64e-07	3.68e-05	-5.070389	4.18e+00	6.03e-03	5.28e-01	7.31e-05	1.58e+00	3.70e+00	7.25e+00	2.19e-04	1.32e-03	1.65e-02	0.00e+00	1.58e+00	0.00e+00	0.00e+00	2.19e-04	0.00e+00
chr6	71683298	71683885	ENSMUSG00000108813	0.5187	+	Rpl19-ps9	processed_pseudogene	1.75e-07	3.87e-05	-4.392317	3.04e+00	4.94e-02	1.19e+00	1.59e-03	0.00e+00	1.58e+00	7.53e+00	0.00e+00	1.59e-03	1.47e-01	1.00e+00	0.00e+00	2.58e+00	7.97e-04	0.00e+00	3.99e-03
chr11	12936834	12937938	ENSMUSG00000083859	0.5231	-	Gm12003	processed_pseudogene	1.91e-07	4.17e-05	-4.562242	3.89e+00	4.94e-02	1.39e+00	1.33e-03	1.58e+00	2.58e+00	7.49e+00	1.59e-03	3.99e-03	1.43e-01	1.58e+00	1.58e+00	1.00e+00	1.59e-03	1.59e-03	7.97e-04
chr17	34143307	34151553	ENSMUSG00000037548	0.4964	+	H2-DMb2	protein_coding	2.03e-07	4.38e-05	2.225933	6.88e+00	4.54e-02	9.29e+00	2.14e-01	7.27e+00	5.73e+00	7.64e+00	5.16e-02	1.75e-02	6.71e-02	9.00e+00	9.35e+00	9.53e+00	1.72e-01	2.19e-01	2.49e-01
chr7	139887477	139888351	ENSMUSG00000109710	0.5429	-	Gm4974	processed_pseudogene	2.52e-07	5.38e-05	-5.357552	3.29e+00	3.19e-02	0.00e+00	0.00e+00	1.00e+00	2.00e+00	6.87e+00	7.97e-04	2.39e-03	9.25e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr7	143513579	143549106	ENSMUSG00000059119	0.4462	-	Nap1l4	protein_coding	3.77e-07	7.93e-05	-1.850737	9.79e+00	1.64e-01	8.71e+00	4.55e-02	8.43e+00	9.01e+00	1.19e+01	3.58e-02	5.35e-02	4.04e-01	8.46e+00	8.38e+00	9.30e+00	3.64e-02	3.44e-02	6.56e-02
chr7	125547269	125548602	ENSMUSG00000108615	0.4205	+	Gm4973	processed_pseudogene	3.83e-07	7.96e-05	-4.198780	3.86e+00	5.29e-02	1.77e+00	2.13e-03	3.00e+00	1.00e+00	7.58e+00	5.58e-03	7.97e-04	1.52e-01	1.00e+00	2.32e+00	2.00e+00	7.97e-04	3.19e-03	2.39e-03
chr1	57774162	57948394	ENSMUSG00000038305	0.4336	+	Spats2l	protein_coding	3.88e-07	7.96e-05	-2.319439	7.87e+00	2.65e-02	6.25e+00	5.25e-03	7.09e+00	6.67e+00	9.85e+00	9.29e-03	6.95e-03	6.32e-02	6.34e+00	6.52e+00	5.88e+00	5.50e-03	6.26e-03	3.99e-03
chrY	1096861	1245759	ENSMUSG00000068457	0.3693	-	Uty	protein_coding	3.96e-07	8.01e-05	5.238405	3.33e-01	8.49e-06	5.64e+00	1.26e-03	0.00e+00	0.00e+00	1.00e+00	0.00e+00	0.00e+00	2.55e-05	5.46e+00	5.49e+00	5.95e+00	1.10e-03	1.12e-03	1.55e-03
chr3	107895821	107898686	ENSMUSG00000004032	0.4937	+	Gstm5	protein_coding	4.11e-07	8.21e-05	-2.250962	7.99e+00	3.89e-02	5.95e+00	8.08e-03	7.71e+00	7.00e+00	9.26e+00	2.57e-02	1.56e-02	7.54e-02	5.13e+00	6.46e+00	6.27e+00	4.18e-03	1.07e-02	9.35e-03
chr7	119442537	119459285	ENSMUSG00000030954	0.4352	-	Gp2	protein_coding	4.21e-07	8.32e-05	3.529253	2.85e+00	4.23e-03	6.16e+00	5.59e-02	3.17e+00	2.58e+00	2.81e+00	5.34e-03	3.34e-03	4.01e-03	7.30e+00	5.58e+00	5.58e+00	1.05e-01	3.14e-02	3.14e-02
chr9	20962361	20976781	ENSMUSG00000043895	0.5149	-	S1pr2	protein_coding	4.30e-07	8.40e-05	2.140024	7.38e+00	1.89e-02	9.53e+00	8.38e-02	7.10e+00	7.12e+00	7.93e+00	1.49e-02	1.52e-02	2.67e-02	9.37e+00	9.21e+00	1.00e+01	7.25e-02	6.51e-02	1.14e-01
chr13	66874081	66874659	ENSMUSG00000095847	0.4819	+	Gm5451	processed_pseudogene	4.66e-07	8.99e-05	-3.251539	5.14e+00	1.06e-01	3.78e+00	1.04e-02	3.17e+00	3.70e+00	8.56e+00	6.38e-03	9.57e-03	3.01e-01	3.46e+00	4.09e+00	3.81e+00	7.97e-03	1.28e-02	1.04e-02
chr2	49327377	49328151	ENSMUSG00000084177	0.4374	-	Gm13508	processed_pseudogene	6.65e-07	1.27e-04	-5.169925	2.57e+00	2.79e-02	0.00e+00	0.00e+00	0.00e+00	1.00e+00	6.71e+00	0.00e+00	7.97e-04	8.29e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr15	82221744	82224339	ENSMUSG00000068105	0.5331	-	Tnfrsf13c	protein_coding	1.24e-06	2.32e-04	2.219966	6.19e+00	3.22e-02	8.62e+00	1.51e-01	6.73e+00	4.95e+00	6.88e+00	4.03e-02	1.15e-02	4.49e-02	8.63e+00	8.40e+00	8.83e+00	1.51e-01	1.29e-01	1.74e-01

Download the DEG result list for TnfR1_vs_ColVICreTnfR1.
Download the whole result list for TnfR1_vs_ColVICreTnfR1.

DEG table for the contrast ColVICreTnfR1_vs_ColVICreLtbR

The following table presents the top 10% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast ColVICreTnfR1_vs_ColVICreLtbR. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right.

