#~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT  -o wt01_R1_trm.fastq.gz -p wt01_R2_trm.fastq.gz    /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.002.Index_10.wt01_R1.fastq.gz  /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.002.Index_10.wt01_R2.fastq.gz
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o wt02_R1_trm.fastq.gz -p wt02_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.002.Index_11.wt02_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.002.Index_11.wt02_R2.fastq.gz &> wt02_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o KO01_R1_trm.fastq.gz -p KO01_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.002.Index_12.KO01_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.002.Index_12.KO01_R2.fastq.gz &> KO01_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o KO02_R1_trm.fastq.gz -p KO02_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.002.Index_13.KO02_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.002.Index_13.KO02_R2.fastq.gz &> KO02_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o wt21_R1_trm.fastq.gz -p wt21_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.003.Index_14.wt21_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.003.Index_14.wt21_R2.fastq.gz &> wt21_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o wt22_R1_trm.fastq.gz -p wt22_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.003.Index_15.wt22_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.003.Index_15.wt22_R2.fastq.gz &> wt22_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o KO21_R1_trm.fastq.gz -p KO21_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.003.Index_16.KO21_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.003.Index_16.KO21_R2.fastq.gz &> KO21_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o KO22_R1_trm.fastq.gz -p KO22_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.003.Index_18.KO22_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.003.Index_18.KO22_R2.fastq.gz &> KO22_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o wt61_R1_trm.fastq.gz -p wt61_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.004.Index_19.wt61_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.004.Index_19.wt61_R2.fastq.gz &> wt61_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o wt62_R1_trm.fastq.gz -p wt62_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.004.Index_20.wt62_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.004.Index_20.wt62_R2.fastq.gz &> wt62_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o KO61_R1_trm.fastq.gz -p KO61_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.004.Index_21.KO61_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.004.Index_21.KO61_R2.fastq.gz &> KO61_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o KO62_R1_trm.fastq.gz -p KO62_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.004.Index_22.KO62_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.004.Index_22.KO62_R2.fastq.gz &> KO62_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o KOIL4_2_R1_trm.fastq.gz -p KOIL4_2_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.005.Index_1.KOIL4_2_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.005.Index_1.KOIL4_2_R2.fastq.gz &> KOIL4_2_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o wtIL4_1_R1_trm.fastq.gz -p wtIL4_1_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.005.Index_23.wtIL4_1_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.005.Index_23.wtIL4_1_R2.fastq.gz &> wtIL4_1_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o wtIL4_2_R1_trm.fastq.gz -p wtIL4_2_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.005.Index_25.wtIL4_2_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.005.Index_25.wtIL4_2_R2.fastq.gz &> wtIL4_2_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o KOIL4_1_R1_trm.fastq.gz -p KOIL4_1_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.005.Index_27.KOIL4_1_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.005.Index_27.KOIL4_1_R2.fastq.gz &> KOIL4_1_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o wtIFN_1_R1_trm.fastq.gz -p wtIFN_1_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.006.Index_2.wtIFN_1_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.006.Index_2.wtIFN_1_R2.fastq.gz &> wtIFN_1_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o wtIFN_2_R1_trm.fastq.gz -p wtIFN_2_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.006.Index_3.wtIFN_2_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.006.Index_3.wtIFN_2_R2.fastq.gz &> wtIFN_2_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o KOIFN_1_R1_trm.fastq.gz -p KOIFN_1_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.006.Index_4.KOIFN_1_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.006.Index_4.KOIFN_1_R2.fastq.gz &> KOIFN_1_R1_trm.log
~/.local/bin/cutadapt -j 16  -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT -o KOIFN_2_R1_trm.fastq.gz -p KOIFN_2_R2_trm.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.006.Index_5.KOIFN_2_R1.fastq.gz /mnt/max/b/genomics_facility/DKlab/mr/rnaseq/RNA_Seq/HI.1370.006.Index_5.KOIFN_2_R2.fastq.gz &> KOIFN_2_R1_trm.log