Dear Vasso,

the analysis of your 3UTRseq experiment has finished.


The samples and the number of reads obtained are:
VK3R16_UAPC1  2702333
VK3R17_UAPC2  2674399
VK3R18_UAPC3  3107384
VK3R19_GAPC1  2609953
VK3R20_GAPC2  2872550
VK3R21_GAPC3  3512007
VK3R22_TAPC1  3044120
VK3R23_TAPC2  3265277
VK3R24_TAPC3  3953280

At 
http://genomics-lab.fleming.gr/cgi-bin/hgTracks?db=mm10&hubUrl=http://genomics-lab.fleming.gr/fleming/GKlab/Kolliaraki/run433/hub.txt
within Fleming: http://filia/cgi-bin/hgTracks?db=mm10&hubUrl=http://filia/fleming/GKlab/Kolliaraki/run433/hub.txt
you will find tracks for all samples integrated in our UCSC genome browser mirror.
These tracks are sampled to smallest library (VK3R19_GAPC1  with 2609953 reads).

At
http://genomics-lab.fleming.gr/fleming/GKlab/Kolliaraki/run433/metaseqr_run433
you will find the metaseqR [1] differential gene expression analysis using
the contrasts
	"APCGFP_vs_APCunsort",
	"APCTOM_vs_APCunsort",
	"APCGFP_vs_APCTOM",
at
http://genomics-lab.fleming.gr/fleming/GKlab/Kolliaraki/run433/metaseqr_run433-2a
for	"APCGFP_vs_GIH",
at
http://genomics-lab.fleming.gr/fleming/GKlab/Kolliaraki/run433/metaseqr_run433-2b
for	"APCTOM_vs_TI",
at
http://genomics-lab.fleming.gr/fleming/GKlab/Kolliaraki/run433/metaseqr_run433-2c
for	"APCunsort_vs_UI",
at
http://genomics-lab.fleming.gr/fleming/GKlab/Kolliaraki/run433/metaseqr_run433-3a
for	"APCGFP_vs_GFP",
at
http://genomics-lab.fleming.gr/fleming/GKlab/Kolliaraki/run433/metaseqr_run433-3b
for	"APCTOM_vs_TOM",
at
http://genomics-lab.fleming.gr/fleming/GKlab/Kolliaraki/run433/metaseqr_run433-3c
for 	"APCunsort_vs_Unsort".

(note the used naming convention: in A_vs_B, A is always the reference).
In the "Results" section, there are links to download the diff. expr. results
under "DEG table", "Download the whole result list".

With best regards,
Martin Reczko

[1] Moulos P and Hatzis P “Systematic integration of RNA-Seq statistical
algorithms for accurate detection of differential gene expression
patterns.” Nucl. Acids Res. (2014)
doi: 10.1093/nar/gku1273
http://nar.oxfordjournals.org/content/early/2014/12/01/nar.gku1273.abstract.