chromosome	start	end	gene_id	gc_content	strand	gene_name	biotype	p-value_deseq	FDR_deseq	log2_normalized_fold_change_ColVICreTnfR1_vs_ColVICreLtbR	log2_normalized_mean_counts_ColVICreTnfR1	rpgm_normalized_mean_counts_ColVICreTnfR1	log2_normalized_mean_counts_ColVICreLtbR	rpgm_normalized_mean_counts_ColVICreLtbR	log2_normalized_counts_GK3R158-ColVICreTnfR1-T7	log2_normalized_counts_GK3R159-ColVICreTnfR1-T8	log2_normalized_counts_GK3R160-ColVICreTnfR1-T9	rpgm_normalized_counts_GK3R158-ColVICreTnfR1-T7	rpgm_normalized_counts_GK3R159-ColVICreTnfR1-T8	rpgm_normalized_counts_GK3R160-ColVICreTnfR1-T9	log2_normalized_counts_GK3R161-ColVICreLtbR-L10	log2_normalized_counts_GK3R162-ColVICreLtbR-L11	log2_normalized_counts_GK3R163-ColVICreLtbR-L12	rpgm_normalized_counts_GK3R161-ColVICreLtbR-L10	rpgm_normalized_counts_GK3R162-ColVICreLtbR-L11	rpgm_normalized_counts_GK3R163-ColVICreLtbR-L12
chrX	103460375	103483217	ENSMUSG00000086503	0.4122	-	Xist	lincRNA	7.73e-27	1.27e-22	7.69116	0.00e+00	0.00e+00	7.63e+00	7.79e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	7.79e+00	7.01e+00	8.07e+00	8.37e-02	4.85e-02	1.02e-01
chrX	162961992	162964599	ENSMUSG00000040808	0.4555	-	S100g	protein_coding	1.47e-25	1.20e-21	6.22859	4.78e+00	1.96e-02	1.02e+01	1.52e+00	4.64e+00	5.25e+00	4.46e+00	1.72e-02	2.65e-02	1.50e-02	9.38e+00	9.00e+00	1.23e+01	4.76e-01	3.66e-01	3.72e+00
chr1	87124973	87127912	ENSMUSG00000036500	0.5670	+	Akp3	protein_coding	2.16e-21	1.18e-17	6.79913	1.33e+00	1.06e-03	6.45e+00	1.62e-01	3.00e+00	0.00e+00	1.00e+00	2.79e-03	0.00e+00	3.99e-04	1.00e+00	8.70e+00	9.66e+00	3.99e-04	1.65e-01	3.22e-01
chr6	78422711	78428667	ENSMUSG00000059654	0.3937	+	Reg1	protein_coding	1.81e-17	7.43e-14	4.26323	4.92e+00	3.44e-02	9.09e+00	6.72e-01	3.00e+00	4.91e+00	6.85e+00	4.81e-03	1.99e-02	7.84e-02	6.32e+00	1.05e+01	1.05e+01	5.43e-02	9.66e-01	9.97e-01
chrY	1010543	1028847	ENSMUSG00000069049	0.3494	+	Eif2s3y	protein_coding	5.20e-14	1.70e-10	-7.24793	7.23e+00	2.69e-02	0.00e+00	0.00e+00	6.95e+00	7.31e+00	7.43e+00	2.19e-02	2.82e-02	3.06e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00
chr11	31357307	31370074	ENSMUSG00000020303	0.4995	-	Stc2	protein_coding	3.37e-13	9.21e-10	3.30485	2.39e+00	7.07e-04	5.59e+00	8.33e-03	3.00e+00	1.58e+00	2.58e+00	1.06e-03	3.03e-04	7.57e-04	6.67e+00	4.95e+00	5.13e+00	1.53e-02	4.54e-03	5.15e-03
chr11	53567379	53601967	ENSMUSG00000018395	0.4385	+	Kif3a	protein_coding	3.02e-12	7.08e-09	2.94553	8.05e+00	2.83e-02	1.10e+01	2.19e-01	7.88e+00	7.80e+00	8.47e+00	2.45e-02	2.33e-02	3.71e-02	1.11e+01	1.10e+01	1.10e+01	2.24e-01	2.22e-01	2.10e-01
chr2	143150830	143151630	ENSMUSG00000083047	0.4906	-	Gm14082	processed_pseudogene	4.53e-12	9.30e-09	3.62449	8.62e-01	7.97e-04	3.55e+00	1.89e-02	1.00e+00	0.00e+00	1.58e+00	7.97e-04	0.00e+00	1.59e-03	6.00e+00	2.32e+00	2.32e+00	5.02e-02	3.19e-03	3.19e-03
chr14	51763878	51773590	ENSMUSG00000060615	0.4375	-	Ang4	protein_coding	5.96e-12	1.09e-08	2.97694	8.02e+00	2.16e-01	1.12e+01	1.70e+00	8.72e+00	8.66e+00	6.69e+00	2.94e-01	2.82e-01	7.13e-02	1.15e+01	1.12e+01	1.10e+01	2.01e+00	1.63e+00	1.48e+00
chr17	39843013	39846341	ENSMUSG00000097971	0.6912	+	Gm26917	lincRNA	2.11e-11	3.47e-08	3.63662	5.68e+00	4.67e-02	9.37e+00	5.89e-01	6.63e+00	4.17e+00	6.23e+00	7.26e-02	1.26e-02	5.48e-02	8.78e+00	8.76e+00	1.06e+01	3.26e-01	3.21e-01	1.12e+00
chr1	173274382	173277777	ENSMUSG00000079180	0.4031	-	Mptx2	protein_coding	3.22e-11	4.80e-08	3.22248	9.27e+00	5.63e-01	1.27e+01	5.26e+00	1.02e+01	9.64e+00	7.92e+00	9.09e-01	5.99e-01	1.81e-01	1.20e+01	1.30e+01	1.31e+01	3.03e+00	6.14e+00	6.62e+00
chr11	100228845	100232078	ENSMUSG00000084257	0.4858	-	Gm11597	unprocessed_pseudogene	6.68e-11	9.13e-08	4.39232	0.00e+00	0.00e+00	4.15e+00	1.59e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	5.13e+00	3.00e+00	4.32e+00	2.71e-02	5.58e-03	1.52e-02
chr17	34969190	34972156	ENSMUSG00000091971	0.5895	-	Hspa1a	protein_coding	1.01e-10	1.28e-07	3.98089	3.60e+00	6.45e-03	7.28e+00	1.10e-01	3.00e+00	3.81e+00	4.00e+00	3.87e-03	7.19e-03	8.29e-03	5.78e+00	8.46e+00	7.59e+00	2.99e-02	1.94e-01	1.06e-01
chrY	1260771	1286629	ENSMUSG00000069045	0.3678	-	Ddx3y	protein_coding	1.12e-10	1.31e-07	-6.42626	6.78e+00	6.06e-03	3.33e-01	1.78e-05	6.29e+00	6.73e+00	7.32e+00	4.11e-03	5.60e-03	8.48e-03	1.00e+00	0.00e+00	0.00e+00	5.33e-05	0.00e+00	0.00e+00
chr7	103826534	103828096	ENSMUSG00000052305	0.4651	-	Hbb-bs	protein_coding	1.73e-09	1.89e-06	2.57174	5.98e+00	2.44e-02	8.55e+00	1.47e-01	5.95e+00	5.36e+00	6.61e+00	2.26e-02	1.48e-02	3.59e-02	9.09e+00	8.69e+00	7.88e+00	2.02e-01	1.53e-01	8.66e-02
chr17	37193892	37196095	ENSMUSG00000035186	0.4111	+	Ubd	protein_coding	4.32e-09	4.42e-06	-2.82489	1.25e+01	3.46e+00	9.61e+00	4.87e-01	1.27e+01	1.25e+01	1.22e+01	3.93e+00	3.50e+00	2.94e+00	9.98e+00	9.32e+00	9.54e+00	6.16e-01	3.90e-01	4.56e-01
chr8	21702519	21703645	ENSMUSG00000058618	0.4295	-	AY761184	protein_coding	5.47e-09	5.28e-06	2.44865	9.55e+00	5.91e-01	1.21e+01	3.23e+00	1.01e+01	9.81e+00	8.77e+00	7.95e-01	6.57e-01	3.21e-01	1.23e+01	1.22e+01	1.18e+01	3.60e+00	3.46e+00	2.62e+00
