runStringtir4.sh
#awk -f getEdgerDEresultsAndGetAltSplicedGroups2.awk edgeRtranscriptsExpr-wtVSko3.withGID.csv > edgeRtranscriptsExpr-wtVSko3.withGID.csv.alt_spliced.csv
awk -f getEdgerDEresultsAndGetAltSplicedGroupsInAtLeastOneCondition1.awk edgeRtranscriptsExpr-wtVSko3.withGID.csv > edgeRtranscriptsExpr-wtVSko3.withGID.csv.alt_spliced_in_GE_one_condition.csv
awk -f mergeDEresults1.awk all_pairs.txt > wtVSko_transcript_results_all_pairs.csv
awk -f mergeDEresultsAndGetAltSpliced1.awk all_pairs.txt > wtVSko_transcript_results_all_pairs_alt_spliced.csv

edgeRtranscriptsExpr-wtVSko.withGID.csv.alt_spliced-anticorrLT0.1.xlsx

/data/images/proton/DKlab/mr/rnaseq/stringtie/mergeDEresultsAndGetAltSpliced1.awk


wc edgeRtranscripts_wtVSko.withGID_alt_spliced.csv
   873  23571 235647 edgeRtranscripts_wtVSko.withGID_alt_spliced.csv
   # test anticorr<=-0.5 in each condition:
awk -v verb=0 -f getEdgerDEresultsAndGetAltSplicedGroupsInAtLeastOneCondition1.awk edgeRtranscriptsExpr-wtVSko.withGID.csv > edgeRtranscriptsExpr-wtVSko.withGID.csv.alt_spliced_in_GE_one_condition.csv
wc edgeRtranscriptsExpr-wtVSko.withGID.csv.alt_spliced_in_GE_one_condition.csv
   20  1200 15717 edgeRtranscriptsExpr-wtVSko.withGID.csv.alt_spliced_in_GE_one_condition.csv
transcripts_wt_vs_ko_alt_spliced_in_at_least_one_condition.xlsx