![[ICO]](/icons/blank.gif){kind=icon}
![[PARENTDIR]](/icons/back.gif){kind=icon}
![[DIR]](/icons/folder.gif){kind=icon}
![[TXT]](/icons/text.gif){kind=icon}
| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| 000-fixme-cleanup/ | 2017-09-25 15:25 | - | |
| 001-fixme-multi_with_config/ | 2017-09-25 15:25 | - | |
| abspath_preserve/ | 2017-09-25 15:25 | - | |
| accompanies/ | 2017-09-25 15:25 | - | |
| alias/ | 2017-09-25 15:25 | - | |
| alias_cleanup/ | 2017-09-25 15:25 | - | |
| alias_produce/ | 2017-09-25 15:25 | - | |
| append_output_dir/ | 2017-09-25 15:25 | - | |
| background/ | 2017-09-25 15:25 | - | |
| backtick/ | 2017-09-25 15:25 | - | |
| bed/ | 2017-09-25 15:25 | - | |
| branch_dir/ | 2017-09-25 15:25 | - | |
| branch_dir_from_input/ | 2017-09-25 15:25 | - | |
| branch_input_before_original/ | 2017-09-25 15:25 | - | |
| branch_load/ | 2017-09-25 15:25 | - | |
| branch_variable/ | 2017-09-25 15:25 | - | |
| branch_variable_as_param/ | 2017-09-25 15:25 | - | |
| branch_variable_output/ | 2017-09-25 15:25 | - | |
| branch_variable_override_default_param/ | 2017-09-25 15:25 | - | |
| check/ | 2017-09-25 15:25 | - | |
| check_fail_issue_102/ | 2017-09-25 15:25 | - | |
| check_no_otherwise/ | 2017-09-25 15:25 | - | |
| check_with_send_report/ | 2017-09-25 15:25 | - | |
| chr_in_nested/ | 2017-09-25 15:25 | - | |
| chr_region/ | 2017-09-25 15:25 | - | |
| clean.sh | 2017-09-25 15:25 | 297 | |
| cleanup_in_pipeline/ | 2017-09-25 15:25 | - | |
| cleanup_multi/ | 2017-09-25 15:25 | - | |
| cleanup_output_dir/ | 2017-09-25 15:25 | - | |
| cleanup_output_from_ext/ | 2017-09-25 15:25 | - | |
| cmd_line_load/ | 2017-09-25 15:25 | - | |
| cmdlinevars/ | 2017-09-25 15:25 | - | |
| consecutive_parallel/ | 2017-09-25 15:25 | - | |
| custom_chr/ | 2017-09-25 15:25 | - | |
| define/ | 2017-09-25 15:25 | - | |
| dependent_modules/ | 2017-09-25 15:25 | - | |
| documentation/ | 2017-09-25 15:25 | - | |
| double_check/ | 2017-09-25 15:25 | - | |
| double_input_ext/ | 2017-09-25 15:25 | - | |
| double_parallel/ | 2017-09-25 15:25 | - | |
| downstream_multiinputs/ | 2017-09-25 15:25 | - | |
| embedded_config/ | 2017-09-25 15:25 | - | |
| empty_parallel_segment/ | 2017-09-25 15:25 | - | |
| equal_timestamps_cleanup/ | 2017-09-25 15:25 | - | |
| extensions/ | 2017-09-25 15:25 | - | |
| external_error/ | 2017-09-25 15:25 | - | |
| external_segment/ | 2017-09-25 15:25 | - | |
| externalstages/ | 2017-09-25 15:25 | - | |
| filter/ | 2017-09-25 15:25 | - | |
| filter_annot_with_diff_input/ | 2017-09-25 15:25 | - | |
| filter_input_ext/ | 2017-09-25 15:25 | - | |
| filter_inputs_from_rel_path/ | 2017-09-25 15:25 | - | |
| filter_multi/ | 2017-09-25 15:25 | - | |
| filter_multi_prior_input/ | 2017-09-25 15:25 | - | |
| filter_multiple_ext_match/ | 2017-09-25 15:25 | - | |
| filter_on_prev_input/ | 2017-09-25 15:25 | - | |
| filter_output_second_input/ | 2017-09-25 15:25 | - | |
| filter_two_same_type/ | 2017-09-25 15:25 | - | |
| filter_uses_correct_base_for_output/ | 2017-09-25 15:25 | - | |
| filterlines/ | 2017-09-25 15:25 | - | |
| folderasoutput/ | 2017-09-25 15:25 | - | |
| forward/ | 2017-09-25 15:25 | - | |
| forward_multi/ | 2017-09-25 15:25 | - | |
| forward_multi_inputs/ | 2017-09-25 15:25 | - | |
| from/ | 2017-09-25 15:25 | - | |
| from_2_matches/ | 2017-09-25 15:25 | - | |
| from_downstream_in_parallel/ | 2017-09-25 15:25 | - | |
| from_filter_chain/ | 2017-09-25 15:25 | - | |
| from_list/ | 2017-09-25 15:25 | - | |