chr8	21325887	21327020	ENSMUSG00000074437	0.4321	-	Defa29	protein_coding	1.15e-08	1.05e-05	2.34788	9.45e+00	5.37e-01	1.18e+01	2.74e+00	9.72e+00	9.85e+00	8.78e+00	6.15e-01	6.75e-01	3.21e-01	1.22e+01	1.19e+01	1.15e+01	3.36e+00	2.79e+00	2.06e+00
chr9	108403611	108428484	ENSMUSG00000047220	0.4314	-	Ccdc36	protein_coding	2.12e-08	1.83e-05	2.43759	8.65e+00	1.81e-01	1.12e+01	9.85e-01	8.27e+00	8.24e+00	9.46e+00	1.28e-01	1.25e-01	2.92e-01	1.10e+01	1.10e+01	1.16e+01	8.47e-01	8.60e-01	1.25e+00
chr6	48739054	48743795	ENSMUSG00000090019	0.5101	+	Gimap1	protein_coding	2.98e-08	2.45e-05	-2.54322	1.04e+01	2.54e-01	7.88e+00	4.34e-02	1.05e+01	1.04e+01	1.04e+01	2.66e-01	2.51e-01	2.44e-01	8.16e+00	7.74e+00	7.73e+00	5.24e-02	3.91e-02	3.87e-02
chr3	152153447	152154116	ENSMUSG00000084343	0.5194	+	Gm16198	processed_pseudogene	3.84e-08	2.98e-05	3.28540	3.33e-01	2.66e-04	3.29e+00	9.57e-03	0.00e+00	1.00e+00	0.00e+00	0.00e+00	7.97e-04	0.00e+00	4.75e+00	2.81e+00	2.32e+00	2.07e-02	4.78e-03	3.19e-03
chr11	61653265	61672784	ENSMUSG00000004837	0.5285	+	Grap	protein_coding	4.01e-08	2.98e-05	-2.82153	9.00e+00	1.49e-01	6.03e+00	2.08e-02	9.04e+00	8.89e+00	9.07e+00	1.53e-01	1.37e-01	1.56e-01	6.21e+00	6.75e+00	5.13e+00	2.13e-02	3.12e-02	9.90e-03
chr6	58584523	58695676	ENSMUSG00000029802	0.3979	+	Abcg2	protein_coding	4.18e-08	2.98e-05	-2.37919	1.05e+01	2.84e-01	9.52e+00	5.44e-02	1.33e+01	9.58e+00	8.53e+00	7.67e-01	5.67e-02	2.73e-02	9.41e+00	9.45e+00	9.70e+00	5.03e-02	5.16e-02	6.14e-02
chr4	63367125	63403354	ENSMUSG00000039158	0.5253	-	Akna	protein_coding	4.86e-08	3.32e-05	-2.58288	1.01e+01	3.36e-01	7.57e+00	5.59e-02	9.40e+00	1.03e+01	1.06e+01	1.97e-01	3.62e-01	4.50e-01	7.80e+00	7.69e+00	7.21e+00	6.47e-02	6.01e-02	4.29e-02
chr7	110627661	110629820	ENSMUSG00000030790	0.5301	+	Adm	protein_coding	5.43e-08	3.54e-05	-3.30288	7.57e+00	6.32e-02	3.24e+00	6.12e-03	7.04e+00	8.17e+00	7.50e+00	4.15e-02	9.11e-02	5.70e-02	5.25e+00	4.46e+00	0.00e+00	1.17e-02	6.65e-03	0.00e+00
chr1	83116766	83119167	ENSMUSG00000026166	0.3926	+	Ccl20	protein_coding	5.61e-08	3.54e-05	-2.45599	8.44e+00	1.51e-01	5.79e+00	2.72e-02	8.46e+00	8.29e+00	8.58e+00	1.52e-01	1.35e-01	1.66e-01	4.64e+00	6.23e+00	6.51e+00	1.04e-02	3.21e-02	3.90e-02
chr7	17138871	17139472	ENSMUSG00000108694	0.5150	-	Gm7287	processed_pseudogene	7.28e-08	4.42e-05	3.32193	8.62e-01	1.33e-03	3.22e+00	2.05e-02	0.00e+00	2.58e+00	0.00e+00	0.00e+00	3.99e-03	0.00e+00	6.07e+00	3.58e+00	0.00e+00	5.26e-02	8.77e-03	0.00e+00
chr17	28558210	28560766	ENSMUSG00000024225	0.5264	-	Clps	protein_coding	7.55e-08	4.42e-05	2.62779	5.78e+00	4.29e-02	8.50e+00	2.69e-01	6.38e+00	5.95e+00	5.00e+00	6.06e-02	4.51e-02	2.29e-02	8.69e+00	8.55e+00	8.26e+00	3.05e-01	2.76e-01	2.25e-01
chr5	8660077	8748575	ENSMUSG00000040584	0.3991	+	Abcb1a	protein_coding	1.79e-07	1.01e-04	-2.31642	1.05e+01	3.28e-01	8.29e+00	6.57e-02	1.08e+01	1.09e+01	9.87e+00	3.75e-01	4.14e-01	1.96e-01	8.41e+00	8.35e+00	8.13e+00	7.08e-02	6.80e-02	5.84e-02
chr1	171518122	171535294	ENSMUSG00000038209	0.4250	-	Itln1	protein_coding	2.04e-07	1.12e-04	2.46771	1.18e+01	1.32e+00	1.42e+01	7.33e+00	1.18e+01	1.17e+01	1.17e+01	1.40e+00	1.28e+00	1.30e+00	1.46e+01	1.40e+01	1.40e+01	9.38e+00	6.35e+00	6.26e+00
chr19	5795690	5802672	ENSMUSG00000092341	0.4249	-	Malat1	lincRNA	2.18e-07	1.16e-04	1.98547	7.04e+00	1.11e-01	1.01e+01	4.40e-01	6.97e+00	4.70e+00	9.45e+00	4.88e-02	9.85e-03	2.74e-01	1.03e+01	9.67e+00	1.03e+01	4.88e-01	3.21e-01	5.12e-01
chr7	72648757	72649311	ENSMUSG00000081895	0.4757	-	Rpl17-ps10	processed_pseudogene	2.39e-07	1.22e-04	-2.29336	9.37e+00	5.31e-01	6.33e+00	1.08e-01	9.46e+00	9.57e+00	9.07e+00	5.59e-01	6.04e-01	4.29e-01	4.09e+00	8.15e+00	6.74e+00	1.28e-02	2.26e-01	8.45e-02
chr12	113325240	113330523	ENSMUSG00000076614	0.5068	-	Ighg1	IG_C_gene	2.93e-07	1.45e-04	-2.84774	8.34e+00	9.55e-02	5.67e+00	1.30e-02	8.97e+00	7.15e+00	8.90e+00	1.28e-01	3.61e-02	1.22e-01	5.93e+00	5.21e+00	5.86e+00	1.53e-02	9.20e-03	1.46e-02
chr6	119479668	119482630	ENSMUSG00000030019	0.5491	+	Fbxl14	protein_coding	3.07e-07	1.48e-04	-2.07653	1.06e+01	6.23e-01	8.15e+00	1.47e-01	1.02e+01	1.08e+01	1.08e+01	4.51e-01	7.15e-01	7.02e-01	6.39e+00	9.24e+00	8.81e+00	3.23e-02	2.35e-01	1.75e-01
chr3	98222156	98236748	ENSMUSG00000027876	0.4523	+	Reg4	protein_coding	3.25e-07	1.52e-04	2.29409	6.59e+00	5.91e-02	8.90e+00	2.92e-01	6.60e+00	6.27e+00	6.89e+00	5.86e-02	4.64e-02	7.21e-02	8.99e+00	8.90e+00	8.81e+00	3.10e-01	2.92e-01	2.74e-01
chr8	21455445	21456560	ENSMUSG00000079114	0.4265	-	Gm7849	protein_coding	3.45e-07	1.57e-04	2.13419	1.13e+01	1.87e+00	1.34e+01	8.20e+00	1.17e+01	1.11e+01	1.10e+01	2.47e+00	1.63e+00	1.50e+00	1.39e+01	1.33e+01	1.29e+01	1.15e+01	7.37e+00	5.68e+00
chr10	79890853	79892656	ENSMUSG00000061780	0.5649	+	Cfd	protein_coding	5.06e-07	2.24e-04	4.44001	1.30e+00	3.52e-03	5.01e+00	9.21e-02	3.91e+00	0.00e+00	0.00e+00	1.06e-02	0.00e+00	0.00e+00	0.00e+00	7.32e+00	7.70e+00	0.00e+00	1.20e-01	1.56e-01
chr13	41182495	41220405	ENSMUSG00000021364	0.4502	-	Elovl2	protein_coding	6.19e-07	2.67e-04	2.90689	3.33e-01	8.22e-05	1.92e+00	2.22e-03	1.00e+00	0.00e+00	0.00e+00	2.47e-04	0.00e+00	0.00e+00	4.75e+00	1.00e+00	0.00e+00	6.42e-03	2.47e-04	0.00e+00
