python /data/results/tools/rnaseq/mats/rMATS.4.0.2/rMATS-turbo-Linux-UCS4/rmats.py --b1 /mnt/max/b/genomics_facility/DKlab/mr/tzanos/mm10-GRCm38.p6/rnaseq/rmats/wtIL4.txt --b2 /mnt/max/b/genomics_facility/DKlab/mr/tzanos/mm10-GRCm38.p6/rnaseq/rmats/wtIFN.txt --gtf /mnt/max/b/genomics_facility/DKlab/mr/tzanos/rep/e/Genome/mm10e.gtf --od rmats-WT_M2vsM1 -t paired --nthread 16 --readLength 100 --anchorLength 1 --tstat 16

python /data/results/tools/rnaseq/mats/rMATS.4.0.2/rMATS-turbo-Linux-UCS4/rmats.py --b1 /mnt/max/b/genomics_facility/DKlab/mr/tzanos/mm10-GRCm38.p6/rnaseq/rmats/koIFN.txt --b2 /mnt/max/b/genomics_facility/DKlab/mr/tzanos/mm10-GRCm38.p6/rnaseq/rmats/wtIFN.txt --gtf /mnt/max/b/genomics_facility/DKlab/mr/tzanos/rep/e/Genome/mm10e.gtf --od rmats-IFN -t paired --nthread 16 --readLength 100 --anchorLength 1 --tstat 16

python /data/results/tools/rnaseq/mats/rMATS.4.0.2/rMATS-turbo-Linux-UCS4/rmats.py --b1 /mnt/max/b/genomics_facility/DKlab/mr/tzanos/mm10-GRCm38.p6/rnaseq/rmats/koIL4.txt --b2 /mnt/max/b/genomics_facility/DKlab/mr/tzanos/mm10-GRCm38.p6/rnaseq/rmats/wtIL4.txt --gtf /mnt/max/b/genomics_facility/DKlab/mr/tzanos/rep/e/Genome/mm10e.gtf --od rmats-IL4 -t paired --nthread 16 --readLength 100 --anchorLength 1 --tstat 16