Contents
SummaryFiguresResultsReferences
|
Summary
Analysis summary
Summary:
The gene counts table was normalized for inherent systematic or experimental biases (e.g. sequencing depth, gene length, GC content bias etc.) using the Bioconductor package DESeq after removing genes that had zero counts over all the RNA-Seq samples (662 genes). The output of the normalization algorithm was a table with normalized counts, which can be used for differential expression analysis with statistical algorithms developed specifically for count data. Prior to the statistical testing procedure, the gene read counts were filtered for possible artifacts that could affect the subsequent statistical testing procedures. Genes presenting any of the following were excluded from further analysis: i) genes with length less than 500 (0 genes), ii) genes whose average reads per 100 bp was less than the 25th quantile of the total normalized distribution of average reads per 100bp (0 genes with cutoff value 0.06738 average reads per 100 bp), iii) genes with read counts below the median read counts of the total normalized count distribution (1835 genes with cutoff value 21 normalized read counts). The total number of genes excluded due to the application of gene filters was 844. The total (unified) number of genes excluded due to the application of all filters was 2499. The resulting gene counts table was subjected to differential expression analysis for the contrasts C versus K, C versus CL4, K versus KL4, CL4 versus KL4 using the Bioconductor package DESeq. The final numbers of differentially expressed genes were (per contrast): for the contrast C versus K, 71 (22) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 2 (0) were up-regulated, 69 (22) were down-regulated and 0 (0) were not differentially expressed according to an absolute fold change cutoff value of 1 in log2 scale, for the contrast C versus CL4, 546 (256) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 325 (177) were up-regulated, 221 (79) were down-regulated and 0 (0) were not differentially expressed according to an absolute fold change cutoff value of 1 in log2 scale, for the contrast K versus KL4, 526 (248) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 333 (196) were up-regulated, 193 (52) were down-regulated and 0 (0) were not differentially expressed according to an absolute fold change cutoff value of 1 in log2 scale, for the contrast CL4 versus KL4, 20 (2) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 4 (0) were up-regulated, 16 (2) were down-regulated and 0 (0) were not differentially expressed according to an absolute fold change cutoff value of 1 in log2 scale. Literature references for all the algorithms used can be found at the end of this report.
Read counts file: imported custom data frame
Conditions: C, K, CL4, KL4
Samples included: DK3R1r_C1, DK3R2r_C2, DK3R3r_C3, DK3R4b_K23, DK3R5_K2, DK3R6_K3, DK3R7_C1L4, DK3R8_C2L4, DK3R9r_C3L4, DK3R10b_K23L4, DK3R11_K2L4, DK3R12_K3L4
Samples excluded:
none
Requested contrasts: C_vs_K, C_vs_CL4, K_vs_KL4, CL4_vs_KL4
Library sizes:
not available
Annotation: embedded
Organism:
Annotation source: Ensembl genomes
Count type: utr
Exon filters:
none applied
Gene filters:
length, avg.reads, expression, biotype - avg.reads
- average.per.bp: 100
- quantile: 0.25
- expression
- median: TRUE
- mean: FALSE
- quantile: NA
- known: NA
- custom: NA
- biotype
- pseudogene: FALSE
- snRNA: FALSE
- protein_coding: FALSE
- antisense: FALSE
- miRNA: FALSE
- snoRNA: FALSE
- lincRNA: FALSE
- processed_transcript: FALSE
- misc_RNA: FALSE
- rRNA: TRUE
- sense_intronic: FALSE
- sense_overlapping: FALSE
- polymorphic_pseudogene: FALSE
- IG_C_gene: FALSE
- IG_J_gene: FALSE
- IG_D_gene: FALSE
- IG_LV_gene: FALSE
- IG_V_gene: FALSE
- IG_V_pseudogene: TRUE
- TR_V_gene: FALSE
- TR_V_pseudogene: TRUE
- three_prime_overlapping_ncrna: FALSE
Filter application: after normalization
Normalization algorithm: DESeq
Normalization arguments:
locfunc - [[list(locfunc = function (x, na.rm = FALSE)
standardGeneric("median"))locfunc
Statistical algorithm(s): DESeq
Statistical arguments for DESeq: method, sharingMode, fitType - method: blind
- sharingMode: fit-only
- fitType: local
Meta-analysis method: no meta-analysis, reported p-values from the first supplied statistical algorithm
Multiple testing correction: Benjamini-Hochberg FDR
p-value threshold: 0.05
Logarithmic tranformation offset: 1
Analysis preset: not available
Quality control plots: multidimensional scaling, biotype detection, biotype counts, sample and biotype saturation, filtered biotypes, correlation heatmap and correlogram, pairwise scatterplots between samples, boxplots, GC-content bias, transcript length bias, DEG biotype detection, volcano plot, DEG heatmap
Figure format: png, pdf
Output directory: /data/images/proton2/run347/wwwDKlab/metaseqr_quantseq_run347merged343GE3AREsite-geneset
Output data: Annotation, p-value, Adjusted p-value (FDR), Fold change, Statistics, Read counts
Output scale(s): log2 scale, Reads per Gene Model
Output values: Normalized values
Output statistics: Mean
Total run time: 03 minutes 11 seconds
Filtered genes
Number of filtered genes: 2499 which is the union of
- Filtered because of zero reads: 662
-
Filtered because of exon filters: 0
-
Filtered because of gene filters: 1837
which is the union of
- length: 0 genes with filter cutoff value 500
- avg.reads: 843 genes with filter cutoff value 0.0673775
- expression: 1835 genes further decomposed to (filter name, filtered genes, filter cutoff):
- median: 1835 genes with filter cutoff value 21
- biotype: 0 genes with filter cutoff value rRNA, IG_V_pseudogene, TR_V_pseudogene
Differentially expressed genes
Number of differentially expressed genes per contrast:
- C_vs_K: 71 (22) statistically significant genes of which 2 (0) up regulated, 69 (22) down regulated and 0 (0) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log2 scale.
- C_vs_CL4: 546 (256) statistically significant genes of which 325 (177) up regulated, 221 (79) down regulated and 0 (0) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log2 scale.
- K_vs_KL4: 526 (248) statistically significant genes of which 333 (196) up regulated, 193 (52) down regulated and 0 (0) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log2 scale.
- CL4_vs_KL4: 20 (2) statistically significant genes of which 4 (0) up regulated, 16 (2) down regulated and 0 (0) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log2 scale.
Run log[ 2017-05-26 16:30:32 ] INFO 2017-05-26 16:30:32: Data processing started... [ 2017-05-26 16:30:32 ] INFO Read counts file: imported custom data frame [ 2017-05-26 16:30:32 ] INFO Conditions: C, K, CL4, KL4 [ 2017-05-26 16:30:32 ] INFO Samples to include: DK3R1r_C1, DK3R2r_C2, DK3R3r_C3, DK3R4b_K23, DK3R5_K2, DK3R6_K3, DK3R7_C1L4, DK3R8_C2L4, DK3R9r_C3L4, DK3R10b_K23L4, DK3R11_K2L4, DK3R12_K3L4 [ 2017-05-26 16:30:32 ] INFO Samples to exclude: none [ 2017-05-26 16:30:32 ] INFO Requested contrasts: C_vs_K, C_vs_CL4, K_vs_KL4, CL4_vs_KL4 [ 2017-05-26 16:30:32 ] INFO Annotation: embedded [ 2017-05-26 16:30:32 ] INFO Organism: custom [ 2017-05-26 16:30:32 ] INFO Reference source: ensembl [ 2017-05-26 16:30:32 ] INFO Count type: utr [ 2017-05-26 16:30:32 ] INFO Exon filters: none applied [ 2017-05-26 16:30:32 ] INFO Gene filters: length, avg.reads, expression, biotype [ 2017-05-26 16:30:32 ] INFO length: [ 2017-05-26 16:30:32 ] INFO length: 500 [ 2017-05-26 16:30:32 ] INFO avg.reads: [ 2017-05-26 16:30:32 ] INFO average.per.bp: 100 [ 2017-05-26 16:30:32 ] INFO quantile: 0.25 [ 2017-05-26 16:30:32 ] INFO expression: [ 2017-05-26 16:30:32 ] INFO median: TRUE [ 2017-05-26 16:30:32 ] INFO mean: FALSE [ 2017-05-26 16:30:32 ] INFO quantile: NA [ 2017-05-26 16:30:32 ] INFO known: NA [ 2017-05-26 16:30:32 ] INFO custom: NA [ 2017-05-26 16:30:32 ] INFO biotype: [ 2017-05-26 16:30:32 ] INFO pseudogene: FALSE [ 2017-05-26 16:30:32 ] INFO snRNA: FALSE [ 2017-05-26 16:30:32 ] INFO protein_coding: FALSE [ 2017-05-26 16:30:32 ] INFO antisense: FALSE [ 2017-05-26 16:30:32 ] INFO miRNA: FALSE [ 2017-05-26 16:30:32 ] INFO snoRNA: FALSE [ 2017-05-26 16:30:32 ] INFO lincRNA: FALSE [ 2017-05-26 16:30:32 ] INFO processed_transcript: FALSE [ 2017-05-26 16:30:32 ] INFO misc_RNA: FALSE [ 