Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000147020-chr15---89136724-89136800 l44 e 0 nr 1000000 chr ENSMUST00000149416-chrX---45560134-45560700 l43 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1015663 reads mapping to 389988 Unique genomic coordinates Making up 10732 groups Consisting of 3941 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000029568-chr3---79628701-79629201 l43 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 726050 reads mapping to 384645 Unique genomic coordinates Making up 10697 groups Consisting of 3910 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000024882-chr17-+-75149902-75150402 l44 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 911948 reads mapping to 415761 Unique genomic coordinates Making up 11294 groups Consisting of 4121 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000038356-chr3-+-89581203-89581703 l43 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 811699 reads mapping to 387306 Unique genomic coordinates Making up 10530 groups Consisting of 3847 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000059452-chr2-+-174529681-174530604 l45 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 885731 reads mapping to 406566 Unique genomic coordinates Making up 11294 groups Consisting of 4165 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000089776-chr2---125396905-125397405 l45 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 805351 reads mapping to 407535 Unique genomic coordinates Making up 11220 groups Consisting of 4066 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000091884-chr18---61293006-61293506 l44 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 956217 reads mapping to 398485 Unique genomic coordinates Making up 10861 groups Consisting of 3919 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000082303-chr4-+-47316807-47317307 l43 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 785748 reads mapping to 398143 Unique genomic coordinates Making up 10898 groups Consisting of 3951 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000148191-chr2-+-155821156-155822008 l45 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 888359 reads mapping to 409722 Unique genomic coordinates Making up 11101 groups Consisting of 4152 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000077458-chr2---32672909-32673409 l43 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 910814 reads mapping to 402303 Unique genomic coordinates Making up 11241 groups Consisting of 4020 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000057695-chr14---31009410-31009910 l44 e 10 nr 1000000 chr ENSMUST00000147801-chr5-+-3571810-3572310 l41 e 10 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1209603 reads mapping to 416965 Unique genomic coordinates Making up 11538 groups Consisting of 4365 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167877-chr3---117503911-117504411 l45 e 11 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 802600 reads mapping to 401539 Unique genomic coordinates Making up 11148 groups Consisting of 4149 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000047521-chr2-+-29726912-29727412 l43 e 12 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 947250 reads mapping to 423558 Unique genomic coordinates Making up 11640 groups Consisting of 4325 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000149903-chr4-+-45957370-45957813 l43 e 13 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 783708 reads mapping to 402505 Unique genomic coordinates Making up 11114 groups Consisting of 4090 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000097423-chr17-+-8144914-8145414 l42 e 14 nr 1000000 chr ENSMUST00000144869-chr9-+-55900214-55900714 l43 e 14 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1073821 reads mapping to 404937 Unique genomic coordinates Making up 11081 groups Consisting of 4047 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000091885-chr18-+-61272515-61273015 l44 e 15 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 949808 reads mapping to 392359 Unique genomic coordinates Making up 10614 groups Consisting of 3908 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000141276-chr2-+-69023016-69023516 l43 e 16 nr 1000000 chr ENSMUST00000159159-chr3-+-137949916-137950416 l45 e 16 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1475245 reads mapping to 405848 Unique genomic coordinates Making up 11024 groups Consisting of 4109 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000127020-chr2---151206617-151207117 l45 e 17 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 830394 reads mapping to 397612 Unique genomic coordinates Making up 11037 groups Consisting of 4178 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000169801-chr2---160544118-160544618 l45 e 18 nr 1000000 chr ENSMUST00000031061-chr5---52543218-52543718 l43 e 18 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1163722 reads mapping to 398400 Unique genomic coordinates Making up 10907 groups Consisting of 3981 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000138175-chr2---178136719-178137419 l45 e 19 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 822158 reads mapping to 410919 Unique genomic coordinates Making up 11224 groups Consisting of 4027 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000050372-chr2-+-37638220-37638720 l43 e 20 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 831841 reads mapping to 393495 Unique genomic coordinates Making up 10846 groups Consisting of 4002 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000126462-chr2---71986221-71986721 l43 e 21 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 839458 reads mapping to 389922 Unique genomic coordinates Making up 10569 groups Consisting of 3939 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000171668-chr3-+-109466722-109467222 l45 e 22 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 802171 reads mapping to 405380 Unique genomic coordinates Making up 11107 groups Consisting of 4069 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000153688-chr2---91005023-91005523 l43 e 23 nr 1000000 chr ENSMUST00000075578-chr8---126478475-126478623 l45 e 23 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1422927 reads mapping to 412155 Unique genomic coordinates Making up 11277 groups Consisting of 4157 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000035860-chr3---40411424-40411924 l43 e 24 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 916013 reads mapping to 411608 Unique genomic coordinates Making up 11228 groups Consisting of 4196 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000112389-chr17---81049925-81050425 l44 e 25 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 952116 reads mapping to 416186 Unique genomic coordinates Making up 11415 groups Consisting of 4209 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000005233-chr2-+-118296669-118297626 l45 e 26 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 929985 reads mapping to 402030 Unique genomic coordinates Making up 11051 groups Consisting of 4059 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000110537-chr2---122133127-122133627 l45 e 27 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 876664 reads mapping to 411121 Unique genomic coordinates Making up 11145 groups Consisting of 4158 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025581-chr19-+-11623128-11623628 l44 e 28 