| from_multiple_types/ | 2017-09-25 15:25 | - | |
| from_plus_prior_input/ | 2017-09-25 15:25 | - | |
| from_transform_to/ | 2017-09-25 15:25 | - | |
| from_with_filter_different_input/ | 2017-09-25 15:25 | - | |
| from_with_output_func/ | 2017-09-25 15:25 | - | |
| glob/ | 2017-09-25 15:25 | - | |
| huge_nested_parallel/ | 2017-09-25 15:25 | - | |
| huge_parallel/ | 2017-09-25 15:25 | - | |
| implicitmultioutput/ | 2017-09-25 15:25 | - | |
| innocuous_output_dir_ref/ | 2017-09-25 15:25 | - | |
| input_double_ext_matching_output/ | 2017-09-25 15:25 | - | |
| input_ext_with_number/ | 2017-09-25 15:25 | - | |
| inputext_ext_overlap/ | 2017-09-25 15:25 | - | |
| inputextmulti/ | 2017-09-25 15:25 | - | |
| inputextmulti2/ | 2017-09-25 15:25 | - | |
| intermediate/ | 2017-09-25 15:25 | - | |
| large_number_files/ | 2017-09-25 15:25 | - | |
| load/ | 2017-09-25 15:25 | - | |
| load_in_stage/ | 2017-09-25 15:25 | - | |
| load_relative_to_pipeline_file_dir/ | 2017-09-25 15:25 | - | |
| manual_resolve/ | 2017-09-25 15:25 | - | |
| maxmem/ | 2017-09-25 15:25 | - | |
| memory_variable/ | 2017-09-25 15:25 | - | |
| mid_pipeline_split/ | 2017-09-25 15:25 | - | |
| middle_parallel_no_inputs/ | 2017-09-25 15:25 | - | |
| multi/ | 2017-09-25 15:25 | - | |
| multi_computed/ | 2017-09-25 15:25 | - | |
| multi_deps/ | 2017-09-25 15:25 | - | |
| multi_input_split/ | 2017-09-25 15:25 | - | |
| multiplesplitgroups/ | 2017-09-25 15:25 | - | |
| nested_parallel/ | 2017-09-25 15:25 | - | |
| nested_parallel_low_concur/ | 2017-09-25 15:25 | - | |
| ordered_input_to_parallel/ | 2017-09-25 15:25 | - | |
| outdir_with_following_input/ | 2017-09-25 15:25 | - | |
| output_branch_report/ | 2017-09-25 15:25 | - | |
| output_directly_as_string/ | 2017-09-25 15:25 | - | |
| output_double_ext/ | 2017-09-25 15:25 | - | |
| output_ext_multi_outputs/ | 2017-09-25 15:25 | - | |
| output_ext_override_filter/ | 2017-09-25 15:25 | - | |
| output_ext_with_number/ | 2017-09-25 15:25 | - | |
| output_from_prior_nested_stage/ | 2017-09-25 15:25 | - | |
| output_func/ | 2017-09-25 15:25 | - | |
| output_in_check/ | 2017-09-25 15:25 | - | |
| output_input_not_same/ | 2017-09-25 15:25 | - | |
| output_with_index_ext_and_produce/ | 2017-09-25 15:25 | - | |
| outputdir_exttx/ | 2017-09-25 15:25 | - | |
| outputext/ | 2017-09-25 15:25 | - | |
| outputext2/ | 2017-09-25 15:25 | - | |
| outputextsame/ | 2017-09-25 15:25 | - | |
| outputfolder/ | 2017-09-25 15:25 | - | |
| outputfolder_in_stage/ | 2017-09-25 15:25 | - | |
| outputs_from_diff_parallel_stages/ | 2017-09-25 15:25 | - | |
| paired_end/ | 2017-09-25 15:25 | - | |
| parallel/ | 2017-09-25 15:25 | - | |
| parallel_input_ext_original_inputs/ | 2017-09-25 15:25 | - | |
| parallel_only/ | 2017-09-25 15:25 | - | |
| parallel_parallel/ | 2017-09-25 15:25 | - | |
| parallel_same_stage_outputs/ | 2017-09-25 15:25 | - | |
| parallel_start/ | 2017-09-25 15:25 | - | |
| param/ | 2017-09-25 15:25 | - | |
| param_chr_override/ | 2017-09-25 15:25 | - | |
| param_nested_parallel/ | 2017-09-25 15:25 | - | |
| params_from_file/ | 2017-09-25 15:25 | - | |
| parent_branch_variable/ | 2017-09-25 15:25 | - | |
| per_chromosome_pure_input_output_ext/ | 2017-09-25 15:25 | - | |
| per_generic_list/ | 2017-09-25 15:25 | - | |
| perchromosome/ | 2017-09-25 15:25 | - | |
| perchromosome_filterinputs/ | 2017-09-25 15:25 | - | |
| persample/ | 2017-09-25 15:25 | - | |
| persample2/ | 2017-09-25 15:25 | - | |