chr9	50494525	50505482	ENSMUSG00000032068	0.4575	+	Plet1	protein_coding	7.01e-07	2.95e-04	-2.08199	7.77e+00	6.75e-02	5.76e+00	1.57e-02	6.99e+00	8.59e+00	7.73e+00	3.54e-02	1.08e-01	5.92e-02	5.32e+00	5.55e+00	6.39e+00	1.09e-02	1.29e-02	2.33e-02
chr1	90765923	90843971	ENSMUSG00000048126	0.4734	-	Col6a3	protein_coding	8.74e-07	3.58e-04	2.48686	5.84e+00	7.15e-03	8.35e+00	4.06e-02	6.36e+00	5.25e+00	5.91e+00	9.81e-03	4.48e-03	7.15e-03	8.54e+00	7.85e+00	8.67e+00	4.48e-02	2.77e-02	4.93e-02
chr1	45311538	45349706	ENSMUSG00000026043	0.3586	+	Col3a1	protein_coding	9.59e-07	3.77e-04	2.54404	5.62e+00	5.00e-03	8.11e+00	2.96e-02	5.75e+00	5.32e+00	5.78e+00	5.44e-03	4.01e-03	5.55e-03	7.43e+00	8.44e+00	8.44e+00	1.77e-02	3.56e-02	3.56e-02
chr19	39269405	39330713	ENSMUSG00000003053	0.3735	+	Cyp2c29	protein_coding	9.64e-07	3.77e-04	4.50779	1.11e+00	1.92e-04	5.11e+00	6.89e-03	2.32e+00	1.00e+00	0.00e+00	4.62e-04	1.15e-04	0.00e+00	2.81e+00	7.01e+00	5.52e+00	6.93e-04	1.48e-02	5.19e-03
chr5	4081145	4104746	ENSMUSG00000001467	0.4239	-	Cyp51	protein_coding	1.05e-06	4.01e-04	-2.47009	1.25e+01	9.87e-01	9.94e+00	1.78e-01	1.24e+01	1.28e+01	1.23e+01	9.10e-01	1.19e+00	8.65e-01	1.05e+01	1.01e+01	9.22e+00	2.51e-01	1.82e-01	1.01e-01
chr11	110025634	110095978	ENSMUSG00000041828	0.3985	-	Abca8a	protein_coding	1.08e-06	4.02e-04	3.22987	3.85e+00	2.11e-03	7.40e+00	2.09e-02	5.17e+00	2.81e+00	3.58e+00	4.27e-03	7.32e-04	1.34e-03	7.20e+00	7.19e+00	7.80e+00	1.78e-02	1.77e-02	2.71e-02
chr7	101317086	101346626	ENSMUSG00000030688	0.5159	+	Stard10	protein_coding	1.21e-06	4.42e-04	1.88023	7.72e+00	3.24e-02	9.63e+00	1.20e-01	7.29e+00	7.64e+00	8.25e+00	2.30e-02	2.94e-02	4.49e-02	9.94e+00	9.73e+00	9.20e+00	1.46e-01	1.26e-01	8.72e-02
chr19	41482645	41562246	ENSMUSG00000025019	0.3869	+	Lcor	protein_coding	1.80e-06	6.42e-04	2.63881	5.47e+00	1.15e-02	8.14e+00	7.31e-02	5.04e+00	4.95e+00	6.41e+00	7.58e-03	7.11e-03	1.99e-02	7.88e+00	7.57e+00	8.97e+00	5.57e-02	4.48e-02	1.19e-01
chr8	21593375	21594508	ENSMUSG00000079113	0.4250	-	Gm7861	protein_coding	2.25e-06	7.85e-04	2.11003	1.20e+01	3.09e+00	1.41e+01	1.34e+01	1.24e+01	1.18e+01	1.19e+01	3.94e+00	2.59e+00	2.75e+00	1.46e+01	1.40e+01	1.37e+01	1.82e+01	1.21e+01	9.79e+00
chr8	21095074	21096050	ENSMUSG00000061958	0.4289	-	Gm14851	protein_coding	2.31e-06	7.91e-04	1.93287	1.00e+01	8.28e-01	1.19e+01	3.16e+00	9.99e+00	1.03e+01	9.68e+00	8.12e-01	1.02e+00	6.52e-01	1.21e+01	1.21e+01	1.16e+01	3.43e+00	3.55e+00	2.51e+00
chr6	128992952	129008040	ENSMUSG00000087150	0.4245	+	BC064078	transcribed_unprocessed_pseudogene	2.50e-06	8.37e-04	-4.36257	5.54e+00	3.53e-02	1.06e+00	1.00e-03	5.00e+00	5.86e+00	5.75e+00	2.33e-02	4.28e-02	3.98e-02	1.58e+00	1.58e+00	0.00e+00	1.50e-03	1.50e-03	0.00e+00
chr9	64173375	64178666	ENSMUSG00000032399	0.4271	+	Rpl4	protein_coding	2.80e-06	9.19e-04	-2.07949	1.14e+01	9.68e-01	9.37e+00	2.29e-01	1.16e+01	1.15e+01	1.12e+01	1.05e+00	1.03e+00	8.21e-01	9.27e+00	9.48e+00	9.38e+00	2.12e-01	2.46e-01	2.28e-01
chr13	8940336	8940977	ENSMUSG00000061988	0.5171	-	Rpl10a-ps2	processed_pseudogene	2.95e-06	9.50e-04	2.00000	1.39e+00	2.39e-03	2.81e+00	1.20e-02	0.00e+00	1.00e+00	3.17e+00	0.00e+00	7.97e-04	6.38e-03	5.25e+00	3.17e+00	0.00e+00	2.95e-02	6.38e-03	0.00e+00
chr8	21055047	21056016	ENSMUSG00000074446	0.4340	+	Defa23	protein_coding	3.04e-06	9.58e-04	1.88982	1.01e+01	8.45e-01	1.20e+01	3.13e+00	1.04e+01	1.01e+01	9.87e+00	1.01e+00	8.33e-01	6.93e-01	1.24e+01	1.18e+01	1.18e+01	4.05e+00	2.73e+00	2.63e+00
chr18	64340364	64398488	ENSMUSG00000045991	0.4448	+	Onecut2	protein_coding	3.13e-06	9.58e-04	2.77323	4.27e+00	2.72e-03	7.74e+00	1.90e-02	2.32e+00	4.00e+00	6.48e+00	3.05e-04	1.14e-03	6.71e-03	6.61e+00	7.92e+00	8.69e+00	7.40e-03	1.84e-02	3.13e-02
chr5	20758663	20882124	ENSMUSG00000039987	0.3960	-	Phtf2	protein_coding	3.16e-06	9.58e-04	-2.52398	8.15e+00	1.80e-02	5.56e+00	3.08e-03	7.91e+00	8.30e+00	8.24e+00	1.51e-02	1.99e-02	1.91e-02	6.07e+00	5.67e+00	4.95e+00	4.18e-03	3.17e-03	1.90e-03
chrY	897788	956786	ENSMUSG00000056673	0.3872	+	Kdm5d	protein_coding	3.21e-06	9.58e-04	-5.37504	5.68e+00	1.54e-03	3.33e-01	9.47e-06	6.36e+00	5.73e+00	4.95e+00	2.30e-03	1.48e-03	8.52e-04	1.00e+00	0.00e+00	0.00e+00	2.84e-05	0.00e+00	0.00e+00
chr19	23141226	23166911	ENSMUSG00000033863	0.4756	+	Klf9	protein_coding	3.96e-06	1.16e-03	2.42414	4.13e+00	7.79e-03	7.12e+00	4.31e-02	4.32e+00	2.32e+00	5.75e+00	5.84e-03	1.23e-03	1.63e-02	7.48e+00	6.87e+00	7.01e+00	5.44e-02	3.57e-02	3.93e-02
chr8	21427411	21428391	ENSMUSG00000094662	0.4139	+	Defa36	protein_coding	4.23e-06	1.22e-03	2.07874	1.11e+01	1.76e+00	1.33e+01	7.44e+00	1.16e+01	1.14e+01	1.03e+01	2.33e+00	2.00e+00	9.53e-01	1.36e+01	1.31e+01	1.32e+01	9.26e+00	6.30e+00	6.76e+00
chr2	174284320	174346744	ENSMUSG00000027523	0.4795	+	Gnas	protein_coding	4.54e-06	1.28e-03	-1.64993	1.08e+01	8.60e-02	8.81e+00	2.74e-02	1.08e+01	1.11e+01	1.04e+01	8.82e-02	1.06e-01	6.42e-02	7.20e+00	9.54e+00	9.68e+00	7.00e-03	3.57e-02	3.94e-02
chr1	156835287	156837924	ENSMUSG00000101964	0.4284	-	Gm28693	transcribed_processed_pseudogene	5.67e-06	1.58e-03	5.00000	0.00e+00	0.00e+00	4.97e+00	1.24e-02	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	5.09e+00	4.52e+00	5.29e+00	1.32e-02	8.77e-03	1.52e-02
