PARCLIP_suite v1.0

To install suite unarchive zip file into desired directory with command 
 
tar -xvf parclip_suite_v1.tar.gz

To add humane reference enter PARCLIP_suite directory and unzip Human_transcriptome_reference.tar.gz archive.
It should create 'Human_transcriptome_reference' subdirectory with bowtie 1 formatted databases and configuration 
file for this database. This configuration file should be used for this database and sample dataaset.
Configuration file can be copied and adjusted to use alternative hierarhies of annotation or other databases. 

Sample dataset with finale results are in test.tar.gz archive. 
