cd ./cuffdiff_T_vs_U_delG1+U2; awk -f /data/results/tools/rnaseq/get-biotypes-for-isoforms1.awk isoform_exp.diff > isoform_exp.diff.csv;libreoffice --headless --convert-to xlsx:"Calc MS Excel 2007 XML" isoform_exp.diff.csv ; ln -s gene_exp.diff gene_exp.diff.csv; libreoffice --headless --convert-to xlsx:"Calc MS Excel 2007 XML" gene_exp.diff.csv ; Rscript /data/images/proton/cummerbund-report2.r Tcondition U http://genomics-lab.fleming.gr/fleming/GKlab/run296 mm10 ; cd ..
cd ./cuffdiff_G_vs_U; awk -f /data/results/tools/rnaseq/get-biotypes-for-isoforms1.awk isoform_exp.diff > isoform_exp.diff.csv;libreoffice --headless --convert-to xlsx:"Calc MS Excel 2007 XML" isoform_exp.diff.csv ; ln -s gene_exp.diff gene_exp.diff.csv; libreoffice --headless --convert-to xlsx:"Calc MS Excel 2007 XML" gene_exp.diff.csv ; Rscript /data/images/proton/cummerbund-report2.r Gcondition U http://genomics-lab.fleming.gr/fleming/GKlab/run296 mm10 ; cd ..
cd ./cuffdiff_G_vs_U_delG1+U2; awk -f /data/results/tools/rnaseq/get-biotypes-for-isoforms1.awk isoform_exp.diff > isoform_exp.diff.csv;libreoffice --headless --convert-to xlsx:"Calc MS Excel 2007 XML" isoform_exp.diff.csv ; ln -s gene_exp.diff gene_exp.diff.csv; libreoffice --headless --convert-to xlsx:"Calc MS Excel 2007 XML" gene_exp.diff.csv ; Rscript /data/images/proton/cummerbund-report2.r Gcondition U http://genomics-lab.fleming.gr/fleming/GKlab/run296 mm10 ; cd ..
cd ./cuffdiff_T_vs_U; awk -f /data/results/tools/rnaseq/get-biotypes-for-isoforms1.awk isoform_exp.diff > isoform_exp.diff.csv;libreoffice --headless --convert-to xlsx:"Calc MS Excel 2007 XML" isoform_exp.diff.csv ; ln -s gene_exp.diff gene_exp.diff.csv; libreoffice --headless --convert-to xlsx:"Calc MS Excel 2007 XML" gene_exp.diff.csv ; Rscript /data/images/proton/cummerbund-report2.r Tcondition U http://genomics-lab.fleming.gr/fleming/GKlab/run296 mm10 ; cd ..
cd ./cuffdiff_G_vs_U_G1swapU2; awk -f /data/results/tools/rnaseq/get-biotypes-for-isoforms1.awk isoform_exp.diff > isoform_exp.diff.csv;libreoffice --headless --convert-to xlsx:"Calc MS Excel 2007 XML" isoform_exp.diff.csv ; ln -s gene_exp.diff gene_exp.diff.csv; libreoffice --headless --convert-to xlsx:"Calc MS Excel 2007 XML" gene_exp.diff.csv ; Rscript /data/images/proton/cummerbund-report2.r Gcondition U http://genomics-lab.fleming.gr/fleming/GKlab/run296 mm10 ; cd ..
cd ./cuffdiff_T_vs_U_G1swapU2; awk -f /data/results/tools/rnaseq/get-biotypes-for-isoforms1.awk isoform_exp.diff > isoform_exp.diff.csv;libreoffice --headless --convert-to xlsx:"Calc MS Excel 2007 XML" isoform_exp.diff.csv ; ln -s gene_exp.diff gene_exp.diff.csv; libreoffice --headless --convert-to xlsx:"Calc MS Excel 2007 XML" gene_exp.diff.csv ; Rscript /data/images/proton/cummerbund-report2.r Tcondition U http://genomics-lab.fleming.gr/fleming/GKlab/run296 mm10 ; cd ..