chr6	34598500	34775473	ENSMUSG00000029761	0.4295	+	Cald1	protein_coding	6.20e-06	1.70e-03	2.21913	6.50e+00	5.88e-03	8.60e+00	2.76e-02	7.09e+00	6.02e+00	6.39e+00	8.44e-03	4.00e-03	5.19e-03	7.48e+00	9.30e+00	9.01e+00	1.11e-02	3.94e-02	3.23e-02
chr11	94936224	94953042	ENSMUSG00000001506	0.5392	+	Col1a1	protein_coding	6.38e-06	1.72e-03	2.57009	5.12e+00	6.57e-03	7.90e+00	3.98e-02	6.39e+00	4.81e+00	4.17e+00	1.29e-02	4.19e-03	2.64e-03	7.06e+00	8.28e+00	8.36e+00	2.05e-02	4.80e-02	5.09e-02
chr8	5083219	5105351	ENSMUSG00000023073	0.3631	-	Slc10a2	protein_coding	6.52e-06	1.72e-03	-1.70165	8.82e+00	1.19e-01	7.11e+00	3.63e-02	8.71e+00	9.63e+00	8.12e+00	1.00e-01	1.89e-01	6.63e-02	6.13e+00	7.50e+00	7.70e+00	1.65e-02	4.29e-02	4.94e-02
chr8	21297439	21298375	ENSMUSG00000074439	0.4130	+	Defa5	protein_coding	6.60e-06	1.72e-03	1.95830	1.04e+01	1.09e+00	1.25e+01	4.22e+00	1.09e+01	1.07e+01	9.75e+00	1.41e+00	1.21e+00	6.39e-01	1.28e+01	1.22e+01	1.24e+01	5.19e+00	3.40e+00	4.09e+00
chr8	4325210	4360020	ENSMUSG00000023235	0.4484	+	Ccl25	protein_coding	7.06e-06	1.74e-03	-2.20442	1.26e+01	4.83e-01	1.04e+01	1.05e-01	1.26e+01	1.31e+01	1.22e+01	4.64e-01	6.42e-01	3.42e-01	1.09e+01	1.03e+01	1.01e+01	1.39e-01	9.25e-02	8.24e-02
chr8	21191614	21192549	ENSMUSG00000074442	0.4295	+	Defa31	protein_coding	7.10e-06	1.74e-03	1.85621	1.06e+01	1.19e+00	1.25e+01	4.31e+00	1.09e+01	1.06e+01	1.03e+01	1.43e+00	1.17e+00	9.61e-01	1.28e+01	1.23e+01	1.23e+01	5.45e+00	3.85e+00	3.62e+00
chr8	23411502	23449632	ENSMUSG00000031548	0.4776	+	Sfrp1	protein_coding	7.11e-06	1.74e-03	3.79518	2.21e+00	1.06e-03	6.16e+00	1.77e-02	2.32e+00	1.00e+00	3.32e+00	9.10e-04	2.27e-04	2.05e-03	6.07e+00	5.46e+00	6.97e+00	1.50e-02	9.78e-03	2.82e-02
chr17	34956436	34959238	ENSMUSG00000090877	0.5812	-	Hspa1b	protein_coding	7.20e-06	1.74e-03	3.11075	3.90e+00	8.93e-03	6.67e+00	8.18e-02	3.91e+00	4.46e+00	3.32e+00	8.53e-03	1.28e-02	5.48e-03	4.95e+00	7.80e+00	7.25e+00	1.83e-02	1.35e-01	9.20e-02
chr14	68563388	68582086	ENSMUSG00000022057	0.3796	-	Adamdec1	protein_coding	7.32e-06	1.74e-03	1.87080	8.16e+00	1.44e-01	1.02e+01	5.26e-01	9.12e+00	7.65e+00	7.69e+00	2.49e-01	8.95e-02	9.22e-02	1.05e+01	9.82e+00	1.02e+01	6.34e-01	4.04e-01	5.41e-01
chr3	95410346	95411207	ENSMUSG00000096177	0.5580	-	Gm5070	processed_pseudogene	7.32e-06	1.74e-03	2.58496	1.19e+00	1.06e-03	3.37e+00	1.04e-02	1.00e+00	1.00e+00	1.58e+00	7.97e-04	7.97e-04	1.59e-03	4.52e+00	1.58e+00	4.00e+00	1.75e-02	1.59e-03	1.20e-02
chr19	5490455	5495201	ENSMUSG00000056201	0.5264	+	Cfl1	protein_coding	7.53e-06	1.76e-03	-1.93896	1.08e+01	6.04e-01	8.86e+00	1.57e-01	1.07e+01	1.07e+01	1.10e+01	5.81e-01	5.47e-01	6.83e-01	8.84e+00	8.77e+00	8.98e+00	1.54e-01	1.47e-01	1.70e-01
chr8	68880491	68907448	ENSMUSG00000015568	0.4217	+	Lpl	protein_coding	7.66e-06	1.77e-03	2.95420	4.28e+00	2.58e-03	7.40e+00	2.08e-02	5.09e+00	2.81e+00	4.95e+00	3.70e-03	6.73e-04	3.37e-03	6.49e+00	7.67e+00	8.05e+00	9.98e-03	2.27e-02	2.96e-02
chr1	9941959	9944118	ENSMUSG00000098234	0.4440	-	Snhg6	lincRNA	7.94e-06	1.81e-03	-1.61977	9.12e+00	4.23e-01	7.03e+00	1.37e-01	9.20e+00	9.28e+00	8.86e+00	4.46e-01	4.71e-01	3.52e-01	5.09e+00	7.92e+00	8.07e+00	2.50e-02	1.83e-01	2.03e-01
chr10	60181532	60219260	ENSMUSG00000057337	0.5064	-	Chst3	protein_coding	8.12e-06	1.83e-03	-2.25061	8.93e+00	9.24e-02	6.65e+00	1.93e-02	8.77e+00	9.21e+00	8.82e+00	8.17e-02	1.11e-01	8.49e-02	6.83e+00	7.00e+00	6.11e+00	2.12e-02	2.38e-02	1.28e-02
chr19	32122727	32389714	ENSMUSG00000040451	0.4386	-	Sgms1	protein_coding	8.29e-06	1.84e-03	-1.81746	1.00e+01	6.85e-02	8.26e+00	1.94e-02	9.12e+00	1.06e+01	1.03e+01	3.40e-02	9.60e-02	7.54e-02	7.71e+00	8.59e+00	8.49e+00	1.28e-02	2.35e-02	2.19e-02
chr8	119992438	120052793	ENSMUSG00000031825	0.5098	+	Crispld2	protein_coding	9.28e-06	2.03e-03	2.32780	5.40e+00	9.67e-03	7.92e+00	4.94e-02	6.21e+00	4.25e+00	5.75e+00	1.47e-02	3.63e-03	1.07e-02	7.91e+00	7.63e+00	8.22e+00	4.83e-02	3.97e-02	6.00e-02
chrY	1096861	1245759	ENSMUSG00000068457	0.3693	-	Uty	protein_coding	9.73e-06	2.10e-03	-5.23840	5.64e+00	1.26e-03	3.33e-01	8.49e-06	5.46e+00	5.49e+00	5.95e+00	1.10e-03	1.12e-03	1.55e-03	0.00e+00	1.00e+00	0.00e+00	0.00e+00	2.55e-05	0.00e+00
chr10	76708792	76726168	ENSMUSG00000001119	0.5416	-	Col6a1	protein_coding	1.02e-05	2.17e-03	2.76609	4.60e+00	7.43e-03	7.35e+00	5.23e-02	4.75e+00	4.00e+00	5.04e+00	7.94e-03	4.58e-03	9.77e-03	6.64e+00	7.60e+00	7.80e+00	3.02e-02	5.89e-02	6.78e-02
chr6	4504814	4541544	ENSMUSG00000029661	0.4094	+	Col1a2	protein_coding	1.08e-05	2.27e-03	2.18858	6.19e+00	6.69e-03	8.38e+00	3.08e-02	6.39e+00	5.86e+00	6.32e+00	7.60e-03	5.22e-03	7.24e-03	8.09e+00	8.42e+00	8.63e+00	2.49e-02	3.12e-02	3.63e-02
chr6	142785204	142804502	ENSMUSG00000048473	0.4434	-	Sult6b2	protein_coding	1.21e-05	2.51e-03	2.61298	4.38e+00	6.69e-03	7.17e+00	4.18e-02	3.32e+00	3.17e+00	6.64e+00	1.56e-03	1.38e-03	1.71e-02	4.58e+00	8.43e+00	8.49e+00	3.98e-03	5.95e-02	6.19e-02
chr8	79965851	80058006	ENSMUSG00000064325	0.4056	-	Hhip	protein_coding	1.23e-05	2.52e-03	2.77466	4.03e+00	2.07e-03	6.83e+00	1.49e-02	4.46e+00	3.46e+00	4.17e+00	2.71e-03	1.29e-03	2.20e-03	7.18e+00	6.43e+00	6.88e+00	1.86e-02	1.10e-02	1.51e-02
