Summary Stats,test Reads,6361864(100%) Filtered Total,38416(0.60%) Quality,19208(0.30%) Length <20 nts,19208(0.30%) 3' Adapter,19208(0.30%) 5' Adapter,19208(0.30%) 19 nt Marker,19208(0.30%) 24 nt Marker,19208(0.30%) Post-Processing,6323448(99.40%) Uniquely Aligned Reads,776872(12.29%) Clusters,1619 Groups,5623 Reads Level,Total,T2C Fraction,Conv Spec,G Fraction,Red Seq Fraction,Red Copy Fraction 3'utr,36763,0.78,1.16,0.12,0.21,0.42 3'utr-intron,7,0.43,-0.12,0.14,0.00,0.00 3prime_overlapping_ncrna,4,0.25,-0.48,0.50,0.00,0.00 5'utr,957,0.28,-0.18,0.18,0.17,0.40 5'utr-intron,14,0.21,-0.43,0.29,0.18,0.36 Mt_rRNA,888,0.11,-0.21,0.59,0.31,0.69 Mt_tRNA,294,0.04,-0.81,0.22,0.26,0.53 NoAnnotation,295787,0.08,-0.62,0.54,0.23,0.78 RNA,125,0.04,-0.64,0.38,0.25,0.58 antisense,2965,0.23,-0.41,0.12,0.17,0.43 coding,6160,0.22,0.02,0.31,0.17,0.34 coding-intron,204,0.12,-0.73,0.34,0.18,0.57 intron,56343,0.45,0.07,0.13,0.16,0.40 intron-3'utr,6,0.17,-0.70,0.50,0.00,0.00 intron-5'utr,19,0.42,0.20,0.58,0.27,0.42 intron-coding,298,0.57,0.41,0.17,0.13,0.58 lincRNA_exon,1014,0.60,0.53,0.12,0.20,0.43 lincRNA_exon-lincRNA_intron,6,0.33,-0.40,0.00,0.25,0.50 lincRNA_intron,6711,0.18,-0.46,0.09,0.18,0.51 lincRNA_intron-lincRNA_exon,7,0.43,-0.12,0.14,0.17,0.29 miRNA,2683,0.04,-0.80,0.09,0.36,0.79 misc_RNA,60,0.12,-0.11,0.13,0.23,0.43 nonsense_mediated_decay,469,0.60,0.43,0.12,0.15,0.30 polymorphic_pseudogene,2,0.00,0.00,0.00,0.00,0.00 processed_pseudogene,914,0.19,-0.29,0.25,0.16,0.41 processed_transcript,2806,0.46,0.10,0.12,0.16,0.38 protein_coding,1,0.00,0.00,0.00,0.00,0.00 pseudogene,78,0.28,0.30,0.45,0.20,0.42 rRNA,329090,0.03,-0.87,0.62,0.40,0.92 repeat,24562,0.18,-0.50,0.13,0.17,0.41 retained_intron,213,0.49,0.18,0.15,0.15,0.33 scRNA,147,0.07,-0.39,0.27,0.24,0.51 sense_intronic,18,0.11,-0.81,0.11,0.12,0.22 sense_overlapping,331,0.54,0.22,0.04,0.18,0.40 snRNA,913,0.13,-0.13,0.25,0.24,0.54 snoRNA,1785,0.04,-0.64,0.21,0.26,0.56 srpRNA,91,0.12,-0.10,0.10,0.18,0.46 start_codon,141,0.11,-0.29,0.22,0.20,0.55 stop_codon,369,0.65,0.67,0.25,0.24,0.56 tRNA,3112,0.06,-0.85,0.33,0.26,0.64 transcribed_processed_pseudogene,7,0.43,0.00,0.43,0.00,0.00 transcribed_unprocessed_pseudogene,89,0.54,0.22,0.15,0.12,0.28 unitary_pseudogene,16,0.38,-0.07,0.06,0.14,0.25 unprocessed_pseudogene,403,0.32,-0.07,0.32,0.16,0.34 Cluster Level,Total,T2C Fraction,Conv Spec,G Fraction,Red Seq Fraction,Red Copy Fraction 3'utr,1089,0.87,0.88,0.10,0.31,0.48 3'utr-intron,0,-,-,-,-,- 3prime_overlapping_ncrna,0,-,-,-,-,- 5'utr,8,0.77,0.87,0.03,0.35,0.48 5'utr-intron,0,-,-,-,-,- Mt_rRNA,0,-,-,-,-,- Mt_tRNA,0,-,-,-,-,- NoAnnotation,208,0.87,0.82,0.11,0.35,0.53 RNA,0,-,-,-,-,- antisense,6,0.96,0.84,0.05,0.56,0.65 coding,23,0.80,0.74,0.23,0.32,0.47 coding-intron,1,1.00,0.70,0.00,0.25,0.40 intron,177,0.89,0.83,0.10,0.33,0.49 