samplename filename condition paired stranded GKR20 /data/images/proton/run209/tophat_001/sort_uniq.bam TZEROHOURS single yes GKR26 /data/images/proton/run200/tophat_007/sort_uniq.bam TZEROHOURS single yes GKR19 /data/images/proton/run211/tophat_008/sort_uniq.bam TSEVENDAYS single yes GKR31 /data/images/proton/run207/tophat_012/sort_uniq.bam TSEVENDAYS single yes