[14:54:36] Loading reference annotation.
[14:54:40] Inspecting maps and determining fragment length distributions.
[15:14:08] Modeling fragment count overdispersion.
[15:16:33] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 36737643.10
>	Raw Map Mass: 42798133.10
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 36737643.10
>	Raw Map Mass: 37929919.73
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 36737643.10
>	Raw Map Mass: 47940866.41
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 36737643.10
>	Raw Map Mass: 27190646.16
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 36737643.10
>	Raw Map Mass: 36943525.19
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 36737643.10
>	Raw Map Mass: 31817706.21
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[15:19:00] Calculating preliminary abundance estimates
[15:19:00] Testing for differential expression and regulation in locus.
Processed 21117 loci.                       
Performed 17523 isoform-level transcription difference tests
Performed 14635 tss-level transcription difference tests
Performed 13457 gene-level transcription difference tests
Performed 15068 CDS-level transcription difference tests
Performed 2081 splicing tests
Performed 1014 promoter preference tests
Performing 1775 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info