[19:43:32] Loading reference annotation.
[19:43:36] Inspecting maps and determining fragment length distributions.
[19:46:25] Modeling fragment count overdispersion.
[19:48:01] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 3575545.26
>	Raw Map Mass: 2710757.31
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3575545.26
>	Raw Map Mass: 3527666.39
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3575545.26
>	Raw Map Mass: 3373436.22
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3575545.26
>	Raw Map Mass: 2613320.57
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3575545.26
>	Raw Map Mass: 7051543.22
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3575545.26
>	Raw Map Mass: 3600921.49
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[19:49:39] Calculating preliminary abundance estimates
[19:49:39] Testing for differential expression and regulation in locus.
Processed 64104 loci.                       
Performed 41810 isoform-level transcription difference tests
Performed 37713 tss-level transcription difference tests
Performed 29887 gene-level transcription difference tests
Performed 0 CDS-level transcription difference tests
Performed 3399 splicing tests
Performed 5410 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info