Dear Vasso,

the analysis of your 3RNAseq experiment has finished.
The samples and the number of reads obtained are:

VK3R1_ColVI-unst1  5495249
VK3R2_ColVI-unst2  7483179
VK3R3_ColVI-unst3  4794461
VK3R4_ColVI-APCst1 5593562
VK3R5_ColVI-APCst2 6129352
VK3R6_ColVI-APCst3 5660793

At
http://genomics-lab.fleming.gr/cgi-bin/hgTracks?db=mm10&hubUrl=http://genomics-lab.fleming.gr/fleming/GKlab/Kolliaraki/run412/hub.txt
you will find tracks for the samples, normalized to the smallest library,
VK3R3_ColVI-unst3 with 4794461 reads.

At
http://genomics-lab.fleming.gr/fleming/GKlab/Kolliaraki/run412/metaseqr_quantseq_run412/
you will find the metaseqR [1] differential gene expression analysis using
the contrast
unst_vs_APCst
(note the used naming convention: in A_vs_B, A is always the reference).
In the "Results" section, there are links to download the diff. expr. results
under "DEG table", "Download the whole result list".

With best regards,
Martin Reczko

[1] Moulos P and Hatzis P “Systematic integration of RNA-Seq statistical
algorithms for accurate detection of differential gene expression
patterns.” Nucl. Acids Res. (2014)
doi: 10.1093/nar/gku1273
http://nar.oxfordjournals.org/content/early/2014/12/01/nar.gku1273.abstract.