[17:25:44] Loading reference annotation.
[17:25:47] Inspecting maps and determining fragment length distributions.
[17:28:43] Modeling fragment count overdispersion.
[17:30:32] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 2869703.28
>	Raw Map Mass: 2712183.27
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 2869703.28
>	Raw Map Mass: 3532927.62
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 2869703.28
>	Raw Map Mass: 3382401.46
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 2869703.28
>	Raw Map Mass: 2258176.39
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 2869703.28
>	Raw Map Mass: 2615979.39
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 2869703.28
>	Raw Map Mass: 7065151.66
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 2869703.28
>	Raw Map Mass: 3603680.40
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 2869703.28
>	Raw Map Mass: 1008097.15
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[17:32:22] Calculating preliminary abundance estimates
[17:32:22] Testing for differential expression and regulation in locus.
Processed 64258 loci.                       
Performed 39807 isoform-level transcription difference tests
Performed 35836 tss-level transcription difference tests
Performed 28357 gene-level transcription difference tests
Performed 0 CDS-level transcription difference tests
Performed 3281 splicing tests
Performed 5262 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info