Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000163904-chr14-+-79826406-79827200 l44 e 0 nr 1000000 chr ENSMUST00000132009-chr6-+-120349100-120349600 l45 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1161174 reads mapping to 424823 Unique genomic coordinates Making up 11588 groups Consisting of 4341 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000075280-chr19---41998578-41999201 l44 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 825368 reads mapping to 419748 Unique genomic coordinates Making up 11574 groups Consisting of 4284 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000040248-chr16---15902502-15903002 l44 e 2 nr 1000000 chr ENSMUST00000034928-chr9---66883302-66883802 l43 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1039763 reads mapping to 452878 Unique genomic coordinates Making up 12266 groups Consisting of 4583 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000135904-chr2---73606303-73606803 l43 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 920871 reads mapping to 421916 Unique genomic coordinates Making up 11425 groups Consisting of 4254 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000117346-chr19---10071704-10072204 l44 e 4 nr 1000000 chr ENSMUST00000038472-chrX---108702304-108702804 l45 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1005792 reads mapping to 443080 Unique genomic coordinates Making up 12282 groups Consisting of 4616 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000091884-chr18---61331036-61331805 l44 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 916001 reads mapping to 444861 Unique genomic coordinates Making up 12195 groups Consisting of 4477 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114913-chr16-+-35272306-35272806 l44 e 6 nr 1000000 chr ENSMUST00000026555-chr7-+-148036275-148036606 l45 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1093580 reads mapping to 434444 Unique genomic coordinates Making up 11805 groups Consisting of 4338 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000001921-chr3---20128207-20128707 l43 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 891411 reads mapping to 434130 Unique genomic coordinates Making up 11796 groups Consisting of 4365 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000036069-chr19---23447908-23448408 l44 e 8 nr 1000000 chr ENSMUST00000088451-chrX---70479789-70479908 l43 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1010606 reads mapping to 446505 Unique genomic coordinates Making up 12016 groups Consisting of 4560 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000035648-chr18---46894163-46894909 l44 e 9 nr 1000000 chr ENSMUST00000130691-chr9-+-81536309-81536809 l43 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1038363 reads mapping to 438801 Unique genomic coordinates Making up 12149 groups Consisting of 4440 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000109379-chr13---100821510-100822010 l46 e 10 nr 1000000 chr ENSMUST00000030112-chr4-+-40111810-40112310 l43 e 10 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1382370 reads mapping to 454589 Unique genomic coordinates Making up 12456 groups Consisting of 4818 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000134728-chr2-+-130184011-130184511 l45 e 11 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 912010 reads mapping to 437652 Unique genomic coordinates Making up 12046 groups Consisting of 4532 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000166783-chr18---61971112-61971612 l44 e 12 nr 1000000 chr ENSMUST00000164283-chr8---113716112-113716612 l45 e 12 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1080511 reads mapping to 461833 Unique genomic coordinates Making up 12595 groups Consisting of 4752 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000137280-chr2-+-149656813-149657313 l45 e 13 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 888401 reads mapping to 438873 Unique genomic coordinates Making up 11990 groups Consisting of 4484 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000067048-chr15-+-28241106-28241914 l44 e 14 nr 1000000 chr ENSMUST00000162273-chr6---77550814-77551314 l43 e 14 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1234574 reads mapping to 441687 Unique genomic coordinates Making up 12025 groups Consisting of 4460 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000047122-chr16---16341160-16341515 l44 e 15 nr 1000000 chr ENSMUST00000140466-chr9---7005615-7006115 l41 e 15 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1086171 reads mapping to 427838 Unique genomic coordinates Making up 11480 groups Consisting of 4309 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000121808-chr18---12914816-12915316 l44 e 16 nr 1000000 chr ENSMUST00000159159-chr3-+-137949916-137950416 l45 e 16 nr 1500000 chr ENSMUST00000156540-chr6---52175616-52176116 l43 e 16 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1743404 reads mapping to 442537 Unique genomic coordinates Making up 11874 groups Consisting of 4532 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000087265-chr19---38025417-38025917 l44 e 17 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 944928 reads mapping to 433576 Unique genomic coordinates Making up 11895 groups Consisting of 4618 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167215-chr19---4281080-4281918 l42 e 18 nr 1000000 chr ENSMUST00000030696-chr4---132457223-132457918 l45 e 18 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1334020 reads mapping to 433981 Unique genomic coordinates Making up 11805 groups Consisting of 4398 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114715-chr2---14919919-14920419 l43 e 19 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 935261 reads mapping to 448433 Unique genomic