[13:58:32] Loading reference annotation.
[13:58:35] Inspecting maps and determining fragment length distributions.
[14:01:03] Modeling fragment count overdispersion.
[14:02:34] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 3570890.63
>	Raw Map Mass: 7051543.22
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3570890.63
>	Raw Map Mass: 3527666.39
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3570890.63
>	Raw Map Mass: 3373436.22
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3570890.63
>	Raw Map Mass: 3014081.54
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3570890.63
>	Raw Map Mass: 3102529.17
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3570890.63
>	Raw Map Mass: 2916783.29
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[14:04:05] Calculating preliminary abundance estimates
[14:04:05] Testing for differential expression and regulation in locus.
Processed 64104 loci.                       
Performed 39919 isoform-level transcription difference tests
Performed 36014 tss-level transcription difference tests
Performed 28469 gene-level transcription difference tests
Performed 0 CDS-level transcription difference tests
Performed 3215 splicing tests
Performed 5190 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info