| persample_inputotherdir/ | 2017-09-25 15:25 | - | |
| persamplefrom/ | 2017-09-25 15:25 | - | |
| persampleinputext/ | 2017-09-25 15:25 | - | |
| persamplenofiles/ | 2017-09-25 15:25 | - | |
| persampletransform/ | 2017-09-25 15:25 | - | |
| pipeline_require/ | 2017-09-25 15:25 | - | |
| preallocate/ | 2017-09-25 15:25 | - | |
| prechrinput/ | 2017-09-25 15:25 | - | |
| prefix/ | 2017-09-25 15:25 | - | |
| preserve_multi/ | 2017-09-25 15:25 | - | |
| produce/ | 2017-09-25 15:25 | - | |
| produce_and_numbered_double_ext/ | 2017-09-25 15:25 | - | |
| produce_and_output_function/ | 2017-09-25 15:25 | - | |
| produce_and_output_function_no_output_ref/ | 2017-09-25 15:25 | - | |
| produce_existing/ | 2017-09-25 15:25 | - | |
| produce_glob/ | 2017-09-25 15:25 | - | |
| produce_glob_outputdir/ | 2017-09-25 15:25 | - | |
| produce_glob_regex/ | 2017-09-25 15:25 | - | |
| produce_multi/ | 2017-09-25 15:25 | - | |
| produce_not_found_as_input/ | 2017-09-25 15:25 | - | |
| produce_one_dir_one_not/ | 2017-09-25 15:25 | - | |
| produce_out_of_date_inferred_inputs/ | 2017-09-25 15:25 | - | |
| produce_override_output_dir/ | 2017-09-25 15:25 | - | |
| produce_to_dir_no_output_ref/ | 2017-09-25 15:25 | - | |
| produce_twodoubleext/ | 2017-09-25 15:25 | - | |
| produce_wildcard_with_explicit_outputdir/ | 2017-09-25 15:25 | - | |
| produce_wildcard_with_set_outputdir/ | 2017-09-25 15:25 | - | |
| query_with_outputdir/ | 2017-09-25 15:25 | - | |
| ref_local_in_external/ | 2017-09-25 15:25 | - | |
| reference_loaded_before_run/ | 2017-09-25 15:25 | - | |
| region_as_bed/ | 2017-09-25 15:25 | - | |
| remake/ | 2017-09-25 15:25 | - | |
| replace_segment/ | 2017-09-25 15:25 | - | |
| require_with_using/ | 2017-09-25 15:25 | - | |
| resource_limit/ | 2017-09-25 15:25 | - | |
| rscript/ | 2017-09-25 15:25 | - | |
| run.sh | 2017-09-25 15:25 | 580 | |
| segment/ | 2017-09-25 15:25 | - | |
| segment_lib_after_load/ | 2017-09-25 15:25 | - | |
| send_to_file/ | 2017-09-25 15:25 | - | |
| set_branch_name/ | 2017-09-25 15:25 | - | |
| sge/ | 2017-09-25 15:25 | - | |
| simple/ | 2017-09-25 15:25 | - | |
| simpleinputoutput/ | 2017-09-25 15:25 | - | |
| single_input_with_number/ | 2017-09-25 15:25 | - | |
| slow/ | 2017-09-25 15:25 | - | |
| split_2chars/ | 2017-09-25 15:25 | - | |
| split_on_2_file_types/ | 2017-09-25 15:25 | - | |
| split_on_map_in_branch/ | 2017-09-25 15:25 | - | |
| split_outputdir/ | 2017-09-25 15:25 | - | |
| split_regex_pattern/ | 2017-09-25 15:25 | - | |
| split_regions/ | 2017-09-25 15:25 | - | |
| succeed/ | 2017-09-25 15:25 | - | |
| testsupport.sh | 2017-09-25 15:25 | 1.1K | |
| thread_division/ | 2017-09-25 15:25 | - | |
| thread_variable/ | 2017-09-25 15:25 | - | |
| torque_procs/ | 2017-09-25 15:25 | - | |
| transform/ | 2017-09-25 15:25 | - | |
| transform_multi/ | 2017-09-25 15:25 | - | |
| transform_multiple_ext_match/ | 2017-09-25 15:25 | - | |
| transform_one_to_one_multi/ | 2017-09-25 15:25 | - | |
| transform_one_to_two/ | 2017-09-25 15:25 | - | |
| transform_to/ | 2017-09-25 15:25 | - | |
| transform_to_double_ext/ | 2017-09-25 15:25 | - | |
| two_inputs_double_ext/ | 2017-09-25 15:25 | - | |
| using_and_not_using/ | 2017-09-25 15:25 | - | |
| using_override_global/ | 2017-09-25 15:25 | - | |
| using_with_default/ | 2017-09-25 15:25 | - | |
| using_with_dynamic_load/ | 2017-09-25 15:25 | - | |
| whole_input_is_extension/ | 2017-09-25 15:25 | - | |
| withconfig/ | 2017-09-25 15:25 | - | |