#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
#Sampling to smallest library containing6479496 reads
ln -s . mm10
echo ES3R1_C.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig-addingChr1.sh ES3R1_C.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.659393
echo ES3R2_M.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig-addingChr1.sh ES3R2_M.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.836149
echo ES3R3_C2.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig-addingChr1.sh ES3R3_C2.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 1
echo ES3R4_2.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig-addingChr1.sh ES3R4_2.bam /data/results/reference/dme/Drosophila_melanogaster/Ensembl/BDGP6/Sequence/WholeGenomeFasta/genome.fa.fai 0.945105