coordinates Making up 12119 groups Consisting of 4439 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025144-chr17---33097020-33097520 l44 e 20 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 948682 reads mapping to 429141 Unique genomic coordinates Making up 11702 groups Consisting of 4389 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025833-chr19-+-32713821-32714321 l44 e 21 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 953625 reads mapping to 425132 Unique genomic coordinates Making up 11546 groups Consisting of 4372 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000111441-chr2-+-90897217-90897922 l43 e 22 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 910530 reads mapping to 442809 Unique genomic coordinates Making up 12114 groups Consisting of 4477 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165749-chr18-+-85134323-85134823 l44 e 23 nr 1000000 chr ENSMUST00000163426-chr8---112669623-112670123 l45 e 23 nr 1500000 chr ENSMUST00000075578-chr8---126478475-126478623 l45 e 23 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1627380 reads mapping to 449327 Unique genomic coordinates Making up 12176 groups Consisting of 4598 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000000199-chr2-+-31136324-31136824 l43 e 24 nr 1000000 chr ENSMUST00000049263-chr9-+-70436924-70437424 l43 e 24 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1041862 reads mapping to 448972 Unique genomic coordinates Making up 12179 groups Consisting of 4636 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000146993-chr15-+-88842625-88843125 l44 e 25 nr 1000000 chr ENSMUST00000108840-chr8-+-125906501-125907225 l45 e 25 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1090746 reads mapping to 453939 Unique genomic coordinates Making up 12340 groups Consisting of 4623 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000151957-chr19-+-4108867-4109826 l42 e 26 nr 1000000 chr ENSMUST00000163643-chr8---74905388-74906226 l43 e 26 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1060116 reads mapping to 438208 Unique genomic coordinates Making up 11990 groups Consisting of 4464 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000162657-chr19---47835474-47836127 l44 e 27 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 998011 reads mapping to 448111 Unique genomic coordinates Making up 12091 groups Consisting of 4570 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000024866-chr17---74265628-74266128 l44 e 28 nr 1000000 chr ENSMUST00000036555-chr9-+-75116828-75117328 l43 e 28 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1042688 reads mapping to 447381 Unique genomic coordinates Making up 11927 groups Consisting of 4455 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000096053-chr19-+-45023629-45024129 l44 e 29 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 930563 reads mapping to 437485 Unique genomic coordinates Making up 11736 groups Consisting of 4531 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000128168-chr16---66731130-66731630 l44 e 30 nr 1000000 chr ENSMUST00000129342-chr4---129393430-129393930 l45 e 30 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1260527 reads mapping to 449963 Unique genomic coordinates Making up 12262 groups Consisting of 4569 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000115840-chr18-+-21238431-21238931 l44 e 31 nr 1000000 chr ENSMUST00000028233-chr2---34894231-34894731 l43 e 31 nr 1500000 chr ENSMUST00000122947-chr4-+-148853832-148854531 l45 e 31 nr 2000000 chr ENSMUST00000072634-chr9---30979631-30980131 l43 e 31 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2095252 reads mapping to 446814 Unique genomic coordinates Making up 12128 groups Consisting of 4555 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000063292-chr15---101629846-101630332 l46 e 32 nr 1000000 chr ENSMUST00000032931-chr7-+-108424632-108425132 l45 e 32 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1107598 reads mapping to 445356 Unique genomic coordinates Making up 12135 groups Consisting of 4531 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000154196-chr16-+-94688602-94689533 l44 e 33 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 997806 reads mapping to 428952 Unique genomic coordinates Making up 11760 groups Consisting of 4323 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000051258-chr17-+-56787234-56787734 l44 e 34 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 978653 reads mapping to 441636 Unique genomic coordinates Making up 12019 groups Consisting of 4595 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000073418-chr15---76014535-76015035 l44 e 35 nr 1000000 chr ENSMUST00000148175-chr7---52341535-52342035 l43 e 35 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1123647 reads mapping to 433395 Unique genomic coordinates Making up 11733 groups Consisting of 4349 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000142554-chr2-+-31634736-31635236 l43 e 36 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 948137 reads mapping to 432144 Unique genomic coordinates Making up 11948 groups Consisting of 4389 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000062609-chr13-+-21575237-21575737 l44 e 37 nr 1000000 chr ENSMUST00000045054-chr6---42623637-42624137 l43 e 37 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1205702 reads mapping to 442528 Unique genomic coordinates Making up 11924 groups Consisting of 4542 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000173261-chr18-+-10557438-10557938 l44 e 38 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 934267 reads mapping to 435619 Unique genomic coordinates Making up 11777 groups Consisting of 4395 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161305-chr15-+-76257039-76257539 