echo "IGG.1kIntrons2-log2-1"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron2/sh.IGG.ini &> IGG.1kIntrons2-log2
./mergeMyPar-100chunks.sh sh-clusters-IGG.txt2-1kIntrons2
wc -l sh-clusters-IGG.txt2-1kIntrons2.csv
./mergeMyPar-100chunks.sh sh-groups-IGG.txt2-1kIntrons2
./mergeMyPar-100chunks.sh sh-distributions-IGG.txt2-1kIntrons2

echo "IL4.1kIntrons2-log2-1"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron2/sh.IL4.ini &> IL4.1kIntrons2-log2
./mergeMyPar-100chunks.sh sh-clusters-IL4.txt2-1kIntrons2
wc -l sh-clusters-IL4.txt2-1kIntrons2.csv
./mergeMyPar-100chunks.sh sh-groups-IL4.txt2-1kIntrons2
./mergeMyPar-100chunks.sh sh-distributions-IL4.txt2-1kIntrons2

#r7
echo "0hrep2.1kIntrons2-log2-1"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron2/sh.0hrep2.ini &> 0hrep2.1kIntrons2-log2
./mergeMyPar-100chunks.sh sh-clusters-0hrep2.txt2-1kIntrons2
mv sh-clusters-0hrep2.txt2.csv sh-clusters-0hrep2.txt2-1kIntrons2.csv
wc -l sh-clusters-0hrep2.txt2-1kIntrons2.csv
./mergeMyPar-100chunks.sh sh-groups-0hrep2.txt2-1kIntrons2
mv sh-groups-0hrep2.txt2.csv sh-groups-0hrep2.txt2-1kIntrons2.csv
./mergeMyPar-100chunks.sh sh-distributions-0hrep2.txt2-1kIntrons2
mv sh-distributions-0hrep2.txt2.csv sh-distributions-0hrep2.txt2-1kIntrons2

#r8
echo "0hrep3.1kIntrons2-log2-1"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron2/sh.0hrep3.ini &> 0hrep3.1kIntrons2-log2
./mergeMyPar-100chunks.sh sh-clusters-0hrep3.txt2-1kIntrons2
#mv  sh-clusters-0hrep3.txt2.csv  sh-clusters-0hrep3.txt2-1kIntrons2.csv
wc -l sh-clusters-0hrep3.txt2-1kIntrons2.csv
./mergeMyPar-100chunks.sh sh-groups-0hrep3.txt2-1kIntrons2
#mv sh-groups-0hrep3.txt2.csv sh-groups-0hrep3.txt2-1kIntrons2.csv
./mergeMyPar-100chunks.sh sh-distributions-0hrep3.txt2-1kIntrons2
#mv sh-distributions-0hrep3.txt2.csv sh-distributions-0hrep3.txt2-1kIntrons2.csv

#r1
echo "6hrep2.1kIntrons2-log2-1"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron2/sh.6hrep2.ini &> 6hrep2.1kIntrons2-log2
./mergeMyPar-100chunks.sh sh-clusters-6hrep2.txt2
mv  sh-clusters-6hrep2.txt2.csv  sh-clusters-6hrep2.txt2-1kIntrons2.csv
wc -l sh-clusters-6hrep2.txt2-1kIntrons2.csv
./mergeMyPar-100chunks.sh sh-groups-6hrep2.txt2-1kIntrons2
mv  sh-groups-6hrep2.txt2.csv  sh-groups-6hrep2.txt2-1kIntrons2.csv
./mergeMyPar-100chunks.sh sh-distributions-6hrep2.txt2-1kIntrons2
mv sh-distributions-6hrep2.txt2.csv sh-distributions-6hrep2.txt2-1kIntrons2.csv


echo "6hrep3.1kIntrons2-log2-1"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron2/sh.6hrep3.ini &> 6hrep3.1kIntrons2-log2
./mergeMyPar-100chunks.sh sh-clusters-6hrep3.txt2
mv sh-clusters-6hrep3.txt2.csv sh-clusters-6hrep3.txt2-1kIntrons2.csv
wc -l sh-clusters-6hrep3.txt2-1kIntrons2.csv
./mergeMyPar-100chunks.sh sh-groups-6hrep3.txt2
mv sh-groups-6hrep3.txt2.csv sh-groups-6hrep3.txt2-1kIntrons2.csv
./mergeMyPar-100chunks.sh sh-distributions-6hrep3.txt2
mv sh-distributions-6hrep3.txt2.csv sh-distributions-6hrep3.txt2-1kIntrons2.csv 

#r9
echo "2hrep1.1kIntrons2-log2-1"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron2/sh.2hrep1.ini &> 2hrep1.1kIntrons2-log2
./mergeMyPar-100chunks.sh sh-clusters-2hrep1.txt2-1kIntrons2
wc -l sh-clusters-2hrep1.txt2-1kIntrons2.csv
./mergeMyPar-100chunks.sh sh-groups-2hrep1.txt2-1kIntrons2
./mergeMyPar-100chunks.sh sh-distributions-2hrep1.txt2-1kIntrons2

#r0
echo "2hrep2.1kIntrons2-log2-1"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron2/sh.2hrep2.ini &> 2hrep2.1kIntrons2-log2
./mergeMyPar-100chunks.sh sh-clusters-2hrep2.txt2-1kIntrons2
wc -l sh-clusters-2hrep2.txt2-1kIntrons2.csv
./mergeMyPar-100chunks.sh sh-groups-2hrep2.txt2-1kIntrons2
./mergeMyPar-100chunks.sh sh-distributions-2hrep2.txt2-1kIntrons2

#r4
echo "2hrep3.1kIntrons2-log2-1"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron2/sh.2hrep3.ini &> 2hrep3.1kIntrons2-log2
./mergeMyPar-100chunks.sh sh-clusters-2hrep3.txt2-1kIntrons2
wc -l sh-clusters-2hrep3.txt2-1kIntrons2.csv
./mergeMyPar-100chunks.sh sh-groups-2hrep3.txt2-1kIntrons2
./mergeMyPar-100chunks.sh sh-distributions-2hrep3.txt2-1kIntrons2

#
echo "0h.1kIntrons2-log2-1"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron2/sh.0h.ini &> 0h.1kIntrons2-log2
./mergeMyPar-100chunks.sh sh-clusters-0h.txt2-1kIntrons2
wc -l sh-clusters-0h.txt2-1kIntrons2.csv
./mergeMyPar-100chunks.sh sh-groups-0h.txt2-1kIntrons2
./mergeMyPar-100chunks.sh sh-distributions-0h.txt2-1kIntrons2