echo "6hrep1.1kIntrons-log2-1"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.6hrep1.ini-1 &> 6hrep1.1kIntrons-log2-1
./mergeMyPar-100chunks.sh sh-clusters-6hrep1.txt2-1kIntrons-1
wc -l sh-clusters-6hrep1.txt2-1kIntrons-1
./mergeMyPar-100chunks.sh sh-groups-6hrep1.txt2-1kIntrons-1
./mergeMyPar-100chunks.sh sh-distributions-6hrep1.txt2-1kIntrons-1

echo "6hrep1.1kIntrons-log2-2"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.6hrep1.ini-2 &> 6hrep1.1kIntrons-log2-2
./mergeMyPar-100chunks.sh sh-clusters-6hrep1.txt2-1kIntrons-2
wc -l sh-clusters-6hrep1.txt2-1kIntrons-2.csv
./mergeMyPar-100chunks.sh sh-groups-6hrep1.txt2-1kIntrons-2
./mergeMyPar-100chunks.sh sh-distributions-6hrep1.txt2-1kIntrons-2

echo "6hrep1.1kIntrons-log2-3"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.6hrep1.ini-3 &> 6hrep1.1kIntrons-log2-3
./mergeMyPar-100chunks.sh sh-clusters-6hrep1.txt2-1kIntrons-3
wc -l sh-clusters-6hrep1.txt2-1kIntrons-3.csv
./mergeMyPar-100chunks.sh sh-groups-6hrep1.txt2-1kIntrons-3
./mergeMyPar-100chunks.sh sh-distributions-6hrep1.txt2-1kIntrons-3

echo "6hrep1.1kIntrons-log2-4"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.6hrep1.ini-4 &> 6hrep1.1kIntrons-log2-4
./mergeMyPar-100chunks.sh sh-clusters-6hrep1.txt2-1kIntrons-4
wc -l sh-clusters-6hrep1.txt2-1kIntrons-4.csv
./mergeMyPar-100chunks.sh sh-groups-6hrep1.txt2-1kIntrons-4
./mergeMyPar-100chunks.sh sh-distributions-6hrep1.txt2-1kIntrons-4

echo "6hrep1.1kIntrons-log2-5"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.6hrep1.ini-5 &> 6hrep1.1kIntrons-log2-5
./mergeMyPar-100chunks.sh sh-clusters-6hrep1.txt2-1kIntrons-5
wc -l sh-clusters-6hrep1.txt2-1kIntrons-5.csv
./mergeMyPar-100chunks.sh sh-groups-6hrep1.txt2-1kIntrons-5
./mergeMyPar-100chunks.sh sh-distributions-6hrep1.txt2-1kIntrons-5

echo "6hrep1.1kIntrons-log2-6"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.6hrep1.ini-6 &> 6hrep1.1kIntrons-log2-6
./mergeMyPar-100chunks.sh sh-clusters-6hrep1.txt2-1kIntrons-6
wc -l sh-clusters-6hrep1.txt2-1kIntrons-6.csv
./mergeMyPar-100chunks.sh sh-groups-6hrep1.txt2-1kIntrons-6
./mergeMyPar-100chunks.sh sh-distributions-6hrep1.txt2-1kIntrons-6

echo "6hrep1.1kIntrons-log2-7"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.6hrep1.ini-7 &> 6hrep1.1kIntrons-log2-7
./mergeMyPar-100chunks.sh sh-clusters-6hrep1.txt2-1kIntrons-7
wc -l sh-clusters-6hrep1.txt2-1kIntrons-7.csv
./mergeMyPar-100chunks.sh sh-groups-6hrep1.txt2-1kIntrons-7
./mergeMyPar-100chunks.sh sh-distributions-6hrep1.txt2-1kIntrons-7

echo "6hrep1.1kIntrons-log2-8"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.6hrep1.ini-8 &> 6hrep1.1kIntrons-log2-8
./mergeMyPar-100chunks.sh sh-clusters-6hrep1.txt2-1kIntrons-8
wc -l sh-clusters-6hrep1.txt2-1kIntrons-8.csv
./mergeMyPar-100chunks.sh sh-groups-6hrep1.txt2-1kIntrons-8
./mergeMyPar-100chunks.sh sh-distributions-6hrep1.txt2-1kIntrons-8

echo "6hrep1.1kIntrons-log2-9"
./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.6hrep1.ini-9 &> 6hrep1.1kIntrons-log2-9
./mergeMyPar-100chunks.sh sh-clusters-6hrep1.txt2-1kIntrons-9
wc -l sh-clusters-6hrep1.txt2-1kIntrons-9.csv
./mergeMyPar-100chunks.sh sh-groups-6hrep1.txt2-1kIntrons-9
./mergeMyPar-100chunks.sh sh-distributions-6hrep1.txt2-1kIntrons-9

#./mergeMyPar-100chunks.sh sh-clusters-6hrep1.txt2-1kIntrons

./myp-100chunks.sh /data/images/proton/DKlab/mr/parclip/paralyzer/ini-files-1kIntron/sh.6hrep1.ini &> 6hrep1.1kIntrons-log2
./mergeMyPar-100chunks.sh sh-clusters-6hrep1.txt2-1kIntrons
wc -l sh-clusters-6hrep1.txt2-1kIntrons
./mergeMyPar-100chunks.sh sh-groups-6hrep1.txt2-1kIntrons
./mergeMyPar-100chunks.sh sh-distributions-6hrep1.txt2-1kIntrons




for i in sh-clu*6hrep1*-?.csv
do
    echo $i
    awk -v th=0.9 -f /data/images/proton/DKlab/mr/parclip/paralyzer/filter_csv_modescore1.awk $i | wc -l
done