#echo "IFN.1kIntrons-log2-1"
#./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.IFN.ini-1 &> IFN.1kIntrons-log2-1
#./mergeMyPar-100chunks.sh sh-clusters-IFN.txt2-1kIntrons-1
#wc -l sh-clusters-IFN.txt2-1kIntrons-1
#./mergeMyPar-100chunks.sh sh-groups-IFN.txt2-1kIntrons-1
#./mergeMyPar-100chunks.sh sh-distributions-IFN.txt2-1kIntrons-1

#echo "IFN.1kIntrons-log2-2"
#./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.IFN.ini-2 &> IFN.1kIntrons-log2-2
#./mergeMyPar-100chunks.sh sh-clusters-IFN.txt2-1kIntrons-2
#wc -l sh-clusters-IFN.txt2-1kIntrons-2.csv
#./mergeMyPar-100chunks.sh sh-groups-IFN.txt2-1kIntrons-2
#./mergeMyPar-100chunks.sh sh-distributions-IFN.txt2-1kIntrons-2

#echo "IFN.1kIntrons-log2-3"
#./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.IFN.ini-3 &> IFN.1kIntrons-log2-3
#./mergeMyPar-100chunks.sh sh-clusters-IFN.txt2-1kIntrons-3
#wc -l sh-clusters-IFN.txt2-1kIntrons-3.csv
#./mergeMyPar-100chunks.sh sh-groups-IFN.txt2-1kIntrons-3
#./mergeMyPar-100chunks.sh sh-distributions-IFN.txt2-1kIntrons-3

echo "IFN.1kIntrons-log2-4"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.IFN.ini-4 &> IFN.1kIntrons-log2-4
./mergeMyPar-100chunks.sh sh-clusters-IFN.txt2-1kIntrons-4
wc -l sh-clusters-IFN.txt2-1kIntrons-4.csv
./mergeMyPar-100chunks.sh sh-groups-IFN.txt2-1kIntrons-4
./mergeMyPar-100chunks.sh sh-distributions-IFN.txt2-1kIntrons-4

echo "IFN.1kIntrons-log2-5"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.IFN.ini-5 &> IFN.1kIntrons-log2-5
./mergeMyPar-100chunks.sh sh-clusters-IFN.txt2-1kIntrons-5
wc -l sh-clusters-IFN.txt2-1kIntrons-5.csv
./mergeMyPar-100chunks.sh sh-groups-IFN.txt2-1kIntrons-5
./mergeMyPar-100chunks.sh sh-distributions-IFN.txt2-1kIntrons-5

echo "IFN.1kIntrons-log2-6"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.IFN.ini-6 &> IFN.1kIntrons-log2-6
./mergeMyPar-100chunks.sh sh-clusters-IFN.txt2-1kIntrons-6
wc -l sh-clusters-IFN.txt2-1kIntrons-6.csv
./mergeMyPar-100chunks.sh sh-groups-IFN.txt2-1kIntrons-6
./mergeMyPar-100chunks.sh sh-distributions-IFN.txt2-1kIntrons-6

echo "IFN.1kIntrons-log2-7"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.IFN.ini-7 &> IFN.1kIntrons-log2-7
./mergeMyPar-100chunks.sh sh-clusters-IFN.txt2-1kIntrons-7
wc -l sh-clusters-IFN.txt2-1kIntrons-7.csv
./mergeMyPar-100chunks.sh sh-groups-IFN.txt2-1kIntrons-7
./mergeMyPar-100chunks.sh sh-distributions-IFN.txt2-1kIntrons-7

echo "IFN.1kIntrons-log2-8"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.IFN.ini-8 &> IFN.1kIntrons-log2-8
./mergeMyPar-100chunks.sh sh-clusters-IFN.txt2-1kIntrons-8
wc -l sh-clusters-IFN.txt2-1kIntrons-8.csv
./mergeMyPar-100chunks.sh sh-groups-IFN.txt2-1kIntrons-8
./mergeMyPar-100chunks.sh sh-distributions-IFN.txt2-1kIntrons-8

#echo "IFN.1kIntrons-log2-9"
#./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.IFN.ini-9 &> IFN.1kIntrons-log2-9
#./mergeMyPar-100chunks.sh sh-clusters-IFN.txt2-1kIntrons-9
#wc -l sh-clusters-IFN.txt2-1kIntrons-9.csv
#./mergeMyPar-100chunks.sh sh-groups-IFN.txt2-1kIntrons-9
#./mergeMyPar-100chunks.sh sh-distributions-IFN.txt2-1kIntrons-9

echo "IFN.1kIntrons-log2-9"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.IFN.ini &> IFN.1kIntrons-log2
./mergeMyPar-100chunks.sh sh-clusters-IFN.txt2-1kIntrons
wc -l sh-clusters-IFN.txt2-1kIntrons.csv
./mergeMyPar-100chunks.sh sh-groups-IFN.txt2-1kIntrons
./mergeMyPar-100chunks.sh sh-distributions-IFN.txt2-1kIntrons

#./mergeMyPar-100chunks.sh sh-clusters-IFN.txt2-1kIntrons

for i in sh-clu*IFN*-?.csv
do
    echo $i
    awk -v th=0.9 -f /data/images/proton/DKlab/mr/parclip/paralyzer/filter_csv_modescore1.awk $i | wc -l
done