l44 e 39 nr 1000000 chr ENSMUST00000046993-chr7---127175639-127176139 l45 e 39 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1139339 reads mapping to 450323 Unique genomic coordinates Making up 12343 groups Consisting of 4581 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000096053-chr19-+-45005940-45006440 l44 e 40 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 884732 reads mapping to 437639 Unique genomic coordinates Making up 12007 groups Consisting of 4485 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000040489-chr19-+-18958441-18958941 l44 e 41 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 904395 reads mapping to 449394 Unique genomic coordinates Making up 12280 groups Consisting of 4625 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022618-chr14---66692942-66693442 l44 e 42 nr 1000000 chr ENSMUST00000036807-chr8-+-27271442-27271942 l43 e 42 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1077792 reads mapping to 437551 Unique genomic coordinates Making up 11956 groups Consisting of 4512 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000130184-chr19---46339943-46340443 l44 e 43 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 928607 reads mapping to 449839 Unique genomic coordinates Making up 12078 groups Consisting of 4550 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023612-chr16-+-95935444-95935944 l44 e 44 nr 1000000 chr ENSMUST00000055296-chr6-+-71886544-71887044 l43 e 44 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1139443 reads mapping to 441018 Unique genomic coordinates Making up 11861 groups Consisting of 4539 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114269-chr2-+-25295059-25296045 l43 e 45 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 946879 reads mapping to 441861 Unique genomic coordinates Making up 12345 groups Consisting of 4533 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000173164-chr17---34652646-34653146 l44 e 46 nr 1000000 chr ENSMUST00000107045-chr7---107798546-107799046 l45 e 46 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1108213 reads mapping to 442971 Unique genomic coordinates Making up 12232 groups Consisting of 4573 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000069293-chr1-+-46142547-46143047 l43 e 47 nr 1000000 chr ENSMUST00000136441-chr12---40738047-40738547 l44 e 47 nr 1500000 chr ENSMUST00000026922-chr7---88756272-88757147 l43 e 47 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1628908 reads mapping to 440640 Unique genomic coordinates Making up 11944 groups Consisting of 4394 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000047666-chr19---24889648-24890148 l44 e 48 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 896286 reads mapping to 442554 Unique genomic coordinates Making up 11986 groups Consisting of 4549 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167706-chr10---115930849-115931349 l46 e 49 nr 1000000 chr ENSMUST00000084828-chr12-+-117688349-117688849 l46 e 49 nr 1500000 chr ENSMUST00000085688-chr7-+-31552449-31552949 l43 e 49 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1674598 reads mapping to 442626 Unique genomic coordinates Making up 11947 groups Consisting of 4458 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000070918-chr15-+-31514550-31515050 l44 e 50 nr 1000000 chr ENSMUST00000026538-chr7---147294050-147294550 l45 e 50 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1080632 reads mapping to 437696 Unique genomic coordinates Making up 11952 groups Consisting of 4436 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000125004-chr2-+-23012251-23012751 l43 e 51 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 922210 reads mapping to 427363 Unique genomic coordinates Making up 11707 groups Consisting of 4359 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025482-chr18---64741652-64742152 l44 e 52 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 944758 reads mapping to 457744 Unique genomic coordinates Making up 12526 groups Consisting of 4799 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000112692-chr2-+-51958453-51958953 l43 e 53 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 951882 reads mapping to 438873 Unique genomic coordinates Making up 11939 groups Consisting of 4515 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000095224-chr17-+-56740954-56741454 l44 e 54 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 941381 reads mapping to 450882 Unique genomic coordinates Making up 12180 groups Consisting of 4701 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000041331-chr19---44477155-44477655 l44 e 55 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 975983 reads mapping to 451223 Unique genomic coordinates Making up 12219 groups Consisting of 4668 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000164832-chr17---74715456-74715956 l44 e 56 nr 1000000 chr ENSMUST00000004428-chrX---6739956-6740456 l41 e 56 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1031965 reads mapping to 460468 Unique genomic coordinates Making up 12338 groups Consisting of 4658 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000151910-chr16---37344657-37345157 l44 e 57 nr 1000000 chr ENSMUST00000145273-chr4-+-139036057-139036557 l45 e 57 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1219865 reads mapping to 429939 Unique genomic coordinates Making up 11578 groups Consisting of 4460 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000134749-chr19---40644458-40644958 l44 e 58 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 945771 reads mapping to 441496 Unique genomic coordinates Making up 11983 groups Consisting of 4474 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000171623-chr19-+-29065159-29065659 l44 e 59 nr 1000000 chr