samplename filename condition paired stranded TU1 /data/images/proton/run339/www/GK3R99_TU1.bam TU single yes TU2 /data/images/proton/run339/www/GK3R100_TU2.bam TU single yes TU3 /data/images/proton/run339/www/GK3R101_TU3.bam TU single yes TH1 /data/images/proton/run339/www/GK3R102_TH1.bam TH single yes TH2 /data/images/proton/run339/www/GK3R103_TH2.bam TH single yes TH3 /data/images/proton/run339/www/GK3R104_TH3.bam TH single yes TR1 /data/images/proton/run339/www/GK3R105_TR1.bam TR single yes TR2 /data/images/proton/run339/www/GK3R106_TR2.bam TR single yes TR3 /data/images/proton/run339/www/GK3R107_TR3.bam TR single yes WU1 /data/images/proton/run339/www/GK3R108_WU1.bam WU single yes WU2 /data/images/proton/run339/www/GK3R109_WU2.bam WU single yes WU3 /data/images/proton/run339/www/GK3R110_WU3.bam WU single yes