Dear Dr. Skoulakis,

the analysis of your RNAseq experiment has finished.
The samples and the number of reads obtained are:
ES3R1_C   9826457
ES3R2_M   7749211
ES3R3_C2  6479496
ES3R4_2   6855847

At 
http://genomics-lab.fleming.gr/cgi-bin/hgTracks?db=dm3&hubUrl=http://genomics-lab.fleming.gr/fleming/ESlab/run430/hub.txt
(within Fleming:
http://filia/cgi-bin/hgTracks?db=dm3&hubUrl=http://genomics-lab.fleming.gr/fleming/ESlab/run430/hub.txt
)
you will find tracks for all samples integrated in our UCSC genome browser mirror.
These tracks are sampled to smallest library (ES3R3_C2 with 6479496 reads).

At
http://genomics-lab.fleming.gr/fleming/ESlab/run430/metaseqr_ESlab_run430
(within Fleming:
http://filia/fleming/ESlab/run430/metaseqr_ESlab_run430
)
you will find the metaseqR [1] differential gene expression analysis using
the contrast
LiveInv_vs_FIXED, which is
(note the used naming convention: in A_vs_B, A is always the reference).

In the "Results" section, there are links to download the diff. expr. results
under "DEG table", "Download the whole result list".

With best regards,
Martin Reczko

[1] Moulos P and Hatzis P “Systematic integration of RNA-Seq statistical
algorithms for accurate detection of differential gene expression
patterns.” Nucl. Acids Res. (2014)
doi: 10.1093/nar/gku1273
http://nar.oxfordjournals.org/content/early/2014/12/01/nar.gku1273.abstract.




Dear Pantelis,

for the ESlab, the samples are:
ES3R1_C	
ES3R2_M	
ES3R3_C2
ES3R4_2

What is the contrast?

BW
Martin

#@
C is control, non_C is mutant