Summary Stats,test
Reads,6361864(100%)
Filtered Total,38416(0.60%)
Quality,19208(0.30%)
Length <20 nts,19208(0.30%)
3' Adapter,19208(0.30%)
5' Adapter,19208(0.30%)
19 nt Marker,19208(0.30%)
24 nt Marker,19208(0.30%)
Post-Processing,6323448(99.40%)
Uniquely Aligned Reads,622484(9.84%)
Clusters,144
Groups,5625

Reads Level,Total,T2C Fraction,Conv Spec,G Fraction,Red Seq Fraction,Red Copy Fraction
3'utr,26239,0.14,-0.30,0.41,0.26,0.82
3'utr-intron,2,0.00,0.00,0.50,0.00,0.00
5'utr,639,0.04,-1.31,0.36,0.18,0.59
5'utr-intron,12,0.08,-1.08,0.67,0.25,0.50
Mt_rRNA,132,0.15,-0.59,0.48,0.22,0.49
Mt_tRNA,43,0.02,-1.38,0.09,0.35,0.65
NoAnnotation,337666,0.07,-0.85,0.38,0.22,0.76
RNA,7,0.29,-0.48,0.14,0.00,0.00
antisense,4356,0.03,-1.05,0.13,0.31,0.83
coding,3021,0.11,-0.84,0.31,0.20,0.49
coding-intron,164,0.05,-1.23,0.23,0.24,0.65
intron,94861,0.06,-1.09,0.19,0.23,0.74
intron-5'utr,1,0.00,0.00,0.00,0.00,0.00
intron-coding,115,0.08,-1.05,0.27,0.15,0.31
lincRNA_exon,32300,0.04,-0.84,0.57,0.37,0.86
lincRNA_exon-lincRNA_intron,8,0.00,0.00,0.38,0.40,0.62
lincRNA_intron,7241,0.06,-0.80,0.28,0.28,0.80
lincRNA_intron-lincRNA_exon,7,0.29,-0.40,0.57,0.20,0.43
miRNA,5884,0.04,-0.96,0.35,0.37,0.85
misc_RNA,458,0.16,-0.30,0.31,0.25,0.56
nonsense_mediated_decay,326,0.19,-0.60,0.23,0.23,0.54
processed_pseudogene,199,0.11,-0.62,0.28,0.17,0.38
processed_transcript,1393,0.18,-0.60,0.17,0.19,0.52
pseudogene,27,0.48,0.11,0.19,0.26,0.48
rRNA,7523,0.07,-1.01,0.02,0.37,0.95
repeat,96559,0.09,-0.79,0.19,0.23,0.72
retained_intron,1483,0.32,-0.04,0.70,0.29,0.84
scRNA,4,0.50,0.00,0.00,0.00,0.00
sense_intronic,1,0.00,0.00,0.00,0.00,0.00
sense_overlapping,61,0.02,-1.64,0.44,0.32,0.75
snRNA,434,0.18,-0.11,0.24,0.25,0.55
snoRNA,740,0.06,-1.03,0.23,0.30,0.65
srpRNA,10,0.00,0.00,0.00,0.12,0.30
start_codon,359,0.02,-0.77,0.06,0.29,0.91
stop_codon,38,0.34,-0.16,0.18,0.12,0.21
tRNA,4,0.00,0.00,0.00,0.33,0.50
transcribed_processed_pseudogene,4,0.50,0.00,0.25,0.00,0.00
transcribed_unprocessed_pseudogene,6,0.17,-0.78,0.17,0.00,0.00
unitary_pseudogene,4,0.00,0.00,0.00,0.33,0.50
unprocessed_pseudogene,153,0.03,-1.55,0.37,0.27,0.65

