[21:28:35] Loading reference annotation.
[21:28:37] Inspecting maps and determining fragment length distributions.
[21:38:15] Modeling fragment count overdispersion.
[21:39:38] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 30306887.64
>	Raw Map Mass: 33498012.30
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 30306887.64
>	Raw Map Mass: 37825204.75
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 30306887.64
>	Raw Map Mass: 14892128.45
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 30306887.64
>	Raw Map Mass: 34372316.79
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 30306887.64
>	Raw Map Mass: 33613242.68
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 30306887.64
>	Raw Map Mass: 35451193.89
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[21:41:01] Calculating preliminary abundance estimates
[21:41:01] Testing for differential expression and regulation in locus.
Processed 21117 loci.                       
Performed 17027 isoform-level transcription difference tests
Performed 14265 tss-level transcription difference tests
Performed 13139 gene-level transcription difference tests
Performed 14786 CDS-level transcription difference tests
Performed 2016 splicing tests
Performed 958 promoter preference tests
Performing 1727 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info