ENSMUST00000072292-chrX---45924959-45925459 l43 e 59 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1021491 reads mapping to 438206 Unique genomic coordinates Making up 11859 groups Consisting of 4445 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000169809-chr18---6052360-6052860 l42 e 60 nr 1000000 chr ENSMUST00000125976-chr8-+-115257460-115257960 l45 e 60 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1065278 reads mapping to 435818 Unique genomic coordinates Making up 11901 groups Consisting of 4441 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000088474-chr17-+-24638278-24639061 l44 e 61 nr 1000000 chr ENSMUST00000044598-chrX---9776161-9776661 l41 e 61 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1022240 reads mapping to 453402 Unique genomic coordinates Making up 12024 groups Consisting of 4595 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000035721-chr2---4558262-4558762 l41 e 62 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 958451 reads mapping to 444679 Unique genomic coordinates Making up 12154 groups Consisting of 4465 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165110-chr17-+-12516763-12517263 l44 e 63 nr 1000000 chr ENSMUST00000111827-chr6---142051663-142052163 l45 e 63 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1260741 reads mapping to 442892 Unique genomic coordinates Making up 12031 groups Consisting of 4425 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023678-chr16-+-91821064-91821564 l44 e 64 nr 1000000 chr ENSMUST00000072093-chr9-+-109012246-109012864 l45 e 64 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1019210 reads mapping to 445195 Unique genomic coordinates Making up 12055 groups Consisting of 4449 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000028362-chr2---60155865-60156365 l43 e 65 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 878706 reads mapping to 432411 Unique genomic coordinates Making up 11814 groups Consisting of 4443 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000012587-chr19-+-37483466-37483966 l44 e 66 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 866101 reads mapping to 422969 Unique genomic coordinates Making up 11527 groups Consisting of 4254 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000110261-chr15---47780967-47781467 l44 e 67 nr 1000000 chr ENSMUST00000113962-chr6---83001628-83002467 l43 e 67 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1145144 reads mapping to 434222 Unique genomic coordinates Making up 11824 groups Consisting of 4490 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000149383-chr2-+-34262368-34262868 l43 e 68 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 930180 reads mapping to 450480 Unique genomic coordinates Making up 12320 groups Consisting of 4577 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000168680-chr16-+-49196369-49196869 l44 e 69 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 960646 reads mapping to 427599 Unique genomic coordinates Making up 11823 groups Consisting of 4383 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114731-chr2-+-14326070-14326570 l43 e 70 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 936352 reads mapping to 426829 Unique genomic coordinates Making up 11475 groups Consisting of 4232 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000039366-chr17-+-52936871-52937371 l44 e 71 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 980746 reads mapping to 430929 Unique genomic coordinates Making up 11820 groups Consisting of 4329 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000088086-chr2---165941872-165942372 l45 e 72 nr 1000000 chr ENSMUST00000081618-chr7---28758864-28759772 l43 e 72 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1143020 reads mapping to 422316 Unique genomic coordinates Making up 11679 groups Consisting of 4447 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000074371-chr19-+-54003073-54003573 l44 e 73 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 898934 reads mapping to 437428 Unique genomic coordinates Making up 11976 groups Consisting of 4439 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000156187-chr15---83813374-83813874 l44 e 74 nr 1000000 chr ENSMUST00000137098-chr6-+-142309516-142310274 l45 e 74 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1194192 reads mapping to 450494 Unique genomic coordinates Making up 12298 groups Consisting of 4600 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000137557-chr16---44139075-44139575 l44 e 75 nr 1000000 chr ENSMUST00000108759-chr8-+-128913175-128913675 l45 e 75 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1049718 reads mapping to 432958 Unique genomic coordinates Making up 11829 groups Consisting of 4372 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000094346-chr2-+-164442276-164442776 l45 e 76 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 920745 reads mapping to 428348 Unique genomic coordinates Making up 11557 groups Consisting of 4369 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000097643-chr18-+-25362477-25362977 l44 e 77 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 965593 reads mapping to 443418 Unique genomic coordinates Making up 12011 groups Consisting of 4590 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000171623-chr19-+-29086543-29087278 l44 e 78 nr 1000000 chr ENSMUST00000041375-chr9---50704840-50705478 l43 e 78 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1057338 reads mapping to 461542 Unique genomic coordinates Making up 12510 groups Consisting of 4675 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000020529-chr11---23392306-23393279 l44 e 79 nr 1000000 chr ENSMUST00000046426-chr5---121007279-121007779 l45 e 79 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1202567 