2017-05-26 16:30:32 ] INFO rRNA: TRUE [ 2017-05-26 16:30:32 ] INFO sense_intronic: FALSE [ 2017-05-26 16:30:32 ] INFO sense_overlapping: FALSE [ 2017-05-26 16:30:32 ] INFO polymorphic_pseudogene: FALSE [ 2017-05-26 16:30:32 ] INFO IG_C_gene: FALSE [ 2017-05-26 16:30:32 ] INFO IG_J_gene: FALSE [ 2017-05-26 16:30:32 ] INFO IG_D_gene: FALSE [ 2017-05-26 16:30:32 ] INFO IG_LV_gene: FALSE [ 2017-05-26 16:30:32 ] INFO IG_V_gene: FALSE [ 2017-05-26 16:30:32 ] INFO IG_V_pseudogene: TRUE [ 2017-05-26 16:30:32 ] INFO TR_V_gene: FALSE [ 2017-05-26 16:30:32 ] INFO TR_V_pseudogene: TRUE [ 2017-05-26 16:30:32 ] INFO three_prime_overlapping_ncrna: FALSE [ 2017-05-26 16:30:32 ] INFO Filter application: postnorm [ 2017-05-26 16:30:32 ] INFO Normalization algorithm: deseq [ 2017-05-26 16:30:32 ] INFO Normalization arguments: [ 2017-05-26 16:30:32 ] INFO locfunc: [ 2017-05-26 16:30:32 ] INFO [[ [ 2017-05-26 16:30:32 ] INFO list(locfunc = function (x, na.rm = FALSE) standardGeneric("median")) [ 2017-05-26 16:30:32 ] INFO locfunc [ 2017-05-26 16:30:32 ] INFO Statistical algorithm: deseq [ 2017-05-26 16:30:32 ] INFO Statistical arguments: [ 2017-05-26 16:30:32 ] INFO deseq: blind, fit-only, local [ 2017-05-26 16:30:32 ] INFO Meta-analysis method: none [ 2017-05-26 16:30:32 ] INFO Multiple testing correction: BH [ 2017-05-26 16:30:32 ] INFO p-value threshold: 0.05 [ 2017-05-26 16:30:32 ] INFO Logarithmic transformation offset: 1 [ 2017-05-26 16:30:32 ] INFO Quality control plots: mds, biodetection, countsbio, saturation, readnoise, filtered, correl, pairwise, boxplot, gcbias, lengthbias, biodist, volcano, deheatmap [ 2017-05-26 16:30:32 ] INFO Figure format: png, pdf [ 2017-05-26 16:30:32 ] INFO Output directory: /data/images/proton2/run347/wwwDKlab/metaseqr_quantseq_run347merged343GE3AREsite-geneset [ 2017-05-26 16:30:32 ] INFO Output data: annotation, p.value, adj.p.value, fold.change, stats, counts, flags [ 2017-05-26 16:30:32 ] INFO Output scale(s): log2, rpgm [ 2017-05-26 16:30:32 ] INFO Output values: normalized [ 2017-05-26 16:30:32 ] INFO Output statistics: mean [ 2017-05-26 16:30:32 ] INFO Reading custom external gene annotation for from /data/results/tools/rnaseq/metaseqr/mm10_more_than_2AREs/gene_data_mm10.txt.gz... [ 2017-05-26 16:30:33 ] INFO Checking chromosomes in transcript counts and gene annotation... [ 2017-05-26 16:30:33 ] INFO Processing transcripts... [ 2017-05-26 16:30:33 ] INFO Separating transcripts (UTR regions) per gene for DK3R1r_C1... [ 2017-05-26 16:30:37 ] INFO Separating transcripts (UTR regions) per gene for DK3R2r_C2... [ 2017-05-26 16:30:41 ] INFO Separating transcripts (UTR regions) per gene for DK3R3r_C3... [ 2017-05-26 16:30:45 ] INFO Separating transcripts (UTR regions) per gene for DK3R4b_K23... [ 2017-05-26 16:30:48 ] INFO Separating transcripts (UTR regions) per gene for DK3R5_K2... [ 2017-05-26 16:30:52 ] INFO Separating transcripts (UTR regions) per gene for DK3R6_K3... [ 2017-05-26 16:30:56 ] INFO Separating transcripts (UTR regions) per gene for DK3R7_C1L4... [ 2017-05-26 16:31:00 ] INFO Separating transcripts (UTR regions) per gene for DK3R8_C2L4... [ 2017-05-26 16:31:04 ] INFO Separating transcripts (UTR regions) per gene for DK3R9r_C3L4... [ 2017-05-26 16:31:08 ] INFO Separating transcripts (UTR regions) per gene for DK3R10b_K23L4... [ 2017-05-26 16:31:12 ] INFO Separating transcripts (UTR regions) per gene for DK3R11_K2L4... [ 2017-05-26 16:31:16 ] INFO Separating transcripts (UTR regions) per gene for DK3R12_K3L4... [ 2017-05-26 16:31:20 ] INFO Saving gene model to /data/images/proton2/run347/wwwDKlab/metaseqr_quantseq_run347merged343GE3AREsite-geneset/data/gene_model.RData [ 2017-05-26 16:31:21 ] INFO Summarizing count data... [ 2017-05-26 16:32:15 ] INFO Removing genes with zero counts in all samples... [ 2017-05-26 16:32:15 ] INFO Normalizing with: deseq [ 2017-05-26 16:32:15 ] INFO Applying gene filter length... [ 2017-05-26 16:32:15 ] INFO Threshold below which ignored: 500 [ 2017-05-26 16:32:15 ] INFO Applying gene filter avg.reads... [ 2017-05-26 16:32:15 ] INFO Threshold below which ignored: 0.0673775015850436 [ 2017-05-26 16:32:15 ] INFO Applying gene filter expression... [ 2017-05-26 16:32:16 ] INFO Threshold below which ignored: 21 [ 2017-05-26 16:32:16 ] INFO Applying gene filter biotype... [ 2017-05-26 16:32:16 ] INFO Biotypes ignored: rRNA, IG_V_pseudogene, TR_V_pseudogene [ 2017-05-26 16:32:16 ] INFO 2499 genes filtered out [ 2017-05-26 16:32:16 ] INFO 3353 genes remain after filtering [ 2017-05-26 16:32:16 ] INFO Running statistical tests with: deseq [ 2017-05-26 16:32:16 ] INFO Contrast: C_vs_K [ 2017-05-26 16:32:19 ] INFO Contrast: C_vs_CL4 [ 2017-05-26 16:32:23 ] INFO Contrast: K_vs_KL4 [ 2017-05-26 16:32:26 ] INFO Contrast: CL4_vs_KL4 [ 2017-05-26 16:32:30 ] INFO Contrast C_vs_K: found 71 genes [ 2017-05-26 16:32:30 ] INFO Contrast C_vs_CL4: found 546 genes [ 2017-05-26 16:32:30 ] INFO Contrast K_vs_KL4: found 526 genes [ 2017-05-26 16:32:30 ] INFO Contrast CL4_vs_KL4: found 20 genes [ 2017-05-26 16:32:30 ] INFO Building output files... [ 2017-05-26 16:32:30 ] INFO Contrast: C_vs_K [ 2017-05-26 16:32:30 ] INFO Adding non-filtered data... [ 2017-05-26 16:32:30 ] INFO binding annotation... [ 2017-05-26 16:32:30 ] INFO binding p-values... [ 2017-05-26 16:32:30 ] INFO binding FDRs... [ 2017-05-26 16:32:30 ] INFO binding log2 normalized fold changes... [ 2017-05-26 16:32:30 ] INFO binding normalized mean counts... [ 2017-05-26 16:32:31 ] INFO binding normalized mean counts... [ 2017-05-26 16:32:31 ] INFO binding all normalized counts for C... [ 2017-05-26 16:32:31 ] INFO binding all normalized counts for K... [ 2017-05-26 16:32:31 ] INFO binding filtering flags... [ 2017-05-26 16:32:31 ] INFO Writing output... [ 2017-05-26 16:32:31 ] INFO Adding filtered data... [ 2017-05-26 16:32:31 ] INFO binding annotation... [ 2017-05-26 16:32:31 ] INFO binding p-values... [ 2017-05-26 16:32:31 ] INFO binding FDRs... [ 2017-05-26 16:32:31 ] INFO binding log2 normalized fold changes... [ 2017-05-26 16:32:31 ] INFO binding normalized mean counts... [ 2017-05-26 16:32:31 ] INFO binding normalized mean counts... [ 2017-05-26 16:32:31 ] INFO binding all normalized counts for C... [ 2017-05-26 16:32:31 ] INFO binding all normalized counts for K... [ 2017-05-26 16:32:31 ] INFO binding filtering flags... [ 2017-05-26 16:32:31 ] INFO Writing output... [ 2017-05-26 16:32:32 ] INFO Contrast: C_vs_CL4 [ 2017-05-26 16:32:32 ] INFO Adding non-filtered data... [ 2017-05-26 16:32:32 ] INFO binding annotation... [ 2017-05-26 16:32:32 ] INFO binding p-values... [ 2017-05-26 16:32:32 ] INFO binding FDRs... [ 2017-05-26 16:32:32 ] INFO binding log2 normalized fold changes... [ 2017-05-26 16:32:32 ] INFO binding normalized mean counts... [ 2017-05-26 16:32:32 ] INFO binding normalized mean counts... [ 2017-05-26 16:32:32 ] INFO binding all normalized counts for C... [ 2017-05-26 16:32:32 ] INFO binding all normalized counts for CL4... [ 2017-05-26 16:32:32 ] INFO binding filtering flags... [ 2017-05-26 16:32:33 ] INFO Writing output... [ 2017-05-26 16:32:33 ] INFO Adding filtered data... [ 2017-05-26 16:32:33 ] INFO binding annotation... [ 2017-05-26 16:32:33 ] INFO binding p-values... [ 2017-05-26 16:32:33 ] INFO binding FDRs... [ 2017-05-26 16:32:33 ] INFO binding log2 normalized fold changes... [ 2017-05-26 16:32:33 ] INFO binding normalized mean counts... [ 2017-05-26 16:32:33 ] INFO binding normalized mean counts... [ 2017-05-26 16:32:33 ] INFO binding all normalized counts for C... [ 2017-05-26 16:32:33 ] INFO binding all normalized counts for CL4... [ 2017-05-26 16:32:33 ] INFO binding filtering flags... [ 2017-05-26 16:32:33 ] INFO Writing output... [ 2017-05-26 16:32:33 ] INFO Contrast: K_vs_KL4 [ 2017-05-26 16:32:33 ] INFO Adding non-filtered data... [ 2017-05-26 16:32:33 ] INFO binding annotation... [ 2017-05-26 16:32:33 ] INFO binding p-values... [ 2017-05-26 16:32:33 ] INFO binding FDRs... [ 2017-05-26 16:32:33 ] INFO binding log2 normalized fold changes... [ 2017-05-26 16:32:33 ] INFO binding normalized mean counts... [ 2017-05-26 16:32:34 ] INFO binding normalized mean counts... [ 2017-05-26 16:32:34 ] INFO binding all normalized counts for K... [ 2017-05-26 16:32:34 ] INFO binding all normalized counts for KL4... [ 