[20:42:17] Loading reference annotation.
[20:42:19] Inspecting maps and determining fragment length distributions.
[20:50:23] Modeling fragment count overdispersion.
[20:51:47] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 26570770.79
>	Raw Map Mass: 33498012.30
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 26570770.79
>	Raw Map Mass: 37825204.75
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 26570770.79
>	Raw Map Mass: 14892128.45
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 26570770.79
>	Raw Map Mass: 33923728.66
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 26570770.79
>	Raw Map Mass: 32527417.52
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 26570770.79
>	Raw Map Mass: 17327931.85
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[20:53:10] Calculating preliminary abundance estimates
[20:53:10] Testing for differential expression and regulation in locus.
Processed 21117 loci.                       
Performed 16816 isoform-level transcription difference tests
Performed 14116 tss-level transcription difference tests
Performed 13020 gene-level transcription difference tests
Performed 14645 CDS-level transcription difference tests
Performed 1972 splicing tests
Performed 938 promoter preference tests
Performing 1698 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info