reads mapping to 439661 Unique genomic coordinates Making up 12189 groups Consisting of 4534 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000018964-chr19-+-42253980-42254480 l44 e 80 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 902957 reads mapping to 431591 Unique genomic coordinates Making up 11884 groups Consisting of 4444 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025965-chr19-+-39019381-39019881 l44 e 81 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 964405 reads mapping to 433429 Unique genomic coordinates Making up 11734 groups Consisting of 4288 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023745-chr15-+-99136082-99136382 l44 e 82 nr 1000000 chr ENSMUST00000087622-chr6-+-140476582-140477082 l45 e 82 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1138147 reads mapping to 436505 Unique genomic coordinates Making up 11839 groups Consisting of 4405 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170156-chr13---11944883-11945383 l44 e 83 nr 1000000 chr ENSMUST00000149137-chr2-+-13241783-13242283 l43 e 83 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1476388 reads mapping to 445893 Unique genomic coordinates Making up 12140 groups Consisting of 4532 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025439-chr18---73932284-73932784 l44 e 84 nr 1000000 chr ENSMUST00000035043-chr9---99405184-99405684 l43 e 84 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1035732 reads mapping to 436928 Unique genomic coordinates Making up 12030 groups Consisting of 4359 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000133661-chr2-+-38196685-38197185 l43 e 85 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 879810 reads mapping to 429443 Unique genomic coordinates Making up 11761 groups Consisting of 4414 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000084966-chr17---13309986-13310486 l44 e 86 nr 1000000 chr ENSMUST00000118133-chr6-+-15203786-15204286 l43 e 86 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1315070 reads mapping to 453934 Unique genomic coordinates Making up 12381 groups Consisting of 4641 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000056102-chr16---96873187-96873687 l44 e 87 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 987455 reads mapping to 451438 Unique genomic coordinates Making up 12209 groups Consisting of 4600 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000143764-chr2-+-82798288-82798788 l43 e 88 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 888512 reads mapping to 451829 Unique genomic coordinates Making up 12313 groups Consisting of 4667 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000152191-chr2-+-118705689-118706189 l45 e 89 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 862682 reads mapping to 434539 Unique genomic coordinates Making up 11832 groups Consisting of 4419 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000159048-chr17---25534790-25535290 l44 e 90 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 936986 reads mapping to 435598 Unique genomic coordinates Making up 11840 groups Consisting of 4531 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000070892-chr18-+-20687591-20688091 l44 e 91 nr 1000000 chr ENSMUST00000086341-chr7-+-24205891-24206391 l43 e 91 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1116129 reads mapping to 454695 Unique genomic coordinates Making up 12316 groups Consisting of 4678 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000050664-chr13-+-13822092-13822592 l44 e 92 nr 1000000 chr ENSMUST00000101436-chr6-+-48504892-48505392 l43 e 92 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1150630 reads mapping to 434568 Unique genomic coordinates Making up 11793 groups Consisting of 4484 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000159036-chr16-+-29611736-29611993 l44 e 93 nr 1000000 chr ENSMUST00000139776-chr8-+-13014893-13015393 l43 e 93 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1124583 reads mapping to 444417 Unique genomic coordinates Making up 12081 groups Consisting of 4559 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000134663-chr18---32119773-32120494 l44 e 94 nr 1000000 chr ENSMUST00000019876-chr8---74966794-74967294 l43 e 94 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1075493 reads mapping to 466856 Unique genomic coordinates Making up 12695 groups Consisting of 4837 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000111448-chr2-+-90852999-90853395 l43 e 95 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 919622 reads mapping to 446888 Unique genomic coordinates Making up 12166 groups Consisting of 4511 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161701-chr18---38349596-38350096 l44 e 96 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 986557 reads mapping to 437347 Unique genomic coordinates Making up 11814 groups Consisting of 4434 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000141617-chr18---33367880-33368697 l44 e 97 nr 1000000 chr ENSMUST00000011392-chr9-+-110717227-110717797 l45 e 97 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1023718 reads mapping to 447376 Unique genomic coordinates Making up 12027 groups Consisting of 4617 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025217-chr18---35105098-35105598 l44 e 98 nr 1000000 chr ENSMUST00000072298-chr2---156774098-156774598 l45 e 98 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1432089 reads mapping to 451413 Unique genomic coordinates Making up 12406 groups Consisting of 4626 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000003313-chr19-+-61145299-61145799 l44 e 99 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 936593 reads mapping to 434979 Unique genomic coordinates Making up 11878 groups Consisting of 4486 clusters