Cufflinks report, contrast Gcondition_vs_U

The samples have the following names, conditions, replicate number and number of reads:

sample_name    condition_replicateID    n_reads 
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GK3R7-G1       Gcondition_0             4941242 
GK3R8-G2       Gcondition_1             5007997 
GK3R9-G3       Gcondition_2             10300128
GK3R7r-G1      Gcondition_3             3160407 
GK3R4-U1       U_0                      3970351 
GK3R5-U2       U_1                      5103078 
GK3R6-U3       U_2                      3767739 
GK3R5r-U2      U_3                      1663880 

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Normalized UCSC genome browser tracks

Tracks normalized to the smallest library
GK3R5r-U2 with 1663880 reads are at:

http://genomics-lab.fleming.gr/cgi-bin/hgTracks?db=mm10&hubUrl=http://genomics-lab.fleming.gr/fleming/GKlab/run296/hub.txt

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Differentially expressed genes (DEGs)

A speadsheet with differential expression information for the contrast Gcondition_vs_U for all known gense and novel genes identified by cufflinks are at:

http://genomics-lab.fleming.gr/fleming/GKlab/run296/cuffdiff_Gcondition_vs_U/gene_exp.diff.xlsx


The number of known and novel DEG up to q-value 0.05 is 0

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Differentially expressed isoforms

A speadsheet with differential expression information for the contrast Gcondition_vs_U for all known isoforms and novel isoforms found by cufflinks including biotype information is at:

http://genomics-lab.fleming.gr/fleming/GKlab/run296/cuffdiff_Gcondition_vs_U/isoform_exp.diff.xlsx