2017-05-26 16:32:34 ] INFO binding filtering flags... [ 2017-05-26 16:32:34 ] INFO Writing output... [ 2017-05-26 16:32:34 ] INFO Adding filtered data... [ 2017-05-26 16:32:34 ] INFO binding annotation... [ 2017-05-26 16:32:34 ] INFO binding p-values... [ 2017-05-26 16:32:34 ] INFO binding FDRs... [ 2017-05-26 16:32:34 ] INFO binding log2 normalized fold changes... [ 2017-05-26 16:32:34 ] INFO binding normalized mean counts... [ 2017-05-26 16:32:34 ] INFO binding normalized mean counts... [ 2017-05-26 16:32:34 ] INFO binding all normalized counts for K... [ 2017-05-26 16:32:34 ] INFO binding all normalized counts for KL4... [ 2017-05-26 16:32:34 ] INFO binding filtering flags... [ 2017-05-26 16:32:34 ] INFO Writing output... [ 2017-05-26 16:32:35 ] INFO Contrast: CL4_vs_KL4 [ 2017-05-26 16:32:35 ] INFO Adding non-filtered data... [ 2017-05-26 16:32:35 ] INFO binding annotation... [ 2017-05-26 16:32:35 ] INFO binding p-values... [ 2017-05-26 16:32:35 ] INFO binding FDRs... [ 2017-05-26 16:32:35 ] INFO binding log2 normalized fold changes... [ 2017-05-26 16:32:35 ] INFO binding normalized mean counts... [ 2017-05-26 16:32:35 ] INFO binding normalized mean counts... [ 2017-05-26 16:32:35 ] INFO binding all normalized counts for CL4... [ 2017-05-26 16:32:35 ] INFO binding all normalized counts for KL4... [ 2017-05-26 16:32:35 ] INFO binding filtering flags... [ 2017-05-26 16:32:36 ] INFO Writing output... [ 2017-05-26 16:32:36 ] INFO Adding filtered data... [ 2017-05-26 16:32:36 ] INFO binding annotation... [ 2017-05-26 16:32:36 ] INFO binding p-values... [ 2017-05-26 16:32:36 ] INFO binding FDRs... [ 2017-05-26 16:32:36 ] INFO binding log2 normalized fold changes... [ 2017-05-26 16:32:36 ] INFO binding normalized mean counts... [ 2017-05-26 16:32:36 ] INFO binding normalized mean counts... [ 2017-05-26 16:32:36 ] INFO binding all normalized counts for CL4... [ 2017-05-26 16:32:36 ] INFO binding all normalized counts for KL4... [ 2017-05-26 16:32:36 ] INFO binding filtering flags... [ 2017-05-26 16:32:36 ] INFO Writing output... [ 2017-05-26 16:32:36 ] INFO Creating quality control graphs... [ 2017-05-26 16:32:36 ] INFO Plotting in png format... [ 2017-05-26 16:32:36 ] INFO Plotting mds... [ 2017-05-26 16:32:36 ] INFO Plotting biodetection... [ 2017-05-26 16:32:37 ] INFO Plotting countsbio... [ 2017-05-26 16:32:38 ] INFO Plotting saturation... [ 2017-05-26 16:32:41 ] INFO Plotting readnoise... [ 2017-05-26 16:32:41 ] INFO Plotting correl... [ 2017-05-26 16:32:42 ] INFO Plotting pairwise... [ 2017-05-26 16:32:52 ] INFO Plotting boxplot... [ 2017-05-26 16:32:52 ] INFO Plotting gcbias... [ 2017-05-26 16:32:52 ] INFO Plotting lengthbias... [ 2017-05-26 16:32:52 ] INFO Plotting boxplot... [ 2017-05-26 16:32:52 ] INFO Plotting gcbias... [ 2017-05-26 16:32:53 ] INFO Plotting lengthbias... [ 2017-05-26 16:32:53 ] INFO Plotting biodist... [ 2017-05-26 16:32:53 ] INFO Contrast: C_vs_K [ 2017-05-26 16:32:53 ] INFO Contrast: C_vs_CL4 [ 2017-05-26 16:32:53 ] INFO Contrast: K_vs_KL4 [ 2017-05-26 16:32:53 ] INFO Contrast: CL4_vs_KL4 [ 2017-05-26 16:32:54 ] INFO Plotting volcano... [ 2017-05-26 16:32:54 ] INFO Contrast: C_vs_K [ 2017-05-26 16:32:54 ] INFO Contrast: C_vs_CL4 [ 2017-05-26 16:32:54 ] INFO Contrast: K_vs_KL4 [ 2017-05-26 16:32:54 ] INFO Contrast: CL4_vs_KL4 [ 2017-05-26 16:32:54 ] INFO Plotting deheatmap... [ 2017-05-26 16:32:54 ] INFO Contrast: C_vs_K [ 2017-05-26 16:32:59 ] INFO Contrast: C_vs_CL4 [ 2017-05-26 16:33:04 ] INFO Contrast: K_vs_KL4 [ 2017-05-26 16:33:08 ] INFO Contrast: CL4_vs_KL4 [ 2017-05-26 16:33:13 ] INFO Plotting filtered... [ 2017-05-26 16:33:13 ] INFO Plotting in pdf format... [ 2017-05-26 16:33:13 ] INFO Plotting mds... [ 2017-05-26 16:33:13 ] INFO Plotting biodetection... [ 2017-05-26 16:33:13 ] INFO Plotting countsbio... [ 2017-05-26 16:33:14 ] INFO Plotting saturation... [ 2017-05-26 16:33:15 ] INFO Plotting readnoise... [ 2017-05-26 16:33:16 ] INFO Plotting correl... [ 2017-05-26 16:33:16 ] INFO Plotting pairwise... [ 2017-05-26 16:33:22 ] INFO Plotting boxplot... [ 2017-05-26 16:33:22 ] INFO Plotting gcbias... [ 2017-05-26 16:33:22 ] INFO Plotting lengthbias... [ 2017-05-26 16:33:22 ] INFO Plotting boxplot... [ 2017-05-26 16:33:23 ] INFO Plotting gcbias... [ 2017-05-26 16:33:23 ] INFO Plotting lengthbias... [ 2017-05-26 16:33:23 ] INFO Plotting biodist... [ 2017-05-26 16:33:23 ] INFO Contrast: C_vs_K [ 2017-05-26 16:33:23 ] INFO Contrast: C_vs_CL4 [ 2017-05-26 16:33:24 ] INFO Contrast: K_vs_KL4 [ 2017-05-26 16:33:24 ] INFO Contrast: CL4_vs_KL4 [ 2017-05-26 16:33:24 ] INFO Plotting volcano... [ 2017-05-26 16:33:24 ] INFO Contrast: C_vs_K [ 2017-05-26 16:33:24 ] INFO Contrast: C_vs_CL4 [ 2017-05-26 16:33:24 ] INFO Contrast: K_vs_KL4 [ 2017-05-26 16:33:24 ] INFO Contrast: CL4_vs_KL4 [ 2017-05-26 16:33:24 ] INFO Plotting deheatmap... [ 2017-05-26 16:33:24 ] INFO Contrast: C_vs_K [ 2017-05-26 16:33:29 ] INFO Contrast: C_vs_CL4 [ 2017-05-26 16:33:34 ] INFO Contrast: K_vs_KL4 [ 2017-05-26 16:33:39 ] INFO Contrast: CL4_vs_KL4 [ 2017-05-26 16:33:43 ] INFO Plotting filtered... [ 2017-05-26 16:33:43 ] INFO Creating HTML report... [ 2017-05-26 16:33:43 ] INFO Compressing figures...
Multidimensional scaling
Biotype detection
Biotype detection counts
Read and biotype saturation
RNA-Seq reads noise
Correlation plots
Pairwise scatterplots
Boxplots
GC content bias
Gene/transcript length bias
Chromosome and biotype distribution of filtered genes
Volcano plots
DEG heatmaps
Chromosome and biotype distributions of DEGs
Results
DEG table for the contrast C_vs_KThe following table presents the top 10% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast C_vs_K. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right. | chromosome | start | end | gene_id | gc_content | strand | gene_name | biotype | p-value_deseq | FDR_deseq | log2_normalized_fold_change_C_vs_K | log2_normalized_mean_counts_C | rpgm_normalized_mean_counts_C | log2_normalized_mean_counts_K | rpgm_normalized_mean_counts_K | log2_normalized_counts_DK3R1r_C1 | log2_normalized_counts_DK3R2r_C2 | log2_normalized_counts_DK3R3r_C3 | rpgm_normalized_counts_DK3R1r_C1 | rpgm_normalized_counts_DK3R2r_C2 | rpgm_normalized_counts_DK3R3r_C3 | log2_normalized_counts_DK3R4b_K23 | log2_normalized_counts_DK3R5_K2 | log2_normalized_counts_DK3R6_K3 | rpgm_normalized_counts_DK3R4b_K23 | rpgm_normalized_counts_DK3R5_K2 | rpgm_normalized_counts_DK3R6_K3 | LN | AR | MD | MN | QN | KN | CM | BT |
|---|
| chr3 | 107741048 | 107760469 | ENSMUSG00000014599 | 0.5122 | - | Csf1 | protein_coding | 2.20e-11 | 7.39e-08 | -4.42772 | 5.04e+00 | 1.70e-02 | 2.57e+00 | 6.93e-04 | 2.32e+00 | 3.91e+00 | 8.89e+00 | 4.16e-04 | 1.45e-03 | 4.92e-02 | 3.70e+00 | 1.00e+00 | 3.00e+00 | 1.25e-03 | 1.04e-04 | 7.27e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr18 | 52516069 | 52529867 | ENSMUSG00000024529 | 0.4156 | - | Lox | protein_coding | 1.99e-09 | 2.09e-06 | -3.65805 | 8.05e+00 | 3.32e-01 | 6.65e+00 | 2.61e-02 | 5.95e+00 | 6.15e+00 | 1.21e+01 | 1.38e-02 | 1.59e-02 | 9.65e-01 | 7.71e+00 | 6.11e+00 | 6.13e+00 | 4.71e-02 | 1.54e-02 | 1.56e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr16 | 37776873 | 37836514 | ENSMUSG00000022816 | 0.4548 | + | Fstl1 | protein_coding | 2.48e-09 | 2.09e-06 | -3.72850 | 5.58e+00 | 5.45e-02 | 4.59e+00 | 3.99e-03 | 2.58e+00 | 3.91e+00 | 1.03e+01 | 6.58e-04 | 1.84e-03 | 1.61e-01 | 5.93e+00 | 3.32e+00 | 4.52e+00 | 7.89e-03 | 1.18e-03 | 2.89e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 71585520 | 71653200 | ENSMUSG00000026193 | 0.4366 | - | Fn1 | protein_coding | 2.49e-09 | 2.09e-06 | -3.69764 | 6.40e+00 | 2.38e-02 | 4.08e+00 | 1.79e-03 | 4.00e+00 | 4.64e+00 | 1.06e+01 | 6.96e-04 | 1.11e-03 | 6.97e-02 | 6.64e+00 | 1.58e+00 | 4.00e+00 | 4.59e-03 | 9.28e-05 | 6.96e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr3 | 145646976 | 145649981 | ENSMUSG00000028195 | 0.5050 | - | Cyr61 | protein_coding | 7.60e-09 | 5.10e-06 | -3.54467 | 5.87e+00 | 2.36e-01 | 5.17e+00 | 1.97e-02 | 2.81e+00 | 4.39e+00 | 1.04e+01 | 3.09e-03 | 1.03e-02 | 6.93e-01 | 5.67e+00 | 4.25e+00 | 5.58e+00 | 2.57e-02 | 9.26e-03 | 2.42e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr6 | 117168535 | 117181367 | ENSMUSG00000061353 | 0.4986 | + | Cxcl12 | protein_coding | 3.89e-08 | 2.17e-05 | -3.27536 | 6.07e+00 | 2.96e-02 | 4.42e+00 | 2.96e-03 | 5.46e+00 | 3.17e+00 | 9.59e+00 | 4.66e-03 | 8.66e-04 | 8.33e-02 | 4.81e+00 | 2.81e+00 | 5.64e+00 | 2.92e-03 | 6.50e-04 | 5.31e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr13 | 28948919 | 28953713 | ENSMUSG00000076431 | 0.5114 | - | Sox4 | protein_coding | 7.28e-08 | 3.49e-05 | -4.24101 | 4.94e+00 | 3.64e-02 | 2.67e+00 | 1.68e-03 | 3.58e+00 | 2.58e+00 | 8.64e+00 | 2.91e-03 | 1.32e-03 | 1.05e-01 | 3.70e+00 | 2.00e+00 | 2.32e+00 | 3.18e-03 | 7.94e-04 | 1.06e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr17 | 14665500 | 14694262 | ENSMUSG00000023885 | 0.4651 | - | Thbs2 | protein_coding | 1.24e-07 | 5.21e-05 | -4.63048 | 2.77e+00 | 3.25e-02 | 1.58e+00 | 1.02e-03 | 0.00e+00 | 0.00e+00 | 8.32e+00 | 0.00e+00 | 0.00e+00 | 9.76e-02 | 3.17e+00 | 0.00e+00 | 1.58e+00 | 2.45e-03 | 0.00e+00 | 6.12e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Download the DEG result list for C_vs_K.Download the whole result list for C_vs_K.DEG table for the contrast C_vs_CL4The following table presents the top 10% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast C_vs_CL4. