#!/bin/bash
#Sampling to smallest library pair sortedwt01pos.sorted.bam containing159034728 reads
ln -s . mm9
#echo sortedwt01pos.sorted.bam
#/data/results/tools/proton/tophat2unstranded-sampled-pair-bigwig1.sh sortedwt01pos.sorted.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 1 sortedwt02pos.sorted.bam
echo sortedwt21pos.bam
/data/results/tools/proton/tophat2unstranded-sampled-pair-bigwig1.sh sortedwt21pos.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.984396 sortedwt22pos.bam
echo sortedwt61pos.bam
/data/results/tools/proton/tophat2unstranded-sampled-pair-bigwig1.sh sortedwt61pos.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.948448 sortedwt62pos.bam
echo sortedwtIFN1pos.bam
/data/results/tools/proton/tophat2unstranded-sampled-pair-bigwig1.sh sortedwtIFN1pos.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.804708 sortedwtIFN2pos.bam
echo sortedwt01IL4pos.bam
/data/results/tools/proton/tophat2unstranded-sampled-pair-bigwig1.sh sortedwt01IL4pos.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.906979 sortedwt02IL4pos.bam
echo sortedKo01pos.sorted.bam
/data/results/tools/proton/tophat2unstranded-sampled-pair-bigwig1.sh sortedKo01pos.sorted.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.803935 sortedKo02pos.sorted.bam
echo sortedKO21pos.bam
/data/results/tools/proton/tophat2unstranded-sampled-pair-bigwig1.sh sortedKO21pos.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.75422 sortedKO22pos.bam
echo sortedKo61pos.bam
/data/results/tools/proton/tophat2unstranded-sampled-pair-bigwig1.sh sortedKo61pos.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.729382 sortedKo62pos.bam
echo sortedKOIFN1pos.bam
/data/results/tools/proton/tophat2unstranded-sampled-pair-bigwig1.sh sortedKOIFN1pos.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.777306 sortedKOIFN2pos.bam
echo sortedKo1IL4pos.bam
/data/results/tools/proton/tophat2unstranded-sampled-pair-bigwig1.sh sortedKo1IL4pos.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.723706 sortedKo2IL4pos.bam