chr19	39113898	39187072	ENSMUSG00000067229	0.4017	+	Cyp2c66	protein_coding	1.31e-05	2.64e-03	2.88011	4.21e+00	2.08e-03	6.63e+00	1.61e-02	3.70e+00	4.75e+00	4.17e+00	1.36e-03	2.96e-03	1.93e-03	4.86e+00	8.11e+00	6.93e+00	3.18e-03	3.13e-02	1.38e-02
chr2	164940780	164955850	ENSMUSG00000017737	0.5213	+	Mmp9	protein_coding	1.32e-05	2.64e-03	2.50597	5.30e+00	8.43e-03	7.80e+00	4.89e-02	5.55e+00	4.75e+00	5.58e+00	9.77e-03	5.52e-03	9.99e-03	7.22e+00	8.02e+00	8.15e+00	3.14e-02	5.50e-02	6.01e-02
chr19	18631950	18652194	ENSMUSG00000037847	0.4379	+	Nmrk1	protein_coding	1.48e-05	2.92e-03	-2.00000	8.34e+00	3.43e-02	6.36e+00	8.50e-03	8.24e+00	8.73e+00	8.05e+00	3.13e-02	4.41e-02	2.75e-02	6.11e+00	6.51e+00	6.46e+00	7.08e-03	9.37e-03	9.06e-03
chr15	75044018	75048830	ENSMUSG00000079018	0.4820	-	Ly6c1	protein_coding	1.52e-05	2.96e-03	2.61005	3.96e+00	5.01e-03	6.83e+00	3.20e-02	4.91e+00	2.58e+00	4.39e+00	8.06e-03	1.39e-03	5.56e-03	7.22e+00	6.52e+00	6.74e+00	4.12e-02	2.53e-02	2.95e-02
chr5	21543559	21575904	ENSMUSG00000039883	0.4349	+	Lrrc17	protein_coding	1.53e-05	2.96e-03	1.76299	8.68e+00	1.56e-01	1.07e+01	5.31e-01	8.25e+00	8.02e+00	9.76e+00	9.96e-02	8.49e-02	2.84e-01	1.06e+01	1.05e+01	1.09e+01	5.00e-01	4.78e-01	6.17e-01
chr2	174760619	174784042	ENSMUSG00000027524	0.4824	+	Edn3	protein_coding	1.61e-05	3.06e-03	-1.69169	9.61e+00	2.35e-01	7.87e+00	7.25e-02	9.48e+00	9.96e+00	9.41e+00	2.11e-01	2.94e-01	2.00e-01	7.21e+00	8.16e+00	8.24e+00	4.35e-02	8.47e-02	8.94e-02
chr3	97125511	97126113	ENSMUSG00000106324	0.4196	-	Gm43222	processed_pseudogene	1.67e-05	3.15e-03	3.32193	0.00e+00	0.00e+00	3.16e+00	7.18e-03	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	0.00e+00	4.00e+00	2.32e+00	3.17e+00	1.20e-02	3.19e-03	6.38e-03
chr8	21665797	21666732	ENSMUSG00000063206	0.4071	+	Defa34	protein_coding	1.70e-05	3.17e-03	1.97826	1.12e+01	1.82e+00	1.32e+01	7.15e+00	1.16e+01	1.14e+01	1.05e+01	2.34e+00	2.03e+00	1.08e+00	1.35e+01	1.30e+01	1.32e+01	8.39e+00	5.98e+00	7.09e+00
chr8	21565386	21566349	ENSMUSG00000065956	0.4118	+	Defa37	protein_coding	1.72e-05	3.17e-03	2.05633	1.17e+01	2.73e+00	1.39e+01	1.14e+01	1.22e+01	1.21e+01	1.09e+01	3.54e+00	3.21e+00	1.45e+00	1.41e+01	1.38e+01	1.38e+01	1.33e+01	1.05e+01	1.03e+01
chr8	21134642	21135598	ENSMUSG00000074444	0.4316	+	Defa30	protein_coding	1.84e-05	3.36e-03	1.90780	1.14e+01	2.08e+00	1.33e+01	7.80e+00	1.17e+01	1.18e+01	1.06e+01	2.47e+00	2.60e+00	1.17e+00	1.38e+01	1.31e+01	1.31e+01	1.02e+01	6.69e+00	6.50e+00
chr12	31265234	31329644	ENSMUSG00000002900	0.4581	+	Lamb1	protein_coding	1.93e-05	3.47e-03	1.79552	8.11e+00	2.54e-02	9.95e+00	8.85e-02	8.46e+00	7.60e+00	8.29e+00	3.13e-02	1.72e-02	2.78e-02	1.00e+01	9.73e+00	1.01e+01	9.35e-02	7.57e-02	9.63e-02
chr14	70583296	70599835	ENSMUSG00000022095	0.5158	-	Fam160b2	protein_coding	1.95e-05	3.47e-03	-2.11930	9.11e+00	1.95e-01	7.02e+00	4.47e-02	8.44e+00	9.17e+00	9.72e+00	1.15e-01	1.91e-01	2.80e-01	7.30e+00	7.36e+00	6.39e+00	5.23e-02	5.43e-02	2.76e-02
chr13	8885501	8892451	ENSMUSG00000058258	0.4074	+	Idi1	protein_coding	2.15e-05	3.79e-03	-1.47579	9.64e+00	1.82e-01	7.66e+00	6.55e-02	9.50e+00	9.89e+00	9.54e+00	1.64e-01	2.15e-01	1.68e-01	5.61e+00	8.62e+00	8.74e+00	1.09e-02	8.89e-02	9.66e-02
chr15	82221744	82224339	ENSMUSG00000068105	0.5331	-	Tnfrsf13c	protein_coding	2.31e-05	4.03e-03	-2.22563	8.62e+00	1.51e-01	6.36e+00	3.21e-02	8.63e+00	8.40e+00	8.83e+00	1.51e-01	1.29e-01	1.74e-01	6.75e+00	6.46e+00	5.86e+00	4.10e-02	3.34e-02	2.19e-02
chr6	83512905	83536265	ENSMUSG00000059430	0.4577	-	Actg2	protein_coding	2.56e-05	4.43e-03	2.11834	5.33e+00	1.27e-02	7.80e+00	5.61e-02	6.71e+00	4.70e+00	4.58e+00	2.61e-02	6.28e-03	5.77e-03	7.98e+00	7.57e+00	7.85e+00	6.30e-02	4.75e-02	5.77e-02
chr11	32296489	32297298	ENSMUSG00000069917	0.5691	+	Hba-a2	protein_coding	2.61e-05	4.44e-03	2.33510	5.08e+00	2.63e-02	7.51e+00	1.36e-01	5.21e+00	4.32e+00	5.70e+00	2.68e-02	1.41e-02	3.79e-02	7.61e+00	7.34e+00	7.59e+00	1.44e-01	1.20e-01	1.43e-01
chr11	102194432	102230166	ENSMUSG00000008855	0.5497	-	Hdac5	protein_coding	2.63e-05	4.44e-03	1.65725	6.18e+00	2.47e-03	7.87e+00	7.86e-03	6.09e+00	5.25e+00	7.20e+00	1.99e-03	1.10e-03	4.33e-03	8.73e+00	7.99e+00	6.88e+00	1.26e-02	7.50e-03	3.47e-03
chr8	21065038	21065996	ENSMUSG00000061845	0.4150	+	Defa35	protein_coding	2.65e-05	4.44e-03	2.04600	8.01e+00	1.95e-01	1.00e+01	8.07e-01	8.35e+00	7.94e+00	7.74e+00	2.43e-01	1.83e-01	1.59e-01	9.79e+00	9.72e+00	1.06e+01	6.59e-01	6.29e-01	1.13e+00
chr10	86692119	86693095	ENSMUSG00000084899	0.4063	-	Gm15344	processed_transcript	2.90e-05	4.81e-03	-1.83760	9.25e+00	4.99e-01	7.03e+00	1.39e-01	9.40e+00	8.76e+00	9.58e+00	5.39e-01	3.46e-01	6.12e-01	5.43e+00	8.32e+00	7.35e+00	3.35e-02	2.54e-01	1.29e-01
chr1	85793441	85851576	ENSMUSG00000036707	0.4152	+	Cab39	protein_coding	3.07e-05	5.04e-03	-1.66121	1.04e+01	1.80e-01	8.68e+00	5.68e-02	1.01e+01	1.04e+01	1.06e+01	1.53e-01	1.77e-01	2.09e-01	8.40e+00	8.58e+00	9.08e+00	4.56e-02	5.17e-02	7.31e-02