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right. | chromosome | start | end | gene_id | gc_content | strand | gene_name | biotype | p-value_deseq | FDR_deseq | log2_normalized_fold_change_C_vs_CL4 | log2_normalized_mean_counts_C | rpgm_normalized_mean_counts_C | log2_normalized_mean_counts_CL4 | rpgm_normalized_mean_counts_CL4 | log2_normalized_counts_DK3R1r_C1 | log2_normalized_counts_DK3R2r_C2 | log2_normalized_counts_DK3R3r_C3 | rpgm_normalized_counts_DK3R1r_C1 | rpgm_normalized_counts_DK3R2r_C2 | rpgm_normalized_counts_DK3R3r_C3 | log2_normalized_counts_DK3R7_C1L4 | log2_normalized_counts_DK3R8_C2L4 | log2_normalized_counts_DK3R9r_C3L4 | rpgm_normalized_counts_DK3R7_C1L4 | rpgm_normalized_counts_DK3R8_C2L4 | rpgm_normalized_counts_DK3R9r_C3L4 | LN | AR | MD | MN | QN | KN | CM | BT |
|---|
| chr18 | 74939322 | 74961263 | ENSMUSG00000053846 | 0.4758 | - | Lipg | protein_coding | 2.52e-24 | 8.46e-21 | 7.98299 | 1.11e+00 | 5.13e-04 | 9.16e+00 | 2.07e-01 | 0.00e+00 | 2.32e+00 | 1.00e+00 | 0.00e+00 | 1.23e-03 | 3.08e-04 | 1.00e+01 | 9.50e+00 | 7.94e+00 | 3.23e-01 | 2.23e-01 | 7.54e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr12 | 26469204 | 26479835 | ENSMUSG00000020638 | 0.4656 | + | Cmpk2 | protein_coding | 1.31e-18 | 2.20e-15 | 6.69584 | 5.36e+00 | 1.40e-02 | 1.21e+01 | 1.48e+00 | 5.86e+00 | 5.09e+00 | 5.13e+00 | 1.93e-02 | 1.11e-02 | 1.15e-02 | 1.19e+01 | 1.21e+01 | 1.23e+01 | 1.31e+00 | 1.44e+00 | 1.70e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr7 | 126589010 | 126594941 | ENSMUSG00000044701 | 0.5005 | - | Il27 | protein_coding | 9.42e-18 | 1.05e-14 | 6.66202 | 1.86e+00 | 2.60e-03 | 8.59e+00 | 3.28e-01 | 2.58e+00 | 3.00e+00 | 0.00e+00 | 3.25e-03 | 4.55e-03 | 0.00e+00 | 7.53e+00 | 8.21e+00 | 1.00e+01 | 1.20e-01 | 1.92e-01 | 6.74e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 34941750 | 34961772 | ENSMUSG00000026875 | 0.4977 | - | Traf1 | protein_coding | 7.72e-17 | 6.47e-14 | 6.07341 | 3.74e+00 | 1.61e-03 | 9.87e+00 | 1.16e-01 | 4.09e+00 | 4.32e+00 | 2.81e+00 | 1.88e-03 | 2.23e-03 | 7.05e-04 | 9.21e+00 | 1.00e+01 | 1.04e+01 | 6.93e-02 | 1.24e-01 | 1.55e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 165055627 | 165072948 | ENSMUSG00000017652 | 0.4963 | + | Cd40 | protein_coding | 2.07e-16 | 1.39e-13 | 6.06513 | 6.06e+00 | 8.04e-03 | 1.20e+01 | 5.46e-01 | 6.04e+00 | 6.32e+00 | 5.81e+00 | 7.88e-03 | 9.58e-03 | 6.67e-03 | 1.11e+01 | 1.22e+01 | 1.27e+01 | 2.75e-01 | 5.80e-01 | 7.84e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 30013114 | 30019981 | ENSMUSG00000025746 | 0.4078 | + | Il6 | protein_coding | 5.14e-16 | 2.87e-13 | 6.36146 | 9.36e-01 | 6.84e-04 | 7.87e+00 | 8.41e-02 | 0.00e+00 | 0.00e+00 | 2.81e+00 | 0.00e+00 | 0.00e+00 | 2.05e-03 | 7.73e+00 | 7.41e+00 | 8.48e+00 | 7.22e-02 | 5.78e-02 | 1.22e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr16 | 37776873 | 37836514 | ENSMUSG00000022816 | 0.4548 | + | Fstl1 | protein_coding | 1.45e-15 | 6.96e-13 | -6.19563 | 5.58e+00 | 5.45e-02 | 1.97e+00 | 6.14e-04 | 2.58e+00 | 3.91e+00 | 1.03e+01 | 6.58e-04 | 1.84e-03 | 1.61e-01 | 3.32e+00 | 2.58e+00 | 0.00e+00 | 1.18e-03 | 6.58e-04 | 0.00e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 92321347 | 92328079 | ENSMUSG00000029417 | 0.4151 | - | Cxcl9 | protein_coding | 2.57e-14 | 1.08e-11 | 5.92184 | 8.62e-01 | 3.36e-04 | 7.13e+00 | 3.24e-02 | 0.00e+00 | 0.00e+00 | 2.58e+00 | 0.00e+00 | 0.00e+00 | 1.01e-03 | 6.94e+00 | 6.32e+00 | 8.14e+00 | 2.46e-02 | 1.59e-02 | 5.67e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 71585520 | 71653200 | ENSMUSG00000026193 | 0.4366 | - | Fn1 | protein_coding | 3.05e-14 | 1.13e-11 | -5.38300 | 6.40e+00 | 2.38e-02 | 3.39e+00 | 5.26e-04 | 4.00e+00 | 4.64e+00 | 1.06e+01 | 6.96e-04 | 1.11e-03 | 6.97e-02 | 2.32e+00 | 4.39e+00 | 3.46e+00 | 1.86e-04 | 9.28e-04 | 4.64e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr18 | 52516069 | 52529867 | ENSMUSG00000024529 | 0.4156 | - | Lox | protein_coding | 7.60e-14 | 2.55e-11 | -5.08976 | 8.05e+00 | 3.32e-01 | 5.41e+00 | 9.52e-03 | 5.95e+00 | 6.15e+00 | 1.21e+01 | 1.38e-02 | 1.59e-02 | 9.65e-01 | 5.36e+00 | 5.67e+00 | 5.21e+00 | 9.07e-03 | 1.13e-02 | 8.16e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 144242296 | 144249242 | ENSMUSG00000026358 | 0.3610 | - | Rgs1 | protein_coding | 5.30e-13 | 1.62e-10 | 5.13100 | 2.78e+00 | 8.18e-04 | 8.10e+00 | 3.26e-02 | 1.58e+00 | 3.17e+00 | 3.58e+00 | 2.34e-04 | 9.35e-04 | 1.29e-03 | 8.51e+00 | 7.86e+00 | 7.93e+00 | 4.25e-02 | 2.70e-02 | 2.84e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 78920787 | 78960254 | ENSMUSG00000020826 | 0.5008 | + | Nos2 | protein_coding | 9.37e-13 | 2.62e-10 | 6.57491 | 0.00e+00 | 0.00e+00 | 6.46e+00 | 3.13e-02 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 5.91e+00 | 6.23e+00 | 7.24e+00 | 1.96e-02 | 2.46e-02 | 4.98e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr17 | 67842713 | 68004120 | ENSMUSG00000024043 | 0.4441 | - | Arhgap28 | protein_coding | 6.39e-12 | 1.65e-09 | 5.03526 | 2.27e+00 | 8.78e-04 | 8.01e+00 | 3.28e-02 | 0.00e+00 | 2.81e+00 | 4.00e+00 | 0.00e+00 | 7.52e-04 | 1.88e-03 | 7.61e+00 | 8.22e+00 | 8.19e+00 | 2.45e-02 | 3.74e-02 | 3.65e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr13 | 42301270 | 42307989 | ENSMUSG00000021367 | 0.4580 | + | Edn1 | protein_coding | 9.78e-12 | 2.34e-09 | 5.70044 | 6.67e-01 | 4.23e-04 | 6.61e+00 | 4.36e-02 | 0.00e+00 | 0.00e+00 | 2.00e+00 | 0.00e+00 | 0.00e+00 | 1.27e-03 | 6.79e+00 | 5.88e+00 | 7.15e+00 | 4.65e-02 | 2.45e-02 | 5.96e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr19 | 34550694 | 34576419 | ENSMUSG00000045932 | 0.4241 | + | Ifit2 | protein_coding | 1.69e-11 | 3.77e-09 | 4.36055 | 6.60e+00 | 2.17e-02 | 1.09e+01 | 4.50e-01 | 6.81e+00 | 6.36e+00 | 6.63e+00 | 2.49e-02 | 1.82e-02 | 2.20e-02 | 1.15e+01 | 1.08e+01 | 1.05e+01 | 6.32e-01 | 4.01e-01 | 3.18e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr6 | 123281789 | 123289870 | ENSMUSG00000030142 | 0.4134 | - | Clec4e | protein_coding | 2.09e-11 | 4.38e-09 | 4.67377 | 3.80e+00 | 2.36e-03 | 8.47e+00 | 6.47e-02 | 3.70e+00 | 3.70e+00 | 4.00e+00 | 2.18e-03 | 2.18e-03 | 2.72e-03 | 8.64e+00 | 8.20e+00 | 8.57e+00 | 7.21e-02 | 5.34e-02 | 6.87e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 83647844 | 83649355 | ENSMUSG00000000982 | 0.4630 | - | Ccl3 | protein_coding | 4.13e-11 | 8.14e-09 | 4.45340 | 7.08e+00 | 8.68e-02 | 1.16e+01 | 1.91e+00 | 7.49e+00 | 7.49e+00 | 6.25e+00 | 1.08e-01 | 1.08e-01 | 4.51e-02 | 1.11e+01 | 1.14e+01 | 1.22e+01 | 1.32e+00 | 1.64e+00 | 2.78e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr8 | 64592542 | 64693054 | ENSMUSG00000037852 | 0.4269 | - | Cpe | protein_coding | 4.38e-11 | 8.17e-09 | -6.80305 | 3.32e+00 | 2.55e-02 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 1.58e+00 | 8.37e+00 | 0.00e+00 | 4.61e-04 | 7.60e-02 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 11705290 | 11734317 | ENSMUSG00000023206 | 0.4426 | + | Il15ra | protein_coding | 5.54e-11 | 9.78e-09 | 4.42545 | 3.54e+00 | 2.03e-03 | 8.19e+00 | 4.68e-02 | 4.58e+00 | 3.46e+00 | 2.58e+00 | 3.68e-03 | 1.60e-03 | 8.00e-04 | 8.32e+00 | 8.22e+00 | 8.03e+00 | 5.11e-02 | 4.77e-02 | 