[19:53:49] Loading reference annotation.
[19:53:51] Inspecting maps and determining fragment length distributions.
[20:03:12] Modeling fragment count overdispersion.
[20:04:36] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 26797114.26
>	Raw Map Mass: 33498012.30
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 26797114.26
>	Raw Map Mass: 37825204.75
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 26797114.26
>	Raw Map Mass: 14892128.45
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 26797114.26
>	Raw Map Mass: 39651872.30
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 26797114.26
>	Raw Map Mass: 37070180.54
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 26797114.26
>	Raw Map Mass: 13637588.36
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[20:05:59] Calculating preliminary abundance estimates
[20:05:59] Testing for differential expression and regulation in locus.
Processed 21117 loci.                       
Performed 16868 isoform-level transcription difference tests
Performed 14157 tss-level transcription difference tests
Performed 13053 gene-level transcription difference tests
Performed 14690 CDS-level transcription difference tests
Performed 1961 splicing tests
Performed 948 promoter preference tests
Performing 1699 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info