chr2	132904389	132945906	ENSMUSG00000027356	0.4276	-	Fermt1	protein_coding	3.53e-05	5.73e-03	1.83045	7.86e+00	3.94e-02	9.72e+00	1.41e-01	7.60e+00	7.65e+00	8.33e+00	3.19e-02	3.31e-02	5.31e-02	9.53e+00	9.66e+00	9.97e+00	1.22e-01	1.34e-01	1.65e-01
chr7	119442537	119459285	ENSMUSG00000030954	0.4352	-	Gp2	protein_coding	3.57e-05	5.74e-03	-3.52925	6.16e+00	5.59e-02	2.25e+00	4.23e-03	7.30e+00	5.58e+00	5.58e+00	1.05e-01	3.14e-02	3.14e-02	3.17e+00	3.58e+00	0.00e+00	5.34e-03	7.34e-03	0.00e+00
chr3	132881745	132950291	ENSMUSG00000040998	0.4297	-	Npnt	protein_coding	3.74e-05	5.96e-03	3.09954	3.43e+00	2.05e-03	6.58e+00	1.91e-02	4.17e+00	2.81e+00	3.32e+00	3.27e-03	1.16e-03	1.73e-03	6.07e+00	6.58e+00	7.10e+00	1.27e-02	1.83e-02	2.62e-02
chr17	36029773	36032855	ENSMUSG00000067212	0.5414	-	H2-T23	protein_coding	4.07e-05	6.42e-03	-1.40743	1.02e+01	4.17e-01	7.85e+00	1.57e-01	1.01e+01	1.06e+01	1.01e+01	3.66e-01	5.16e-01	3.68e-01	4.75e+00	9.46e+00	9.34e+00	8.89e-03	2.40e-01	2.22e-01
chr5	35652023	35679782	ENSMUSG00000029096	0.5294	-	Htra3	protein_coding	4.16e-05	6.50e-03	3.86899	2.45e+00	4.51e-04	6.09e+00	7.81e-03	3.17e+00	1.58e+00	2.58e+00	7.21e-04	1.80e-04	4.51e-04	5.25e+00	5.55e+00	7.48e+00	3.33e-03	4.15e-03	1.60e-02
chr11	76406952	76416292	ENSMUSG00000020843	0.4669	+	Timm22	protein_coding	4.28e-05	6.63e-03	1.79459	9.42e+00	1.22e-01	1.12e+01	4.24e-01	9.25e+00	9.32e+00	9.69e+00	1.07e-01	1.13e-01	1.46e-01	1.10e+01	1.11e+01	1.15e+01	3.71e-01	3.98e-01	5.03e-01
chr6	135137522	135198022	ENSMUSG00000042770	0.4675	-	Hebp1	protein_coding	5.06e-05	7.76e-03	-1.95287	7.32e+00	3.34e-02	5.39e+00	8.48e-03	8.09e+00	6.30e+00	7.57e+00	5.05e-02	1.45e-02	3.51e-02	4.64e+00	5.29e+00	6.25e+00	4.46e-03	7.06e-03	1.39e-02
chr16	20668313	20692884	ENSMUSG00000045983	0.4855	+	Eif4g1	protein_coding	5.14e-05	7.82e-03	1.81066	1.08e+01	1.04e-01	1.27e+01	3.66e-01	1.04e+01	1.05e+01	1.16e+01	6.96e-02	7.88e-02	1.64e-01	1.28e+01	1.22e+01	1.31e+01	3.85e-01	2.50e-01	4.62e-01
chr16	78953008	79091097	ENSMUSG00000022857	0.3659	-	Tmprss15	protein_coding	5.36e-05	8.07e-03	4.28540	6.67e-01	4.89e-04	4.23e+00	1.86e-02	0.00e+00	0.00e+00	2.00e+00	0.00e+00	0.00e+00	1.47e-03	1.00e+00	5.93e+00	5.75e+00	4.89e-04	2.93e-02	2.59e-02
chr17	75435905	75529043	ENSMUSG00000071042	0.4183	+	Rasgrp3	protein_coding	5.44e-05	8.11e-03	-1.58797	8.32e+00	9.25e-02	6.60e+00	3.06e-02	8.32e+00	8.18e+00	8.45e+00	9.23e-02	8.39e-02	1.01e-01	5.86e+00	6.55e+00	7.38e+00	1.65e-02	2.70e-02	4.82e-02
chr17	72918305	72941942	ENSMUSG00000024063	0.4696	+	Lbh	protein_coding	5.81e-05	8.46e-03	-1.55788	1.07e+01	3.75e-01	9.29e+00	1.27e-01	1.17e+01	1.05e+01	9.83e+00	6.65e-01	2.79e-01	1.81e-01	9.19e+00	8.96e+00	9.70e+00	1.16e-01	9.93e-02	1.66e-01
chr10	117287796	117292868	ENSMUSG00000069515	0.4609	-	Lyz1	protein_coding	5.81e-05	8.46e-03	1.80989	1.08e+01	9.40e-01	1.27e+01	3.30e+00	1.14e+01	1.10e+01	1.01e+01	1.30e+00	9.75e-01	5.47e-01	1.27e+01	1.27e+01	1.27e+01	3.36e+00	3.27e+00	3.26e+00
chr15	86057695	86137634	ENSMUSG00000035900	0.5263	+	Gramd4	protein_coding	5.82e-05	8.46e-03	-1.21518	9.51e+00	5.01e-02	7.79e+00	2.15e-02	9.56e+00	9.58e+00	9.40e+00	5.16e-02	5.22e-02	4.63e-02	5.86e+00	8.41e+00	9.10e+00	3.91e-03	2.32e-02	3.75e-02
chr10	128720141	128744056	ENSMUSG00000025357	0.4638	-	Dgka	protein_coding	5.92e-05	8.52e-03	-1.80498	7.61e+00	1.31e-01	5.81e+00	3.71e-02	7.43e+00	8.15e+00	7.25e+00	1.11e-01	1.84e-01	9.83e-02	5.58e+00	5.52e+00	6.32e+00	3.06e-02	2.93e-02	5.14e-02
chr8	21201561	21202539	ENSMUSG00000079116	0.4188	+	Gm15293	protein_coding	6.23e-05	8.89e-03	2.06197	7.18e+00	1.11e-01	9.24e+00	4.64e-01	7.52e+00	7.38e+00	6.64e+00	1.36e-01	1.22e-01	7.35e-02	9.11e+00	8.83e+00	9.77e+00	4.09e-01	3.37e-01	6.47e-01
chr8	21162277	21163249	ENSMUSG00000074443	0.4378	+	Defa22	protein_coding	6.35e-05	8.98e-03	2.12055	1.22e+01	3.79e+00	1.44e+01	1.65e+01	1.27e+01	1.24e+01	1.15e+01	5.06e+00	4.14e+00	2.16e+00	1.46e+01	1.40e+01	1.46e+01	1.84e+01	1.20e+01	1.90e+01
chr10	80583654	80590341	ENSMUSG00000003346	0.5779	-	Abhd17a	protein_coding	6.43e-05	9.01e-03	1.69646	7.45e+00	5.88e-02	9.13e+00	1.91e-01	7.17e+00	7.43e+00	7.75e+00	4.78e-02	5.71e-02	7.15e-02	8.82e+00	9.58e+00	8.98e+00	1.51e-01	2.55e-01	1.69e-01
chr1	185284726	185329396	ENSMUSG00000026618	0.4541	-	Iars2	protein_coding	6.52e-05	9.06e-03	-1.43244	8.37e+00	4.37e-02	6.90e+00	1.61e-02	8.54e+00	9.15e+00	7.43e+00	4.38e-02	6.70e-02	2.02e-02	5.75e+00	7.37e+00	7.59e+00	6.26e-03	1.94e-02	2.27e-02
chr17	39846958	39848788	ENSMUSG00000098178	0.6019	+	Gm42418	lincRNA	7.29e-05	1.01e-02	1.96321	6.41e+00	7.31e-02	8.28e+00	2.87e-01	6.69e+00	5.52e+00	7.01e+00	8.13e-02	3.59e-02	1.02e-01	7.11e+00	9.07e+00	8.67e+00	1.09e-01	4.28e-01	3.25e-01
chr6	120463247	120487559	ENSMUSG00000002897	0.4953	+	Il17ra	protein_coding	7.41e-05	1.01e-02	-1.80049	1.01e+01	1.43e-01	8.25e+00	4.09e-02	9.76e+00	1.03e+01	1.02e+01	1.14e-01	1.62e-01	1.52e-01	8.65e+00	7.99e+00	8.11e+00	5.30e-02	3.34e-02	3.63e-02
chr10	87858265	87937042	ENSMUSG00000020053	0.4103	+	Igf1	protein_coding	8.48e-05	1.14e-02	2.36305	4.75e+00	2.84e-03	6.94e+00	1.50e-02	4.95e+00	4.25e+00	5.04e+00	3.19e-03	1.92e-03	3.41e-03	7.69e+00	5.75e+00	7.38e+00	2.18e-02	5.64e-03	1.77e-02
