#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
#Sampling to smallest library containing37701209 reads
ln -s . mm10
echo DKR4a-WT1M.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh DKR4a-WT1M.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 1
echo DKR20-HURRIPC57-2M.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh DKR20-HURRIPC57-2M.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 1
echo DKR4b-WT1M.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh DKR4b-WT1M.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 1
echo DKR4c-WT1M.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh DKR4c-WT1M.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 1