4.18e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr18 | 60376029 | 60392627 | ENSMUSG00000054072 | 0.4020 | + | Iigp1 | protein_coding | 6.75e-11 | 1.13e-08 | 4.53775 | 3.60e+00 | 4.83e-03 | 8.38e+00 | 1.20e-01 | 3.46e+00 | 2.58e+00 | 4.75e+00 | 3.54e-03 | 1.77e-03 | 9.19e-03 | 8.77e+00 | 8.31e+00 | 8.06e+00 | 1.55e-01 | 1.12e-01 | 9.37e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr10 | 86300372 | 86349506 | ENSMUSG00000020044 | 0.4736 | + | Timp3 | protein_coding | 8.12e-11 | 1.27e-08 | -5.57154 | 4.17e+00 | 1.64e-02 | 1.30e+00 | 2.32e-04 | 1.00e+00 | 2.81e+00 | 8.71e+00 | 1.16e-04 | 6.96e-04 | 4.85e-02 | 2.32e+00 | 0.00e+00 | 1.58e+00 | 4.64e-04 | 0.00e+00 | 2.32e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 105115767 | 105139586 | ENSMUSG00000079363 | 0.4090 | - | Gbp4 | protein_coding | 8.33e-11 | 1.27e-08 | 4.38281 | 3.20e+00 | 6.21e-04 | 7.61e+00 | 1.44e-02 | 3.70e+00 | 3.32e+00 | 2.58e+00 | 8.60e-04 | 6.45e-04 | 3.58e-04 | 8.08e+00 | 7.57e+00 | 7.17e+00 | 1.94e-02 | 1.35e-02 | 1.02e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr7 | 141429744 | 141437892 | ENSMUSG00000019082 | 0.5701 | - | Slc25a22 | protein_coding | 2.45e-10 | 3.58e-08 | 4.46359 | 4.12e+00 | 2.63e-03 | 8.72e+00 | 6.08e-02 | 2.81e+00 | 5.09e+00 | 4.46e+00 | 7.89e-04 | 4.34e-03 | 2.76e-03 | 7.95e+00 | 8.71e+00 | 9.50e+00 | 3.24e-02 | 5.50e-02 | 9.51e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr13 | 28948919 | 28953713 | ENSMUSG00000076431 | 0.5114 | - | Sox4 | protein_coding | 2.91e-10 | 3.98e-08 | -5.70044 | 4.94e+00 | 3.64e-02 | 8.62e-01 | 4.41e-04 | 3.58e+00 | 2.58e+00 | 8.64e+00 | 2.91e-03 | 1.32e-03 | 1.05e-01 | 0.00e+00 | 2.58e+00 | 0.00e+00 | 0.00e+00 | 1.32e-03 | 0.00e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 45374321 | 45503282 | ENSMUSG00000026042 | 0.3619 | - | Col5a2 | protein_coding | 2.97e-10 | 3.98e-08 | -5.59163 | 4.21e+00 | 2.12e-02 | 1.19e+00 | 2.95e-04 | 1.58e+00 | 2.32e+00 | 8.73e+00 | 2.95e-04 | 5.90e-04 | 6.27e-02 | 1.00e+00 | 2.58e+00 | 0.00e+00 | 1.48e-04 | 7.38e-04 | 0.00e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr15 | 77078990 | 77307053 | ENSMUSG00000033565 | 0.4337 | - | Rbfox2 | protein_coding | 3.14e-10 | 4.05e-08 | -5.65105 | 5.38e+00 | 2.07e-02 | 1.39e+00 | 2.59e-04 | 4.00e+00 | 3.58e+00 | 8.55e+00 | 2.33e-03 | 1.71e-03 | 5.80e-02 | 1.58e+00 | 1.00e+00 | 1.58e+00 | 3.11e-04 | 1.56e-04 | 3.11e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr3 | 127869058 | 127896324 | ENSMUSG00000050549 | 0.4029 | - | 5730508B09Rik | protein_coding | 5.47e-10 | 6.79e-08 | 4.33945 | 3.90e+00 | 4.39e-03 | 8.15e+00 | 9.49e-02 | 4.00e+00 | 3.91e+00 | 3.81e+00 | 4.70e-03 | 4.39e-03 | 4.08e-03 | 7.91e+00 | 7.69e+00 | 8.86e+00 | 7.49e-02 | 6.46e-02 | 1.45e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 117966079 | 117970047 | ENSMUSG00000053113 | 0.6102 | - | Socs3 | protein_coding | 5.80e-10 | 6.95e-08 | 4.15548 | 5.94e+00 | 1.49e-02 | 1.00e+01 | 2.70e-01 | 5.95e+00 | 6.02e+00 | 5.83e+00 | 1.51e-02 | 1.58e-02 | 1.39e-02 | 9.49e+00 | 1.02e+01 | 1.04e+01 | 1.78e-01 | 2.98e-01 | 3.35e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 21091291 | 21150323 | ENSMUSG00000020134 | 0.3866 | + | Peli1 | protein_coding | 7.20e-10 | 8.32e-08 | 3.98924 | 7.20e+00 | 3.43e-02 | 1.12e+01 | 5.48e-01 | 7.50e+00 | 6.93e+00 | 7.16e+00 | 4.18e-02 | 2.81e-02 | 3.30e-02 | 1.15e+01 | 1.08e+01 | 1.12e+01 | 6.79e-01 | 4.21e-01 | 5.43e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 90903871 | 90905938 | ENSMUSG00000058427 | 0.4507 | + | Cxcl2 | protein_coding | 7.70e-10 | 8.61e-08 | 4.10920 | 4.93e+00 | 1.06e-02 | 9.00e+00 | 1.89e-01 | 5.17e+00 | 5.09e+00 | 4.52e+00 | 1.24e-02 | 1.17e-02 | 7.77e-03 | 9.27e+00 | 8.38e+00 | 9.36e+00 | 2.17e-01 | 1.18e-01 | 2.31e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr17 | 29490812 | 29496111 | ENSMUSG00000024014 | 0.5274 | + | Pim1 | protein_coding | 1.26e-09 | 1.32e-07 | 4.76097 | 9.05e+00 | 2.09e-01 | 1.38e+01 | 5.69e+00 | 8.50e+00 | 9.43e+00 | 9.22e+00 | 1.38e-01 | 2.63e-01 | 2.27e-01 | 1.31e+01 | 1.39e+01 | 1.43e+01 | 3.36e+00 | 5.78e+00 | 7.92e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr17 | 35199381 | 35202007 | ENSMUSG00000024401 | 0.5230 | - | Tnf | protein_coding | 1.26e-09 | 1.32e-07 | 4.98501 | 9.05e+00 | 2.79e-01 | 1.41e+01 | 8.84e+00 | 8.45e+00 | 9.67e+00 | 9.04e+00 | 1.72e-01 | 4.03e-01 | 2.60e-01 | 1.35e+01 | 1.40e+01 | 1.46e+01 | 5.76e+00 | 8.39e+00 | 1.24e+01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr10 | 19000910 | 19015657 | ENSMUSG00000019850 | 0.4554 | - | Tnfaip3 | protein_coding | 1.98e-09 | 2.01e-07 | 4.11085 | 4.46e+00 | 3.36e-03 | 8.62e+00 | 6.05e-02 | 5.21e+00 | 4.46e+00 | 3.70e+00 | 5.27e-03 | 3.07e-03 | 1.76e-03 | 8.29e+00 | 8.29e+00 | 9.27e+00 | 4.56e-02 | 4.55e-02 | 9.04e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr3 | 145646976 | 145649981 | ENSMUSG00000028195 | 0.5050 | - | Cyr61 | protein_coding | 3.14e-09 | 3.09e-07 | -3.95158 | 5.87e+00 | 2.36e-01 | 4.63e+00 | 1.47e-02 | 2.81e+00 | 4.39e+00 | 1.04e+01 | 3.09e-03 | 1.03e-02 | 6.93e-01 | 4.75e+00 | 5.67e+00 | 3.46e+00 | 1.34e-02 | 2.57e-02 | 5.14e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 129364570 | 129371139 | ENSMUSG00000027398 | 0.4534 | - | Il1b | protein_coding | 3.46e-09 | 3.32e-07 | 3.74938 | 6.09e+00 | 2.30e-02 | 9.90e+00 | 3.13e-01 | 5.75e+00 | 6.70e+00 | 5.81e+00 | 1.73e-02 | 3.37e-02 | 1.80e-02 | 1.00e+01 | 9.93e+00 | 9.74e+00 | 3.42e-01 | 3.18e-01 | 2.79e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr17 | 26505590 | 26508519 | ENSMUSG00000024190 | 0.5334 | - | Dusp1 | protein_coding | 3.64e-09 | 3.39e-07 | 4.00504 | 6.46e+00 | 4.05e-02 | 1.03e+01 | 6.57e-01 | 6.60e+00 | 6.13e+00 | 6.66e+00 | 4.40e-02 | 3.17e-02 | 4.59e-02 | 9.72e+00 | 9.97e+00 | 1.13e+01 | 3.86e-01 | 4.61e-01 | 1.13e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 82101845 | 82103400 | ENSMUSG00000035352 | 0.4389 | + | Ccl12 | protein_coding | 5.61e-09 | 5.08e-07 | 3.87299 | 5.69e+00 | 3.57e-02 | 9.53e+00 | 5.32e-01 | 5.83e+00 | 5.64e+00 | 5.58e+00 | 3.94e-02 | 3.45e-02 | 3.31e-02 | 9.32e+00 | 9.30e+00 | 9.97e+00 | 4.48e-01 | 4.43e-01 | 7.05e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr8 | 27138773 | 27174646 | ENSMUSG00000031488 | 0.4754 | - | Rab11fip1 | protein_coding | 6.18e-09 | 5.46e-07 | 3.94017 | 3.56e+00 | 1.29e-03 | 7.66e+00 | 2.12e-02 | 3.00e+00 | 4.52e+00 | 3.17e+00 | 7.30e-04 | 2.29e-03 | 8.34e-04 | 7.38e+00 | 7.85e+00 | 7.75e+00 | 1.73e-02 | 2.40e-02 | 2.24e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 171632403 | 171653035 | ENSMUSG00000038179 | 0.4492 | - | Slamf7 | protein_coding | 6.72e-09 | 5.75e-07 | 3.53420 | 7.22e+00 | 2.77e-02 | 1.07e+01 | 3.23e-01 | 7.59e+00 | 7.52e+00 | 6.55e+00 | 3.42e-02 | 3.24e-02 | 1.66e-02 | 1.13e+01 | 1.08e+01 | 1.01e+01 | 4.45e-01 | 3.25e-01 | 1.99e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr8 | 88647315 | 88688474 | ENSMUSG00000055994 | 0.4864 | + | Nod2 | protein_coding | 6.86e-09 | 5.75e-07 | 4.33703 | 2.39e+00 | 1.06e-03 | 6.94e+00 | 2.53e-02 | 1.58e+00 | 3.58e+00 | 2.00e+00 | 3.99e-04 | 2.19e-03 | 5.98e-04 | 6.34e+00 | 7.17e+00 | 7.31e+00 | 1.60e-02 | 2.85e-02 | 3.15e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr14 | 47153895 | 47189413 | ENSMUSG00000037580 | 0.4495 | - | Gch1 | protein_coding | 9.27e-09 | 7.58e-07 | 3.78839 | 6.29e+00 | 2.68e-02 | 1.01e+01 | 3.75e-01 | 7.09e+00 | 6.15e+00 | 5.64e+00 | 4.28e-02 | 2.22e-02 | 1.55e-02 | 9.56e+00 | 9.99e+00 | 1.08e+01 | 2.39e-01 | 3.22e-01 | 5.63e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr19 | 29367455 | 29388095 | ENSMUSG00000016496 | 0.4295 | + | Cd274 | protein_coding | 1.70e-08 | 1.36e-06 | 3.75135 | 7.90e+00 | 6.25e-02 | 1.17e+01 | 8.45e-01 | 7.38e+00 | 8.08e+00 | 8.24e+00 | 4.22e-02 | 6.86e-02 | 7.67e-02 | 1.15e+01 | 1.17e+01 | 1.19e+01 | 7.54e-01 | 8.26e-01 | 9.54e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 127336159 | 127338376 | ENSMUSG00000027368 | 0.5762 | + | Dusp2 | protein_coding | 2.01e-08 | 1.57e-06 | 4.99141 | 9.88e+00 | 3.64e-01 | 1.51e+01 | 1.16e+01 | 9.42e+00 | 1.10e+01 | 9.20e+00 | 2.21e-01 | 6.81e-01 | 1.90e-01 | 1.47e+01 | 1.53e+01 | 1.53e+01 | 8.75e+00 | 1.34e+01 | 1.26e+01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr3 | 27317028 | 27342427 | ENSMUSG00000039304 | 0.4494 | + | Tnfsf10 | protein_coding | 2.19e-08 | 1.67e-06 | 3.69506 | 4.31e+00 | 2.93e-03 | 8.02e+00 | 3.97e-02 | 4.81e+00 | 3.81e+00 | 4.32e+00 | 4.02e-03 | 1.93e-03 | 2.83e-03 | 8.44e+00 | 7.59e+00 | 8.03e+00 | 5.16e-02 | 2.86e-02 | 3.88e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr4 | 124656807 | 124660655 | ENSMUSG00000090125 | 0.6391 | + | Pou3f1 | protein_coding | 2.46e-08 | 1.83e-06 | 4.99498 | 1.30e+00 | 7.70e-04 | 6.29e+00 | 3.64e-02 | 2.32e+00 | 1.58e+00 | 0.00e+00 | 1.54e-03 | 7.70e-04 | 0.00e+00 | 5.32e+00 | 6.07e+00 | 7.49e+00 | 1.50e-02 | 2.54e-02 | 6.89e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 114922781 | 114934386 | ENSMUSG00000063193 | 0.4817 | - | Cd300lb | protein_coding | 3.01e-08 | 2.19e-06 | -4.43911 | 6.43e+00 | 2.01e-02 | 2.06e+00 | 7.22e-04 | 7.24e+00 | 6.15e+00 | 5.91e+00 | 3.25e-02 | 1.52e-02 | 1.28e-02 | 2.58e+00 | 2.00e+00 | 1.58e+00 | 1.08e-03 | 6.49e-04 | 4.33e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 145784734 | 145887616 | ENSMUSG00000001768 | 0.4527 | + | Rin2 | protein_coding | 4.24e-08 | 2.99e-06 | 3.44225 | 6.29e+00 | 4.43e-03 | 9.74e+00 | 4.87e-02 | 6.55e+00 | 6.30e+00 | 6.02e+00 | 5.25e-03 | 4.41e-03 | 3.62e-03 | 9.96e+00 | 9.61e+00 | 9.66e+00 | 5.61e-02 | 4.42e-02 | 4.56e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 53770014 | 53778374 | ENSMUSG00000018899 | 0.5246 | + | Irf1 | protein_coding | 4.28e-08 | 2.99e-06 | 3.82990 | 9.06e+00 | 6.42e-02 | 1.28e+01 | 9.15e-01 | 8.91e+00 | 9.36e+00 | 8.92e+00 | 5.71e-02 | 7.80e-02 | 5.76e-02 | 1.22e+01 | 1.31e+01 | 1.32e+01 | 5.71e-01 | 1.03e+00 | 1.14e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr6 | 117168535 | 117181367 | ENSMUSG00000061353 | 0.4986 | + | Cxcl12 | protein_coding | 5.82e-08 | 3.98e-06 | -3.34490 | 6.07e+00 | 2.96e-02 | 4.46e+00 | 2.82e-03 | 5.46e+00 | 3.17e+00 | 9.59e+00 | 4.66e-03 | 8.66e-04 | 8.33e-02 | 3.58e+00 | 4.09e+00 | 5.70e+00 | 1.19e-03 | 1.73e-03 | 5.52e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 105214907 | 105293695 | ENSMUSG00000079362 | 0.4146 | - | Gm43302 | protein_coding | 6.77e-08 | 4.54e-06 | 3.69153 | 2.94e+00 | 2.01e-03 | 6.53e+00 | 2.92e-02 | 2.81e+00 | 2.32e+00 | 3.70e+00 | 1.64e-03 | 1.10e-03 | 3.29e-03 | 7.55e+00 | 6.43e+00 | 5.61e+00 | 5.12e-02 | 2.33e-02 | 1.31e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr13 | 69497959 | 69534617 | ENSMUSG00000034575 | 0.4928 | - | Papd7 | protein_coding | 8.09e-08 | 5.32e-06 | 3.60514 | 5.49e+00 | 1.44e-02 | 9.09e+00 | 1.79e-01 | 6.11e+00 | 5.29e+00 | 5.09e+00 | 2.12e-02 | 1.18e-02 | 1.03e-02 | 8.39e+00 | 9.35e+00 | 9.53e+00 | 1.04e-01 | 2.03e-01 | 2.30e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 67607882 | 67623552 | ENSMUSG00000050010 | 0.4424 | + | Shisa3 | protein_coding | 1.23e-07 | 7.91e-06 | 3.39571 | 4.71e+00 | 4.67e-03 | 8.46e+00 | 5.05e-02 | 3.46e+00 | 6.02e+00 | 4.64e+00 | 1.43e-03 | 9.15e-03 | 3.43e-03 | 8.57e+00 | 8.27e+00 | 8.55e+00 | 5.41e-02 | 4.39e-02 | 5.36e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 97989578 | 97996181 | ENSMUSG00000038352 | 0.5117 | - | Arl5c | protein_coding | 2.54e-07 | 1.61e-05 | 3.58643 | 4.73e+00 | 7.15e-03 | 8.07e+00 | 8.89e-02 | 5.13e+00 | 4.81e+00 | 4.25e+00 | 9.24e-03 | 7.33e-03 | 4.89e-03 | 7.11e+00 | 7.85e+00 | 9.27e+00 | 3.72e-02 | 6.22e-02 | 1.67e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr15 | 43020811 | 43170818 | ENSMUSG00000051920 | 0.3829 | - | Rspo2 | protein_coding | 3.43e-07 | 2.13e-05 | -6.13614 | 2.90e+00 | 2.33e-02 | 0.00e+00 | 0.00e+00 | 1.00e+00 | 0.00e+00 | 7.70e+00 | 3.37e-04 | 0.00e+00 | 6.97e-02 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 59541568 | 59566956 | ENSMUSG00000032691 | 0.4597 | + | Nlrp3 | protein_coding | 3.61e-07 | 2.20e-05 | 3.41251 | 5.81e+00 | 2.01e-02 | 9.19e+00 | 2.17e-01 | 6.64e+00 | 6.15e+00 | 4.64e+00 | 3.09e-02 | 2.19e-02 | 7.50e-03 | 8.57e+00 | 8.67e+00 | 1.03e+01 | 1.18e-01 | 1.27e-01 | 4.06e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Download the DEG result list for C_vs_CL4.Download the whole result list for C_vs_CL4.DEG table for the contrast K_vs_KL4The following table presents the top 10% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast K_vs_KL4. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right. | chromosome | start | end | gene_id | gc_content | strand | gene_name | biotype | p-value_deseq | FDR_deseq | log2_normalized_fold_change_K_vs_KL4 | log2_normalized_mean_counts_K | rpgm_normalized_mean_counts_K | log2_normalized_mean_counts_KL4 | rpgm_normalized_mean_counts_KL4 | log2_normalized_counts_DK3R4b_K23 | log2_normalized_counts_DK3R5_K2 | log2_normalized_counts_DK3R6_K3 | rpgm_normalized_counts_DK3R4b_K23 | rpgm_normalized_counts_DK3R5_K2 | rpgm_normalized_counts_DK3R6_K3 | log2_normalized_counts_DK3R10b_K23L4 | log2_normalized_counts_DK3R11_K2L4 | log2_normalized_counts_DK3R12_K3L4 | rpgm_normalized_counts_DK3R10b_K23L4 | rpgm_normalized_counts_DK3R11_K2L4 | rpgm_normalized_counts_DK3R12_K3L4 | LN | AR | MD | MN | QN | KN | CM | BT |
|---|
| chr18 | 74939322 | 74961263 | ENSMUSG00000053846 | 0.4758 | - | Lipg | protein_coding | 4.50e-23 | 1.51e-19 | 7.82796 | 1.30e+00 | 6.16e-04 | 9.35e+00 | 2.10e-01 | 1.58e+00 | 0.00e+00 | 2.32e+00 | 6.16e-04 | 0.00e+00 | 1.23e-03 | 9.80e+00 | 8.79e+00 | 9.48e+00 | 2.73e-01 | 1.36e-01 | 2.19e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr12 | 26469204 | 26479835 | ENSMUSG00000020638 | 0.4656 | + | Cmpk2 | protein_coding | 3.54e-19 | 5.93e-16 | 6.84779 | 5.41e+00 | 1.44e-02 | 1.23e+01 | 1.70e+00 | 5.13e+00 | 5.86e+00 | 5.25e+00 | 1.15e-02 | 1.93e-02 | 1.25e-02 | 1.24e+01 | 1.24e+01 | 1.20e+01 | 1.86e+00 | 1.87e+00 | 1.37e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 34941750 | 34961772 | ENSMUSG00000026875 | 0.4977 | - | Traf1 | protein_coding | 3.15e-18 | 3.52e-15 | 6.49185 | 2.60e+00 | 6.26e-04 | 9.14e+00 | 6.68e-02 | 3.00e+00 | 2.00e+00 | 2.81e+00 | 8.22e-04 | 3.52e-04 | 7.05e-04 | 9.35e+00 | 9.19e+00 | 8.89e+00 | 7.65e-02 | 6.85e-02 | 5.56e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr17 | 67842713 | 68004120 | ENSMUSG00000024043 | 0.4441 | - | Arhgap28 | protein_coding | 1.35e-17 | 1.13e-14 | 6.88020 | 6.67e-01 | 8.36e-05 | 7.61e+00 | 2.45e-02 | 1.00e+00 | 1.00e+00 | 0.00e+00 | 1.25e-04 | 1.25e-04 | 0.00e+00 | 7.83e+00 | 7.43e+00 | 7.56e+00 | 2.85e-02 | 2.14e-02 | 2.36e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 165055627 | 165072948 | ENSMUSG00000017652 | 0.4963 | + | Cd40 | protein_coding | 1.36e-16 | 9.09e-14 | 5.87602 | 5.36e+00 | 5.41e-03 | 1.14e+01 | 3.25e-01 | 6.00e+00 | 4.39e+00 | 5.70e+00 | 7.64e-03 | 2.42e-03 | 6.18e-03 | 1.11e+01 | 1.16e+01 | 1.13e+01 | 2.74e-01 | 3.88e-01 | 3.13e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr9 | 7272514 | 7283331 | ENSMUSG00000050578 | 0.3772 | + | Mmp13 | protein_coding | 3.34e-14 | 1.78e-11 | 5.47508 | 2.42e+00 | 2.97e-03 | 8.52e+00 | 1.50e-01 | 4.25e+00 | 2.00e+00 | 1.00e+00 | 7.30e-03 | 1.22e-03 | 4.05e-04 | 8.55e+00 | 8.28e+00 | 8.74e+00 | 1.52e-01 | 1.25e-01 | 1.73e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr19 | 34550694 | 34576419 | ENSMUSG00000045932 | 0.4241 | + | Ifit2 | protein_coding | 3.71e-14 | 1.78e-11 | 5.04539 | 6.18e+00 | 1.62e-02 | 1.12e+01 | 5.44e-01 | 6.34e+00 | 5.91e+00 | 6.30e+00 | 1.80e-02 | 1.32e-02 | 1.75e-02 | 1.13e+01 | 1.08e+01 | 1.16e+01 | 5.66e-01 | 3.87e-01 | 6.78e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr7 | 126589010 | 126594941 | ENSMUSG00000044701 | 0.5005 | - | Il27 | protein_coding | 3.48e-13 | 1.46e-10 | 5.25267 | 2.01e+00 | 2.82e-03 | 7.66e+00 | 1.31e-01 | 3.46e+00 | 1.00e+00 | 1.58e+00 | 6.50e-03 | 6.50e-04 | 1.30e-03 | 7.55e+00 | 7.78e+00 | 7.67e+00 | 1.21e-01 | 1.42e-01 | 1.31e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 144242296 | 144249242 | ENSMUSG00000026358 | 0.3610 | - | Rgs1 | protein_coding | 2.09e-12 | 7.80e-10 | 4.97400 | 3.11e+00 | 9.74e-04 | 8.14e+00 | 3.42e-02 | 2.32e+00 | 3.70e+00 | 3.32e+00 | 4.67e-04 | 1.40e-03 | 1.05e-03 | 8.67e+00 | 7.64e+00 | 8.10e+00 | 4.73e-02 | 2.31e-02 | 3.20e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 11705290 | 11734317 | ENSMUSG00000023206 | 0.4426 | + | Il15ra | protein_coding | 3.19e-12 | 1.07e-09 | 4.94342 | 3.07e+00 | 1.23e-03 | 8.01e+00 | 4.25e-02 | 3.17e+00 | 3.46e+00 | 2.58e+00 | 1.28e-03 | 1.60e-03 | 8.00e-04 | 8.50e+00 | 7.61e+00 | 7.92e+00 | 5.76e-02 | 3.12e-02 | 3.87e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 92321347 | 92328079 | ENSMUSG00000029417 | 0.4151 | - | Cxcl9 | protein_coding | 1.48e-11 | 4.52e-09 | 4.92283 | 2.13e+00 | 8.06e-04 | 7.20e+00 | 3.04e-02 | 1.00e+00 | 2.81e+00 | 2.58e+00 | 2.02e-04 | 1.21e-03 | 1.01e-03 | 7.69e+00 | 6.81e+00 | 7.09e+00 | 4.15e-02 | 2.24e-02 | 2.72e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 105115767 | 105139586 | ENSMUSG00000079363 | 0.4090 | - | Gbp4 | protein_coding | 1.99e-11 | 5.56e-09 | 4.69402 | 3.09e+00 | 5.50e-04 | 7.80e+00 | 1.60e-02 | 2.81e+00 | 3.46e+00 | 3.00e+00 | 4.30e-04 | 7.17e-04 | 5.02e-04 | 7.77e+00 | 7.58e+00 | 8.03e+00 | 1.56e-02 | 1.37e-02 | 1.87e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 171632403 | 171653035 | ENSMUSG00000038179 | 0.4492 | - | Slamf7 | protein_coding | 3.34e-11 | 8.61e-09 | 4.23230 | 6.09e+00 | 1.23e-02 | 1.04e+01 | 2.34e-01 | 6.39e+00 | 5.64e+00 | 6.25e+00 | 1.48e-02 | 8.72e-03 | 1.34e-02 | 1.02e+01 | 1.03e+01 | 1.06e+01 | 2.14e-01 | 2.18e-01 | 2.70e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr17 | 35199381 | 35202007 | ENSMUSG00000024401 | 0.5230 | - | Tnf | protein_coding | 4.81e-11 | 1.15e-08 | 5.33164 | 8.62e+00 | 2.24e-01 | 1.41e+01 | 9.06e+00 | 9.52e+00 | 7.55e+00 | 8.77e+00 | 3.64e-01 | 9.27e-02 | 2.17e-01 | 1.37e+01 | 1.47e+01 | 1.39e+01 | 6.61e+00 | 1.31e+01 | 7.45e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr13 | 42301270 | 42307989 | ENSMUSG00000021367 | 0.4580 | + | Edn1 | protein_coding | 5.14e-11 | 1.15e-08 | 5.59096 | 6.67e-01 | 2.82e-04 | 6.30e+00 | 3.36e-02 | 0.00e+00 | 1.00e+00 | 1.00e+00 | 0.00e+00 | 4.23e-04 | 4.23e-04 | 6.64e+00 | 6.34e+00 | 5.91e+00 | 4.19e-02 | 3.38e-02 | 2.50e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 30013114 | 30019981 | ENSMUSG00000025746 | 0.4078 | + | Il6 | protein_coding | 8.44e-11 | 1.77e-08 | 4.32643 | 2.66e+00 | 3.31e-03 | 7.73e+00 | 7.29e-02 | 1.00e+00 | 2.32e+00 | 4.64e+00 | 3.42e-04 | 1.37e-03 | 8.21e-03 | 7.92e+00 | 7.46e+00 | 7.81e+00 | 8.25e-02 | 5.99e-02 | 7.63e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr3 | 107741048 | 107760469 | ENSMUSG00000014599 | 0.5122 | - | Csf1 | protein_coding | 1.39e-10 | 2.74e-08 | 4.39530 | 2.57e+00 | 6.93e-04 | 7.33e+00 | 1.67e-02 | 3.70e+00 | 1.00e+00 | 3.00e+00 | 1.25e-03 | 1.04e-04 | 7.27e-04 | 7.39e+00 | 7.40e+00 | 7.20e+00 | 1.73e-02 | 1.75e-02 | 1.52e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 145784734 | 145887616 | ENSMUSG00000001768 | 0.4527 | + | Rin2 | protein_coding | 1.50e-10 | 2.79e-08 | 4.16016 | 5.82e+00 | 3.20e-03 | 1.00e+01 | 5.82e-02 | 5.43e+00 | 5.91e+00 | 6.13e+00 | 2.37e-03 | 3.33e-03 | 3.90e-03 | 9.99e+00 | 1.01e+01 | 9.95e+00 | 5.75e-02 | 6.14e-02 | 5.58e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr6 | 123281789 | 123289870 | ENSMUSG00000030142 | 0.4134 | - | Clec4e | protein_coding | 4.86e-10 | 8.58e-08 | 4.13750 | 4.01e+00 | 2.85e-03 | 8.18e+00 | 5.31e-02 | 4.00e+00 | 3.58e+00 | 4.46e+00 | 2.72e-03 | 2.00e-03 | 3.81e-03 | 8.46e+00 | 7.87e+00 | 8.20e+00 | 6.36e-02 | 4.23e-02 | 5.34e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 83647844 | 83649355 | ENSMUSG00000000982 | 0.4630 | - | Ccl3 | protein_coding | 5.98e-10 | 9.55e-08 | 3.91768 | 7.11e+00 | 8.66e-02 | 1.11e+01 | 1.32e+00 | 7.23e+00 | 6.48e+00 | 7.61e+00 | 8.96e-02 | 5.29e-02 | 1.17e-01 | 1.13e+01 | 1.09e+01 | 1.11e+01 | 1.48e+00 | 1.15e+00 | 1.32e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr3 | 27317028 | 27342427 | ENSMUSG00000039304 | 0.4494 | + | Tnfsf10 | protein_coding | 6.15e-10 | 9.55e-08 | 4.19689 | 4.09e+00 | 2.48e-03 | 8.33e+00 | 4.81e-02 | 3.58e+00 | 4.58e+00 | 4.09e+00 | 1.64e-03 | 3.42e-03 | 2.38e-03 | 8.46e+00 | 8.12e+00 | 8.42e+00 | 5.21e-02 | 4.12e-02 | 5.09e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr8 | 27138773 | 27174646 | ENSMUSG00000031488 | 0.4754 | - | Rab11fip1 | protein_coding | 6.27e-10 | 9.55e-08 | 4.18175 | 3.15e+00 | 8.34e-04 | 7.33e+00 | 1.69e-02 | 3.32e+00 | 2.81e+00 | 3.32e+00 | 9.38e-04 | 6.25e-04 | 9.38e-04 | 7.12e+00 | 7.24e+00 | 7.64e+00 | 1.44e-02 | 1.56e-02 | 2.07e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 82101845 | 82103400 | ENSMUSG00000035352 | 0.4389 | + | Ccl12 | protein_coding | 6.90e-10 | 1.01e-07 | 4.02848 | 5.24e+00 | 2.65e-02 | 9.30e+00 | 4.43e-01 | 5.67e+00 | 5.09e+00 | 4.95e+00 | 3.52e-02 | 2.32e-02 | 2.11e-02 | 9.33e+00 | 9.19e+00 | 9.38e+00 | 4.52e-01 | 4.12e-01 | 4.67e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 127336159 | 127338376 | ENSMUSG00000027368 | 0.5762 | + | Dusp2 | protein_coding | 1.20e-09 | 1.67e-07 | 5.49291 | 9.44e+00 | 2.27e-01 | 1.49e+01 | 1.02e+01 | 9.38e+00 | 9.20e+00 | 9.73e+00 | 2.15e-01 | 1.90e-01 | 2.74e-01 | 1.49e+01 | 1.51e+01 | 1.48e+01 | 9.60e+00 | 1.15e+01 | 9.51e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr17 | 29490812 | 29496111 | ENSMUSG00000024014 | 0.5274 | + | Pim1 | protein_coding | 1.39e-09 | 1.86e-07 | 4.47167 | 8.89e+00 | 1.88e-01 | 1.34e+01 | 4.17e+00 | 8.88e+00 | 8.42e+00 | 9.37e+00 | 1.80e-01 | 1.31e-01 | 2.53e-01 | 1.32e+01 | 1.35e+01 | 1.35e+01 | 3.72e+00 | 4.46e+00 | 4.35e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 21091291 | 21150323 | ENSMUSG00000020134 | 0.3866 | + | Peli1 | protein_coding | 1.47e-09 | 1.89e-07 | 3.94476 | 7.44e+00 | 4.22e-02 | 1.14e+01 | 6.54e-01 | 7.23e+00 | 8.08e+00 | 7.01e+00 | 3.46e-02 | 6.24e-02 | 2.97e-02 | 1.17e+01 | 1.11e+01 | 1.15e+01 | 7.73e-01 | 5.20e-01 | 6.68e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr19 | 7557459 | 7588545 | ENSMUSG00000060675 | 0.4566 | + | Pla2g16 | protein_coding | 3.50e-09 | 4.35e-07 | 3.75957 | 5.77e+00 | 7.02e-03 | 9.59e+00 | 9.66e-02 | 6.34e+00 | 5.61e+00 | 5.36e+00 | 1.00e-02 | 6.01e-03 | 5.01e-03 | 9.57e+00 | 9.52e+00 | 9.69e+00 | 9.51e-02 | 9.16e-02 | 1.03e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 78920787 | 78960254 | ENSMUSG00000020826 | 0.5008 | + | Nos2 | protein_coding | 6.71e-09 | 8.04e-07 | 5.03562 | 6.67e-01 | 2.21e-04 | 5.76e+00 | 1.78e-02 | 0.00e+00 | 1.00e+00 | 1.00e+00 | 0.00e+00 | 3.32e-04 | 3.32e-04 | 5.88e+00 | 5.46e+00 | 5.93e+00 | 1.93e-02 | 1.43e-02 | 1.99e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 59541568 | 59566956 | ENSMUSG00000032691 | 0.4597 | + | Nlrp3 | protein_coding | 1.02e-08 | 1.18e-06 | 3.75731 | 4.87e+00 | 8.85e-03 | 8.57e+00 | 1.24e-01 | 5.00e+00 | 4.95e+00 | 4.64e+00 | 9.68e-03 | 9.37e-03 | 7.50e-03 | 9.10e+00 | 8.09e+00 | 8.53e+00 | 1.71e-01 | 8.47e-02 | 1.15e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr13 | 69497959 | 69534617 | ENSMUSG00000034575 | 0.4928 | - | Papd7 | protein_coding | 1.42e-08 | 1.59e-06 | 3.76765 | 5.00e+00 | 1.01e-02 | 8.78e+00 | 1.41e-01 | 5.55e+00 | 4.86e+00 | 4.58e+00 | 1.43e-02 | 8.72e-03 | 7.16e-03 | 9.20e+00 | 8.84e+00 | 8.30e+00 | 1.83e-01 | 1.42e-01 | 9.78e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr4 | 135213969 | 135272814 | ENSMUSG00000037242 | 0.4548 | - | Clic4 | protein_coding | 2.26e-08 | 2.45e-06 | 3.60254 | 8.44e+00 | 6.49e-02 | 1.21e+01 | 7.90e-01 | 8.86e+00 | 7.75e+00 | 8.72e+00 | 8.21e-02 | 3.79e-02 | 7.46e-02 | 1.22e+01 | 1.20e+01 | 1.22e+01 | 8.30e-01 | 7.20e-01 | 8.21e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 114922781 | 114934386 | ENSMUSG00000063193 | 0.4817 | - | Cd300lb | protein_coding | 2.85e-08 | 2.99e-06 | -4.22995 | 6.71e+00 | 2.28e-02 | 2.40e+00 | 1.01e-03 | 6.51e+00 | 6.60e+00 | 7.03e+00 | 1.95e-02 | 2.08e-02 | 2.81e-02 | 2.81e+00 | 1.58e+00 | 2.81e+00 | 1.30e-03 | 4.33e-04 | 1.30e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr18 | 60376029 | 60392627 | ENSMUSG00000054072 | 0.4020 | + | Iigp1 | protein_coding | 4.12e-08 | 4.18e-06 | 3.49157 | 5.13e+00 | 1.30e-02 | 8.71e+00 | 1.49e-01 | 4.46e+00 | 5.13e+00 | 5.81e+00 | 7.43e-03 | 1.20e-02 | 1.94e-02 | 8.85e+00 | 8.38e+00 | 8.89e+00 | 1.63e-01 | 1.18e-01 | 1.67e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr4 | 124656807 | 124660655 | ENSMUSG00000090125 | 0.6391 | + | Pou3f1 | protein_coding | 4.29e-08 | 4.23e-06 | 4.89482 | 3.33e-01 | 1.28e-04 | 5.31e+00 | 1.49e-02 | 0.00e+00 | 1.00e+00 | 0.00e+00 | 0.00e+00 | 3.85e-04 | 0.00e+00 | 5.36e+00 | 5.25e+00 | 5.32e+00 | 1.54e-02 | 1.42e-02 | 1.50e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr3 | 142530342 | 142550149 | ENSMUSG00000040253 | 0.4126 | + | Gbp7 | protein_coding | 7.05e-08 | 6.76e-06 | 3.43882 | 5.49e+00 | 9.53e-03 | 8.93e+00 | 1.05e-01 | 5.93e+00 | 5.64e+00 | 4.91e+00 | 1.24e-02 | 1.01e-02 | 6.01e-03 | 8.98e+00 | 8.38e+00 | 9.43e+00 | 1.05e-01 | 6.90e-02 | 1.42e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 90903871 | 90905938 | ENSMUSG00000058427 | 0.4507 | + | Cxcl2 | protein_coding | 7.70e-08 | 7.17e-06 | 3.39571 | 5.05e+00 | 1.15e-02 | 8.40e+00 | 1.25e-01 | 5.39e+00 | 4.81e+00 | 4.95e+00 | 1.45e-02 | 9.54e-03 | 1.06e-02 | 8.43e+00 | 7.82e+00 | 8.94e+00 | 1.22e-01 | 7.95e-02 | 1.73e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr10 | 19000910 | 19015657 | ENSMUSG00000019850 | 0.4554 | - | Tnfaip3 | protein_coding | 1.03e-07 | 9.35e-06 | 3.35860 | 4.94e+00 | 4.78e-03 | 8.42e+00 | 5.04e-02 | 4.86e+00 | 4.25e+00 | 5.73e+00 | 4.10e-03 | 2.63e-03 | 7.61e-03 | 8.70e+00 | 8.19e+00 | 8.35e+00 | 6.08e-02 | 4.26e-02 | 4.77e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 83002158 | 83020810 | ENSMUSG00000035208 | 0.4404 | - | Slfn8 | protein_coding | 1.34e-07 | 1.17e-05 | 3.37168 | 5.82e+00 | 1.78e-02 | 9.15e+00 | 1.87e-01 | 5.91e+00 | 5.98e+00 | 5.58e+00 | 1.87e-02 | 1.97e-02 | 1.49e-02 | 8.61e+00 | 9.58e+00 | 9.26e+00 | 1.23e-01 | 2.42e-01 | 1.95e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr4 | 58435255 | 58553898 | ENSMUSG00000038668 | 0.4240 | - | Lpar1 | protein_coding | 1.36e-07 | 1.17e-05 | 3.35403 | 3.44e+00 | 2.64e-03 | 7.07e+00 | 2.89e-02 | 4.32e+00 | 2.00e+00 | 4.00e+00 | 4.06e-03 | 6.42e-04 | 3.21e-03 | 6.86e+00 | 6.94e+00 | 7.41e+00 | 2.46e-02 | 2.61e-02 | 3.61e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr19 | 29367455 | 29388095 | ENSMUSG00000016496 | 0.4295 | + | Cd274 | protein_coding | 1.53e-07 | 1.28e-05 | 3.27107 | 8.52e+00 | 9.48e-02 | 1.18e+01 | 9.18e-01 | 8.84e+00 | 8.11e+00 | 8.60e+00 | 1.16e-01 | 7.01e-02 | 9.86e-02 | 1.18e+01 | 1.17e+01 | 1.20e+01 | 8.78e-01 | 8.44e-01 | 1.03e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr3 | 32580332 | 32616585 | ENSMUSG00000027669 | 0.4603 | - | Gnb4 | protein_coding | 2.21e-07 | 1.79e-05 | 4.49825 | 6.67e-01 | 4.22e-05 | 5.19e+00 | 2.32e-03 | 1.00e+00 | 0.00e+00 | 1.00e+00 | 6.33e-05 | 0.00e+00 | 6.33e-05 | 4.70e+00 | 5.25e+00 | 5.61e+00 | 1.58e-03 | 2.34e-03 | 3.04e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr17 | 44096308 | 44105809 | ENSMUSG00000023961 | 0.4252 | - | Enpp4 | protein_coding | 2.24e-07 | 1.79e-05 | 3.40808 | 3.67e+00 | 2.82e-03 | 7.07e+00 | 3.22e-02 | 3.32e+00 | 4.00e+00 | 3.70e+00 | 2.11e-03 | 3.52e-03 | 2.82e-03 | 6.73e+00 | 6.99e+00 | 7.50e+00 | 2.47e-02 | 2.96e-02 | 4.23e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr7 | 135537481 | 135686293 | ENSMUSG00000041836 | 0.4773 | + | Ptpre | protein_coding | 2.51e-07 | 1.96e-05 | -3.48409 | 7.73e+00 | 3.19e-02 | 4.20e+00 | 2.72e-03 | 7.86e+00 | 7.36e+00 | 7.98e+00 | 3.42e-02 | 2.42e-02 | 3.73e-02 | 3.58e+00 | 4.32e+00 | 4.70e+00 | 1.63e-03 | 2.82e-03 | 3.70e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr10 | 42181841 | 42276755 | ENSMUSG00000048756 | 0.4750 | - | Foxo3 | protein_coding | 2.93e-07 | 2.23e-05 | -3.33949 | 7.36e+00 | 1.65e-02 | 3.99e+00 | 1.54e-03 | 7.33e+00 | 7.54e+00 | 7.22e+00 | 1.61e-02 | 1.86e-02 | 1.49e-02 | 4.46e+00 | 3.81e+00 | 3.70e+00 | 2.11e-03 | 1.31e-03 | 1.21e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr6 | 53287270 | 53700376 | ENSMUSG00000053007 | 0.4349 | + | 9430076C15Rik | protein_coding | 3.43e-07 | 2.56e-05 | 3.18400 | 5.50e+00 | 2.08e-03 | 8.60e+00 | 1.93e-02 | 5.49e+00 | 5.49e+00 | 5.52e+00 | 2.06e-03 | 2.06e-03 | 2.11e-03 | 8.02e+00 | 8.56e+00 | 9.23e+00 | 1.21e-02 | 1.77e-02 | 2.80e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 105386291 | 105399319 | ENSMUSG00000005973 | 0.4793 | - | Rcn1 | protein_coding | 3.53e-07 | 2.57e-05 | 3.27694 | 5.19e+00 | 1.28e-02 | 8.52e+00 | 1.27e-01 | 5.75e+00 | 5.00e+00 | 4.81e+00 | 1.84e-02 | 1.08e-02 | 9.37e-03 | 8.63e+00 | 8.46e+00 | 8.49e+00 | 1.37e-01 | 1.21e-01 | 1.24e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 117966079 | 117970047 | ENSMUSG00000053113 | 0.6102 | - | Socs3 | protein_coding | 3.82e-07 | 2.73e-05 | 3.09695 | 6.11e+00 | 1.74e-02 | 9.25e+00 | 1.51e-01 | 6.43e+00 | 5.61e+00 | 6.30e+00 | 2.10e-02 | 1.19e-02 | 1.93e-02 | 9.36e+00 | 9.06e+00 | 9.32e+00 | 1.63e-01 | 1.32e-01 | 1.58e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 44400063 | 44414033 | ENSMUSG00000004296 | 0.4385 | + | Il12b | protein_coding | 4.01e-07 | 2.80e-05 | 4.59495 | 8.62e-01 | 4.88e-04 | 5.55e+00 | 2.31e-02 | 1.00e+00 | 0.00e+00 | 1.58e+00 | 4.88e-04 | 0.00e+00 | 9.75e-04 | 5.04e+00 | 5.78e+00 | 5.83e+00 | 1.56e-02 | 2.63e-02 | 2.73e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr6 | 134715468 | 134792625 | ENSMUSG00000030203 | 0.4174 | - | Dusp16 | protein_coding | 4.56e-07 | 3.12e-05 | 3.03103 | 6.50e+00 | 7.59e-03 | 9.60e+00 | 6.26e-02 | 7.28e+00 | 5.73e+00 | 6.51e+00 | 1.19e-02 | 4.00e-03 | 6.93e-03 | 8.93e+00 | 9.81e+00 | 1.00e+01 | 3.74e-02 | 6.90e-02 | 8.15e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr10 | 62493833 | 62527451 | ENSMUSG00000020077 | 0.4550 | - | Srgn | protein_coding | 5.57e-07 | 3.72e-05 | 3.24380 | 5.37e+00 | 8.64e-03 | 8.65e+00 | 8.36e-02 | 4.95e+00 | 5.88e+00 | 5.29e+00 | 6.17e-03 | 1.19e-02 | 7.82e-03 | 8.98e+00 | 8.33e+00 | 8.63e+00 | 1.04e-01 | 6.60e-02 | 8.11e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr3 | 127869058 | 127896324 | ENSMUSG00000050549 | 0.4029 | - | 5730508B09Rik | protein_coding | 5.66e-07 | 3.72e-05 | 3.18845 | 4.84e+00 | 8.68e-03 | 8.01e+00 | 8.16e-02 | 4.86e+00 | 4.86e+00 | 4.81e+00 | 8.78e-03 | 8.78e-03 | 8.47e-03 | 8.27e+00 | 7.63e+00 | 8.12e+00 | 9.63e-02 | 6.18e-02 | 8.69e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr14 | 47153895 | 47189413 | ENSMUSG00000037580 | 0.4495 | - | Gch1 | protein_coding | 5.77e-07 | 3.72e-05 | 3.13274 | 6.43e+00 | 2.73e-02 | 9.58e+00 | 2.42e-01 | 6.49e+00 | 6.69e+00 | 6.11e+00 | 2.82e-02 | 3.23e-02 | 2.15e-02 | 9.76e+00 | 9.48e+00 | 9.49e+00 | 2.74e-01 | 2.25e-01 | 2.27e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 97362551 | 97398542 | ENSMUSG00000038485 | 0.4674 | + | Socs7 | protein_coding | 6.01e-07 | 3.80e-05 | 2.91422 | 7.59e+00 | 2.40e-02 | 1.06e+01 | 1.81e-01 | 8.02e+00 | 6.70e+00 | 8.05e+00 | 2.97e-02 | 1.19e-02 | 3.04e-02 | 9.98e+00 | 1.06e+01 | 1.11e+01 | 1.16e-01 | 1.84e-01 | 2.44e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Download the DEG result list for K_vs_KL4.Download the whole result list for K_vs_KL4.DEG table for the contrast CL4_vs_KL4The following table presents the top 10% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast CL4_vs_KL4. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right. | chromosome | start | end | gene_id | gc_content | strand | gene_name | biotype | p-value_deseq | FDR_deseq | log2_normalized_fold_change_CL4_vs_KL4 | log2_normalized_mean_counts_CL4 | rpgm_normalized_mean_counts_CL4 | log2_normalized_mean_counts_KL4 | rpgm_normalized_mean_counts_KL4 | log2_normalized_counts_DK3R7_C1L4 | log2_normalized_counts_DK3R8_C2L4 | log2_normalized_counts_DK3R9r_C3L4 | rpgm_normalized_counts_DK3R7_C1L4 | rpgm_normalized_counts_DK3R8_C2L4 | rpgm_normalized_counts_DK3R9r_C3L4 | log2_normalized_counts_DK3R10b_K23L4 | log2_normalized_counts_DK3R11_K2L4 | log2_normalized_counts_DK3R12_K3L4 | rpgm_normalized_counts_DK3R10b_K23L4 | rpgm_normalized_counts_DK3R11_K2L4 | rpgm_normalized_counts_DK3R12_K3L4 | LN | AR | MD | MN | QN | KN | CM | BT |
|---|
| chr5 | 89417522 | 89457898 | ENSMUSG00000035540 | 0.4032 | - | Gc | protein_coding | 3.50e-07 | 0.00117 | -5.83289 | 2.47e+00 | 1.50e-02 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 7.40e+00 | 0.00e+00 | 0.00e+00 | 4.49e-02 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr3 | 146570426 | 146632305 | ENSMUSG00000028186 | 0.4408 | + | Uox | protein_coding | 5.42e-06 | 0.00908 | -5.25739 | 2.41e+00 | 7.50e-03 | 3.33e-01 | 5.00e-05 | 0.00e+00 | 0.00e+00 | 7.24e+00 | 0.00e+00 | 0.00e+00 | 2.25e-02 | 0.00e+00 | 0.00e+00 | 1.00e+00 | 0.00e+00 | 0.00e+00 | 1.50e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Download the DEG result list for CL4_vs_KL4.Download the whole result list for CL4_vs_KL4.
References
|
|
