Left reads: Input : 42154125 Mapped : 40693425 (96.5% of input) of these: 7223530 (17.8%) have multiple alignments (39365 have >20) Right reads: Input : 42154125 Mapped : 40101781 (95.1% of input) of these: 7163749 (17.9%) have multiple alignments (39377 have >20) Unpaired reads: Input : 141 Mapped : 138 (97.9% of input) of these: 9 ( 6.5%) have multiple alignments (0 have >20) 95.8% overall read mapping rate. Aligned pairs: 38720285 of these: 7032813 (18.2%) have multiple alignments 38436662 (99.3%) are discordant alignments 0.7% concordant pair alignment rate.