[14:58:00] Loading reference annotation.
[14:58:03] Inspecting maps and determining fragment length distributions.
[15:00:09] Modeling fragment count overdispersion.
[15:01:45] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 3016201.47
>	Raw Map Mass: 3014081.54
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3016201.47
>	Raw Map Mass: 3102529.17
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3016201.47
>	Raw Map Mass: 2916783.29
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3016201.47
>	Raw Map Mass: 2613320.57
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3016201.47
>	Raw Map Mass: 3600921.49
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[15:02:54] Calculating preliminary abundance estimates
[15:02:54] Testing for differential expression and regulation in locus.
Processed 64104 loci.                       
Performed 41111 isoform-level transcription difference tests
Performed 37116 tss-level transcription difference tests
Performed 29540 gene-level transcription difference tests
Performed 0 CDS-level transcription difference tests
Performed 0 splicing tests
Performed 0 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info