PARAMETER values:
-----------------
feature_cols_to_extract = []
use_groups = "no"
fudge = 1.0
filter_params = {"TranscriptLocation"=>"3UTR", "ConversionEventCount"=>"2", "FilterType"=>"NA"}
clusters_file = "data/AGO_EbR_5deep.csv"
out_features_file = "features"
out_dir = "data/AGO_EbR_5deep/"
log_transform = true
data_sub_dir = "data/"
out_params_file = "parms_PARCLIP_input_processing"
out_evidence_file = "evidence"
out_sequence_file = "seq"
strand_specific_analysis = "true"
