coverageBed -split -abam sortedwt01pos.bam.bam -b transcripts.gff > wt01pos.split.coverage
coverageBed -split -abam sortedwt02pos.bam.bam -b transcripts.gff > wt02pos.split.coverage
coverageBed -split -abam sortedKo01pos.bam.bam -b transcripts.gff > ko01pos.split.coverage
coverageBed -split -abam sortedKo02pos.bam.bam -b transcripts.gff > ko02pos.split.coverage

coverageBed -split -abam sortedwt21pos.bam -b transcripts.gff > wt21pos.split.coverage
coverageBed -split -abam sortedwt22pos.bam -b transcripts.gff > wt22pos.split.coverage
coverageBed -split -abam sortedKO21pos.bam -b transcripts.gff > ko21pos.split.coverage
coverageBed -split -abam sortedKO22pos.bam -b transcripts.gff > ko22pos.split.coverage

coverageBed -split -abam sortedwt61pos.bam -b transcripts.gff > wt61pos.split.coverage
coverageBed -split -abam sortedwt62pos.bam -b transcripts.gff > wt62pos.split.coverage
coverageBed -split -abam sortedKo61pos.bam -b transcripts.gff > ko61pos.split.coverage
coverageBed -split -abam sortedKo62pos.bam -b transcripts.gff > ko62pos.split.coverage

coverageBed -split -abam sortedwtIFN1pos.bam -b transcripts.gff > wtIFN1pos.split.coverage
coverageBed -split -abam sortedwtIFN2pos.bam -b transcripts.gff > wtIFN2pos.split.coverage
coverageBed -split -abam sortedKOIFN1pos.bam -b transcripts.gff > koIFN1pos.split.coverage
coverageBed -split -abam sortedKOIFN2pos.bam -b transcripts.gff > koIFN2pos.split.coverage

coverageBed -split -abam sortedwt01IL4pos.bam  -b transcripts.gff > wtIL41pos.split.coverage
coverageBed -split -abam sortedwt02IL4pos.bam -b transcripts.gff > wtIL42pos.split.coverage
coverageBed -split -abam sortedKo1IL4pos.bam -b transcripts.gff > koIL41pos.split.coverage
coverageBed -split -abam sortedKo2IL4pos.bam -b transcripts.gff > koIL42pos.split.coverage