[14:01:35] Loading reference annotation.
[14:01:38] Inspecting maps and determining fragment length distributions.
[14:04:12] Modeling fragment count overdispersion.
[14:05:48] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 3472331.45
>	Raw Map Mass: 3014081.54
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3472331.45
>	Raw Map Mass: 3102529.17
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3472331.45
>	Raw Map Mass: 2916783.29
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3472331.45
>	Raw Map Mass: 2613320.57
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3472331.45
>	Raw Map Mass: 7051543.22
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3472331.45
>	Raw Map Mass: 3600921.49
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[14:07:25] Calculating preliminary abundance estimates
[14:07:25] Testing for differential expression and regulation in locus.
Processed 64104 loci.                       
Performed 41566 isoform-level transcription difference tests
Performed 37594 tss-level transcription difference tests
Performed 29945 gene-level transcription difference tests
Performed 0 CDS-level transcription difference tests
Performed 3261 splicing tests
Performed 5301 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info