[16:36:04] Loading reference annotation.
[16:36:06] Inspecting maps and determining fragment length distributions.
[16:45:40] Modeling fragment count overdispersion.
[16:47:03] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 25325487.14
>	Raw Map Mass: 33498012.30
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 25325487.14
>	Raw Map Mass: 37825204.75
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 25325487.14
>	Raw Map Mass: 14892128.45
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 25325487.14
>	Raw Map Mass: 32019108.89
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 25325487.14
>	Raw Map Mass: 30205493.81
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 25325487.14
>	Raw Map Mass: 14661399.45
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[16:48:28] Calculating preliminary abundance estimates
[16:48:28] Testing for differential expression and regulation in locus.
Processed 21117 loci.                       
Performed 16699 isoform-level transcription difference tests
Performed 14012 tss-level transcription difference tests
Performed 12932 gene-level transcription difference tests
Performed 14560 CDS-level transcription difference tests
Performed 1959 splicing tests
Performed 932 promoter preference tests
Performing 1680 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info