Cluster Level,Total,T2C Fraction,Conv Spec,G Fraction,Red Seq Fraction,Red Copy Fraction
3'utr,63,0.87,0.76,0.13,0.31,0.50
3'utr-intron,0,-,-,-,-,-
5'utr,1,0.80,0.60,0.80,0.33,0.60
5'utr-intron,0,-,-,-,-,-
Mt_rRNA,0,-,-,-,-,-
Mt_tRNA,0,-,-,-,-,-
NoAnnotation,47,0.87,0.85,0.15,0.51,0.73
RNA,0,-,-,-,-,-
antisense,0,-,-,-,-,-
coding,1,0.73,0.90,0.00,0.67,0.82
coding-intron,0,-,-,-,-,-
intron,14,0.85,0.85,0.16,0.55,0.78
intron-5'utr,0,-,-,-,-,-
intron-coding,0,-,-,-,-,-
lincRNA_exon,0,-,-,-,-,-
lincRNA_exon-lincRNA_intron,0,-,-,-,-,-
lincRNA_intron,0,-,-,-,-,-
lincRNA_intron-lincRNA_exon,0,-,-,-,-,-
miRNA,0,-,-,-,-,-
misc_RNA,0,-,-,-,-,-
nonsense_mediated_decay,1,0.79,0.69,0.77,0.40,0.72
processed_pseudogene,0,-,-,-,-,-
processed_transcript,0,-,-,-,-,-
pseudogene,0,-,-,-,-,-
rRNA,0,-,-,-,-,-
repeat,16,0.82,0.76,0.31,0.39,0.68
retained_intron,0,-,-,-,-,-
scRNA,0,-,-,-,-,-
sense_intronic,0,-,-,-,-,-
sense_overlapping,0,-,-,-,-,-
snRNA,1,0.88,1.15,0.00,1.00,1.00
snoRNA,0,-,-,-,-,-
srpRNA,0,-,-,-,-,-
start_codon,0,-,-,-,-,-
stop_codon,0,-,-,-,-,-
tRNA,0,-,-,-,-,-
transcribed_processed_pseudogene,0,-,-,-,-,-
transcribed_unprocessed_pseudogene,0,-,-,-,-,-
unitary_pseudogene,0,-,-,-,-,-
unprocessed_pseudogene,0,-,-,-,-,-

Group Level,Total,T2C Fraction,Conv Spec,G Fraction,Red Seq Fraction,Red Copy Fraction
3'utr,277,0.53,0.25,0.09,0.33,0.50
3'utr-intron,0,-,-,-,-,-
5'utr,15,0.05,0.04,0.46,0.56,0.81
5'utr-intron,0,-,-,-,-,-
Mt_rRNA,10,0.15,-0.13,0.41,0.28,0.48
Mt_tRNA,1,0.02,-1.36,0.10,0.36,0.67
NoAnnotation,3012,0.09,-0.10,0.19,0.64,0.83
RNA,0,-,-,-,-,-
antisense,15,0.12,-0.06,0.14,0.54,0.79
coding,52,0.08,-0.02,0.29,0.68,0.80
coding-intron,3,0.00,0.00,0.07,0.33,0.60
intron,916,0.10,-0.06,0.20,0.68,0.86
intron-5'utr,0,-,-,-,-,-
intron-coding,3,0.21,0.03,0.33,0.61,0.81
lincRNA_exon,4,0.23,-0.36,0.29,0.43,0.88
lincRNA_exon-lincRNA_intron,0,-,-,-,-,-
lincRNA_intron,40,0.08,-0.24,0.23,0.55,0.81
lincRNA_intron-lincRNA_exon,0,-,-,-,-,-
miRNA,103,0.05,-0.28,0.17,0.44,0.76
misc_RNA,21,0.15,-0.05,0.31,0.28,0.53
nonsense_mediated_decay,8,0.14,0.04,0.22,0.76,0.91
processed_pseudogene,2,0.00,0.00,0.00,0.83,0.92
processed_transcript,27,0.09,-0.06,0.26,0.61,0.78
pseudogene,1,0.64,0.35,0.00,0.18,0.36
rRNA,21,0.04,-0.31,0.08,0.35,0.71
repeat,1014,0.09,-0.09,0.19,0.65,0.84
retained_intron,7,0.09,0.04,0.33,0.61,0.86
scRNA,0,-,-,-,-,-
sense_intronic,0,-,-,-,-,-
sense_overlapping,2,0.00,0.00,0.50,1.00,1.00
snRNA,27,0.24,0.03,0.20,0.38,0.58
snoRNA,37,0.08,-0.04,0.29,0.47,0.68
srpRNA,0,-,-,-,-,-
start_codon,2,0.01,-0.23,0.01,0.52,0.91
stop_codon,2,0.61,0.09,0.00,0.21,0.34
tRNA,0,-,-,-,-,-
transcribed_processed_pseudogene,0,-,-,-,-,-
transcribed_unprocessed_pseudogene,0,-,-,-,-,-
unitary_pseudogene,0,-,-,-,-,-
unprocessed_pseudogene,3,0.00,0.00,0.31,0.86,0.94