intron-3'utr,0,-,-,-,-,- intron-5'utr,0,-,-,-,-,- intron-coding,0,-,-,-,-,- lincRNA_exon,17,0.84,0.82,0.08,0.30,0.50 lincRNA_exon-lincRNA_intron,0,-,-,-,-,- lincRNA_intron,7,0.89,0.75,0.06,0.49,0.58 lincRNA_intron-lincRNA_exon,0,-,-,-,-,- miRNA,0,-,-,-,-,- misc_RNA,0,-,-,-,-,- nonsense_mediated_decay,5,0.89,0.87,0.00,0.33,0.51 polymorphic_pseudogene,0,-,-,-,-,- processed_pseudogene,2,1.00,0.95,0.00,0.42,0.76 processed_transcript,22,0.87,0.86,0.12,0.32,0.49 protein_coding,0,-,-,-,-,- pseudogene,1,1.00,0.95,0.44,0.29,0.44 rRNA,2,0.82,0.83,0.53,0.46,0.81 repeat,35,0.86,0.86,0.05,0.31,0.47 retained_intron,0,-,-,-,-,- scRNA,0,-,-,-,-,- sense_intronic,0,-,-,-,-,- sense_overlapping,6,0.93,0.91,0.10,0.37,0.60 snRNA,1,0.79,0.92,0.05,0.38,0.76 snoRNA,0,-,-,-,-,- srpRNA,0,-,-,-,-,- start_codon,0,-,-,-,-,- stop_codon,6,0.88,1.00,0.33,0.31,0.49 tRNA,0,-,-,-,-,- transcribed_processed_pseudogene,0,-,-,-,-,- transcribed_unprocessed_pseudogene,0,-,-,-,-,- unitary_pseudogene,0,-,-,-,-,- unprocessed_pseudogene,3,0.87,0.63,0.00,0.53,0.67 Group Level,Total,T2C Fraction,Conv Spec,G Fraction,Red Seq Fraction,Red Copy Fraction 3'utr,1526,0.80,0.75,0.10,0.33,0.50 3'utr-intron,0,-,-,-,-,- 3prime_overlapping_ncrna,0,-,-,-,-,- 5'utr,18,0.46,0.47,0.05,0.45,0.67 5'utr-intron,1,1.00,0.70,0.00,0.33,0.60 Mt_rRNA,22,0.09,-0.22,0.50,0.33,0.59 Mt_tRNA,13,0.04,-0.29,0.20,0.23,0.41 NoAnnotation,1671,0.23,0.11,0.16,0.63,0.81 RNA,8,0.02,-0.04,0.37,0.41,0.69 antisense,54,0.16,0.06,0.16,0.68,0.85 coding,103,0.34,0.22,0.35,0.48,0.64 coding-intron,6,0.23,0.12,0.19,0.37,0.49 intron,772,0.37,0.27,0.14,0.58,0.75 intron-3'utr,0,-,-,-,-,- intron-5'utr,0,-,-,-,-,- intron-coding,3,0.33,0.70,0.17,0.63,0.83 lincRNA_exon,29,0.66,0.61,0.10,0.38,0.59 lincRNA_exon-lincRNA_intron,0,-,-,-,-,- lincRNA_intron,104,0.19,0.05,0.10,0.60,0.77 lincRNA_intron-lincRNA_exon,0,-,-,-,-,- miRNA,99,0.04,-0.22,0.11,0.43,0.73 misc_RNA,4,0.07,0.00,0.09,0.45,0.60 nonsense_mediated_decay,9,0.84,0.78,0.11,0.43,0.61 polymorphic_pseudogene,0,-,-,-,-,- processed_pseudogene,20,0.13,0.02,0.17,0.46,0.72 processed_transcript,54,0.48,0.41,0.09,0.45,0.66 protein_coding,0,-,-,-,-,- pseudogene,2,0.50,0.48,0.56,0.37,0.62 rRNA,330,0.08,-0.50,0.31,0.38,0.71 repeat,467,0.17,0.11,0.14,0.64,0.81 retained_intron,4,0.55,0.43,0.05,0.40,0.55 scRNA,7,0.04,-0.23,0.44,0.62,0.76 sense_intronic,0,-,-,-,-,- sense_overlapping,9,0.73,0.71,0.06,0.48,0.70 snRNA,33,0.16,-0.10,0.21,0.33,0.57 snoRNA,106,0.04,-0.12,0.24,0.38,0.62 srpRNA,3,0.13,0.00,0.06,0.19,0.38 start_codon,1,0.04,-0.30,0.00,0.35,0.88 stop_codon,10,0.72,0.70,0.21,0.31,0.46 tRNA,119,0.06,-0.24,0.36,0.36,0.57 transcribed_processed_pseudogene,0,-,-,-,-,- transcribed_unprocessed_pseudogene,3,0.62,0.41,0.00,0.61,0.85 unitary_pseudogene,0,-,-,-,-,- unprocessed_pseudogene,13,0.27,0.17,0.45,0.66,0.80