chr4	129461581	129488498	ENSMUSG00000040859	0.4788	+	Bsdc1	protein_coding	8.48e-05	1.14e-02	-1.39199	9.07e+00	6.15e-02	7.08e+00	2.34e-02	9.08e+00	8.67e+00	9.47e+00	6.04e-02	4.53e-02	7.88e-02	4.75e+00	8.14e+00	8.33e+00	2.90e-03	3.15e-02	3.57e-02
chr8	24584136	24597009	ENSMUSG00000031551	0.4376	-	Ido1	protein_coding	8.68e-05	1.16e-02	-1.72247	6.62e+00	7.89e-02	4.35e+00	2.35e-02	6.94e+00	7.66e+00	5.25e+00	8.03e-02	1.32e-01	2.43e-02	1.58e+00	5.61e+00	5.86e+00	1.32e-03	3.16e-02	3.75e-02
chr8	33652523	33698163	ENSMUSG00000031584	0.4579	+	Gsr	protein_coding	9.69e-05	1.28e-02	-1.27014	1.00e+01	2.22e-01	8.50e+00	9.21e-02	9.86e+00	9.98e+00	1.02e+01	2.00e-01	2.18e-01	2.49e-01	7.33e+00	8.72e+00	9.45e+00	3.46e-02	9.11e-02	1.51e-01
chr11	76902159	76916587	ENSMUSG00000020839	0.4327	+	Tmigd1	protein_coding	1.01e-04	1.32e-02	-1.60537	1.09e+01	6.34e-01	9.32e+00	2.08e-01	1.10e+01	1.12e+01	1.04e+01	6.86e-01	7.81e-01	4.36e-01	9.37e+00	9.13e+00	9.44e+00	2.16e-01	1.83e-01	2.26e-01
chrX	57736547	57738555	ENSMUSG00000080710	0.4032	-	Gm8107	processed_pseudogene	1.02e-04	1.32e-02	3.00000	8.62e-01	7.97e-04	3.34e+00	1.20e-02	1.00e+00	0.00e+00	1.58e+00	7.97e-04	0.00e+00	1.59e-03	4.70e+00	1.00e+00	4.32e+00	1.99e-02	7.97e-04	1.52e-02
chr7	25897620	25926624	ENSMUSG00000030483	0.4536	+	Cyp2b10	protein_coding	1.02e-04	1.32e-02	1.93630	5.98e+00	2.17e-02	7.86e+00	8.42e-02	6.27e+00	5.83e+00	5.83e+00	2.64e-02	1.94e-02	1.94e-02	7.61e+00	8.48e+00	7.48e+00	6.76e-02	1.23e-01	6.14e-02
chr6	84571414	84593908	ENSMUSG00000063415	0.5464	-	Cyp26b1	protein_coding	1.09e-04	1.40e-02	1.63497	5.94e+00	1.51e-02	7.31e+00	4.74e-02	5.81e+00	5.64e+00	6.38e+00	1.34e-02	1.19e-02	2.00e-02	7.91e+00	8.17e+00	5.86e+00	5.82e-02	7.01e-02	1.39e-02
chr11	3517523	3540612	ENSMUSG00000020439	0.5434	-	Smtn	protein_coding	1.11e-04	1.41e-02	1.81983	5.74e+00	9.15e-03	7.67e+00	3.27e-02	6.66e+00	4.95e+00	5.61e+00	1.54e-02	4.63e-03	7.40e-03	7.60e+00	8.23e+00	7.17e+00	2.98e-02	4.63e-02	2.21e-02
chr6	125223933	125231860	ENSMUSG00000038213	0.4941	-	Tapbpl	protein_coding	1.13e-04	1.43e-02	-1.60920	1.11e+01	1.13e+00	9.51e+00	3.69e-01	1.10e+01	1.13e+01	1.11e+01	1.06e+00	1.24e+00	1.08e+00	9.52e+00	9.32e+00	9.70e+00	3.68e-01	3.21e-01	4.19e-01
chr11	97159714	97187881	ENSMUSG00000001440	0.4411	-	Kpnb1	protein_coding	1.16e-04	1.45e-02	-1.76448	9.82e+00	1.66e-01	8.04e+00	4.88e-02	9.85e+00	1.01e+01	9.54e+00	1.68e-01	1.95e-01	1.36e-01	8.30e+00	8.15e+00	7.68e+00	5.74e-02	5.19e-02	3.73e-02
chr1	164061982	164084181	ENSMUSG00000026581	0.4106	+	Sell	protein_coding	1.25e-04	1.55e-02	-1.67754	7.42e+00	2.33e-02	5.63e+00	7.19e-03	8.09e+00	7.28e+00	6.89e+00	3.49e-02	1.98e-02	1.51e-02	4.75e+00	5.49e+00	6.63e+00	3.34e-03	5.65e-03	1.26e-02
chr18	74939322	74961263	ENSMUSG00000053846	0.4758	-	Lipg	protein_coding	1.32e-04	1.63e-02	-3.74147	5.14e+00	1.07e-02	1.11e+00	5.13e-04	5.36e+00	5.21e+00	4.86e+00	1.23e-02	1.11e-02	8.62e-03	2.32e+00	1.00e+00	0.00e+00	1.23e-03	3.08e-04	0.00e+00
chr11	32283511	32284465	ENSMUSG00000069919	0.5717	+	Hba-a1	protein_coding	1.33e-04	1.63e-02	1.82543	5.36e+00	3.34e-02	7.22e+00	1.20e-01	5.73e+00	4.39e+00	5.95e+00	3.92e-02	1.51e-02	4.59e-02	7.91e+00	7.23e+00	6.51e+00	1.81e-01	1.12e-01	6.78e-02
chr17	84705247	84790789	ENSMUSG00000024120	0.4284	-	Lrpprc	protein_coding	1.39e-04	1.68e-02	-1.91047	1.21e+01	4.06e-01	1.01e+01	1.08e-01	1.14e+01	1.24e+01	1.24e+01	2.37e-01	5.03e-01	4.79e-01	1.09e+01	9.79e+00	9.66e+00	1.71e-01	7.98e-02	7.31e-02
chr4	58435255	58553898	ENSMUSG00000038668	0.4240	-	Lpar1	protein_coding	1.41e-04	1.69e-02	-1.56749	9.82e+00	1.93e-01	8.24e+00	6.50e-02	9.88e+00	9.89e+00	9.67e+00	2.02e-01	2.03e-01	1.75e-01	8.07e+00	8.26e+00	8.41e+00	5.71e-02	6.52e-02	7.25e-02
chrX	106027276	106124926	ENSMUSG00000033792	0.3980	+	Atp7a	protein_coding	1.42e-04	1.69e-02	1.87774	6.03e+00	1.61e-02	7.92e+00	5.99e-02	6.02e+00	5.64e+00	6.41e+00	1.57e-02	1.20e-02	2.06e-02	7.94e+00	7.64e+00	8.18e+00	5.99e-02	4.86e-02	7.12e-02
chr2	98666547	98667301	ENSMUSG00000075014	0.3563	-	Gm10800	protein_coding	1.43e-04	1.69e-02	-2.58496	2.63e+00	1.04e-02	7.74e-01	1.06e-03	5.09e+00	2.81e+00	0.00e+00	2.63e-02	4.78e-03	0.00e+00	0.00e+00	0.00e+00	2.32e+00	0.00e+00	0.00e+00	3.19e-03

Download the DEG result list for ColVICreTnfR1_vs_ColVICreLtbR.
Download the whole result list for ColVICreTnfR1_vs_ColVICreLtbR.

References

Anders, S., and Huber, W. (2010). Differential expression analysis for sequence count data. Genome Biol 11, R106.
Planet, E., Attolini, C.S., Reina, O., Flores, O., and Rossell, D. (2012). htSeqTools: high-throughput sequencing quality control, processing and visualization in R. Bioinformatics 28, 589-590.
Tarazona, S., Garcia-Alcalde, F., Dopazo, J., Ferrer, A., and Conesa, A. (2011). Differential expression in RNA-seq: a matter of depth. Genome Res 21, 2213-2223.
Risso, D., Schwartz, K., Sherlock, G., and Dudoit, S. (2011). GC-content normalization for RNA-Seq data. BMC Bioinformatics 12, 480.
Benjamini, Y., and Hochberg, Y. (1995). Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. Journal of the Royal Statistical Society Series B (Methodological) 57, 289-300.