[22:19:29] Loading reference annotation.
[22:19:30] Inspecting maps and determining fragment length distributions.
[22:29:05] Modeling fragment count overdispersion.
[22:30:28] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 29474771.44
>	Raw Map Mass: 33498012.30
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 29474771.44
>	Raw Map Mass: 37825204.75
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 29474771.44
>	Raw Map Mass: 14892128.45
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 29474771.44
>	Raw Map Mass: 29458173.71
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 29474771.44
>	Raw Map Mass: 42053543.85
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 29474771.44
>	Raw Map Mass: 28456758.83
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[22:31:51] Calculating preliminary abundance estimates
[22:31:51] Testing for differential expression and regulation in locus.
Processed 21117 loci.                       
Performed 17116 isoform-level transcription difference tests
Performed 14338 tss-level transcription difference tests
Performed 13210 gene-level transcription difference tests
Performed 14881 CDS-level transcription difference tests
Performed 2013 splicing tests
Performed 963 promoter preference tests
Performing 1722 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info