/data/results/tools/adapter/cutadapt-1.9.1/bin/cutadapt  -q 20 -z -m 15 -c -a CGCCTTGGCCGTACAGCAG 0hrep1/ugc_604_1_F3.csfasta 0hrep1/ugc_604_1_F3.QV.qual &> 0hrep1-q20-m15.log > 0hrep1-q20-m15.fastq
/data/results/tools/adapter/cutadapt-1.9.1/bin/cutadapt  -q 20 -z -m 15 -c -a CGCCTTGGCCGTACAGCAG 0hrep2/ugc_604_4_F3.csfasta 0hrep2/ugc_604_4_F3.QV.qual &> 0hrep2-q20-m15.log > 0hrep2-q20-m15.fastq
/data/results/tools/adapter/cutadapt-1.9.1/bin/cutadapt  -q 20 -z -m 15 -c -a CGCCTTGGCCGTACAGCAG 0hrep3/ugc_604_7_F3.csfasta 0hrep3/ugc_604_7_F3.QV.qual &> 0hrep3-q20-m15.log > 0hrep3-q20-m15.fastq
/data/results/tools/adapter/cutadapt-1.9.1/bin/cutadapt  -q 20 -z -m 15 -c -a CGCCTTGGCCGTACAGCAG 2hrep1/ugc_604_2_F3.csfasta 2hrep1/ugc_604_2_F3.QV.qual &> 2hrep1-q20-m15.log > 2hrep1-q20-m15.fastq
/data/results/tools/adapter/cutadapt-1.9.1/bin/cutadapt  -q 20 -z -m 15 -c -a CGCCTTGGCCGTACAGCAG 2hrep2/ugc_604_5_F3.csfasta 2hrep2/ugc_604_5_F3.QV.qual &> 2hrep2-q20-m15.log > 2hrep2-q20-m15.fastq
/data/results/tools/adapter/cutadapt-1.9.1/bin/cutadapt  -q 20 -z -m 15 -c -a CGCCTTGGCCGTACAGCAG 2hrep3/ugc_604_8_F3.csfasta 2hrep3/ugc_604_8_F3.QV.qual &> 2hrep3-q20-m15.log > 2hrep3-q20-m15.fastq
/data/results/tools/adapter/cutadapt-1.9.1/bin/cutadapt  -q 20 -z -m 15 -c -a CGCCTTGGCCGTACAGCAG 6hrep1/ugc_604_3_F3.csfasta 6hrep1/ugc_604_3_F3.QV.qual &> 6hrep1-q20-m15.log > 6hrep1-q20-m15.fastq
/data/results/tools/adapter/cutadapt-1.9.1/bin/cutadapt  -q 20 -z -m 15 -c -a CGCCTTGGCCGTACAGCAG 6hrep2/ugc_604_6_F3.csfasta 6hrep2/ugc_604_6_F3.QV.qual &> 6hrep2-q20-m15.log > 6hrep2-q20-m15.fastq
/data/results/tools/adapter/cutadapt-1.9.1/bin/cutadapt  -q 20 -z -m 15 -c -a CGCCTTGGCCGTACAGCAG 6hrep3/ugc_604_9_F3.csfasta 6hrep3/ugc_604_9_F3.QV.qual &> 6hrep3-q20-m15.log > 6hrep3-q20-m15.fastq
/data/results/tools/adapter/cutadapt-1.9.1/bin/cutadapt  -q 20 -z -m 15 -c -a CGCCTTGGCCGTACAGCAG IFN/ugc_604_10_F3.csfasta   IFN/ugc_604_10_F3.QV.qual &> IFN-q20-m15.log > IFN-q20-m15.fastq
/data/results/tools/adapter/cutadapt-1.9.1/bin/cutadapt  -q 20 -z -m 15 -c -a CGCCTTGGCCGTACAGCAG IGG/ugc_604_12_F3.csfasta   IGG/ugc_604_12_F3.QV.qual &> IGG-q20-m15.log > IGG-q20-m15.fastq
#/data/results/tools/adapter/cutadapt-1.9.1/bin/cutadapt -q 20 -z -m 15 -c -a CGCCTTGGCCGTACAGCAG IL4/ugc_604_11_F3.csfasta IL4/ugc_604_11_F3.QV.qual >& IL4-q20-m15.log > IL4-q20-m15.fastq

awk -f /data/results/tools/formats/fastq2fasta.awk IL4-q25-m15.fastq  > IL4-q25-m15.fa

awk -f /data/results/tools/formats/fastq2fasta.awk IGG-q20-m15.fastq > IGG-q20-m15.fa
awk -f /data/results/tools/formats/fastq2fasta.awk 0hrep1-q20-m15.fastq > 0hrep1-q20-m15.fa
awk -f /data/results/tools/formats/fastq2fasta.awk 0hrep2-q20-m15.fastq > 0hrep2-q20-m15.fa
awk -f /data/results/tools/formats/fastq2fasta.awk 0hrep3-q20-m15.fastq > 0hrep3-q20-m15.fa
awk -f /data/results/tools/formats/fastq2fasta.awk 2hrep1-q20-m15.fastq > 2hrep1-q20-m15.fa
awk -f /data/results/tools/formats/fastq2fasta.awk 2hrep2-q20-m15.fastq > 2hrep2-q20-m15.fa
awk -f /data/results/tools/formats/fastq2fasta.awk 2hrep3-q20-m15.fastq > 2hrep3-q20-m15.fa
awk -f /data/results/tools/formats/fastq2fasta.awk 6hrep1-q20-m15.fastq > 6hrep1-q20-m15.fa
awk -f /data/results/tools/formats/fastq2fasta.awk 6hrep2-q20-m15.fastq > 6hrep2-q20-m15.fa
awk -f /data/results/tools/formats/fastq2fasta.awk 6hrep3-q20-m15.fastq > 6hrep3-q20-m15.fa
awk -f /data/results/tools/formats/fastq2fasta.awk IFN-q20-m15.fastq > IFN-q20-m15.fa