[16:23:22] Loading reference annotation.
[16:23:26] Inspecting maps and determining fragment length distributions.
[16:40:30] Modeling fragment count overdispersion.
[16:42:56] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 31066664.34
>	Raw Map Mass: 31664973.88
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31066664.34
>	Raw Map Mass: 34961245.37
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31066664.34
>	Raw Map Mass: 33120695.26
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31066664.34
>	Raw Map Mass: 28227436.41
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31066664.34
>	Raw Map Mass: 26603647.57
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31066664.34
>	Raw Map Mass: 33367884.11
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[16:45:22] Calculating preliminary abundance estimates
[16:45:22] Testing for differential expression and regulation in locus.
Processed 21117 loci.                       
Performed 17492 isoform-level transcription difference tests
Performed 14632 tss-level transcription difference tests
Performed 13473 gene-level transcription difference tests
Performed 15106 CDS-level transcription difference tests
Performed 2092 splicing tests
Performed 1002 promoter preference tests
Performing 1794 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info