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 916804 reads mapping to 410666 Unique genomic coordinates Making up 11103 groups Consisting of 4083 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000099224-chr2-+-152099929-152100429 l45 e 29 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 818658 reads mapping to 401084 Unique genomic coordinates Making up 10853 groups Consisting of 4091 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000164587-chr19---20454195-20454830 l44 e 30 nr 1000000 chr ENSMUST00000168981-chr7-+-119982430-119982930 l45 e 30 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1089225 reads mapping to 412714 Unique genomic coordinates Making up 11294 groups Consisting of 4155 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000082070-chr18---31402831-31403331 l44 e 31 nr 1000000 chr ENSMUST00000028233-chr2---34894231-34894731 l43 e 31 nr 1500000 chr ENSMUST00000072634-chr9---30979631-30980131 l43 e 31 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1783892 reads mapping to 409839 Unique genomic coordinates Making up 11237 groups Consisting of 4095 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025468-chr18-+-61380732-61381232 l44 e 32 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 970085 reads mapping to 408397 Unique genomic coordinates Making up 11227 groups Consisting of 4113 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000119292-chr19---3279033-3279533 l42 e 33 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 873293 reads mapping to 393181 Unique genomic coordinates Making up 10817 groups Consisting of 3949 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000142786-chr2-+-28940334-28940834 l43 e 34 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 857273 reads mapping to 404898 Unique genomic coordinates Making up 11078 groups Consisting of 4181 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000073418-chr15---76014535-76015035 l44 e 35 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 980031 reads mapping to 397806 Unique genomic coordinates Making up 10830 groups Consisting of 3998 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000016168-chr2-+-158143336-158143836 l45 e 36 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 832370 reads mapping to 396647 Unique genomic coordinates Making up 11058 groups Consisting of 3999 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000039876-chr14---103688837-103689337 l46 e 37 nr 1000000 chr ENSMUST00000035170-chr9---104098437-104098937 l45 e 37 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1052617 reads mapping to 406158 Unique genomic coordinates Making up 11038 groups Consisting of 4131 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000127918-chr2---110944438-110944938 l45 e 38 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 823108 reads mapping to 399239 Unique genomic coordinates Making up 10917 groups Consisting of 4008 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000112498-chr17-+-78750239-78750739 l44 e 39 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 990422 reads mapping to 412863 Unique genomic coordinates Making up 11364 groups Consisting of 4165 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000028821-chr2---118058140-118058640 l45 e 40 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 782333 reads mapping to 401215 Unique genomic coordinates Making up 11116 groups Consisting of 4046 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000028624-chr2---122427741-122428241 l45 e 41 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 798754 reads mapping to 412061 Unique genomic coordinates Making up 11299 groups Consisting of 4203 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000128168-chr16---66771942-66772442 l44 e 42 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 940395 reads mapping to 401167 Unique genomic coordinates Making up 11093 groups Consisting of 4091 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000042246-chr2---125504543-125505043 l45 e 43 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 818060 reads mapping to 412561 Unique genomic coordinates Making up 11126 groups Consisting of 4106 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025083-chr18---6222865-6223544 l42 e 44 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 989713 reads mapping to 404330 Unique genomic coordinates Making up 10988 groups Consisting of 4140 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170598-chr2-+-106197345-106197845 l45 e 45 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 833455 reads mapping to 405341 Unique genomic coordinates Making up 11389 groups Consisting of 4130 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000139454-chr2-+-30117946-30118446 l43 e 46 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 968341 reads mapping to 406305 Unique genomic coordinates Making up 11321 groups Consisting of 4200 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000069293-chr1-+-46142547-46143047 l43 e 47 nr 1000000 chr ENSMUST00000024826-chr17---31278167-31279147 l44 e 47 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1396902 reads mapping to 404204 Unique genomic coordinates Making up 11018 groups Consisting of 4018 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000028633-chr2---125188536-125189348 l45 e 48 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 788605 reads mapping to 405924 Unique genomic coordinates Making up 11042 groups Consisting of 4109 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167706-chr10---115930849-115931349 l46 e 49 nr 1000000 chr ENSMUST00000073466-chr16---91717149-91717649 l44 e 49 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1442362 reads mapping to 405918 Unique genomic coordinates Making up 11066 groups Consisting of 4050 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000042665-chr16---35858850-35859350 l44 e 50 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 949655 reads mapping to 401552 Unique genomic coordinates Making up 11057 groups Consisting of 4050 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000029269-chr3-+-36464218-36464351 l43 e 51 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 805445 reads mapping to 391702 Unique genomic coordinates Making up 10811 groups Consisting of 3975 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000080953-chr2---69334552-69335052 l43 e 52 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 831134 reads mapping to 419715 Unique genomic coordinates Making up 11589 groups Consisting of 4394 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000172673-chr3-+-34529153-34529653 l43 e 53 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 837168 reads mapping to 402714 Unique genomic coordinates Making up 11082 groups Consisting of 4111 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114713-chr2---14963354-14963854 l43 e 54 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 826345 reads mapping to 413516 Unique genomic coordinates Making up 11273 groups Consisting of 4279 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000052550-chr2---42507755-42508255 l43 e 55 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 856385 reads mapping to 413620 Unique genomic coordinates Making up 11264 groups Consisting of 4209 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000036934-chr2---52182294-52182456 l43 e 56 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 908837 reads mapping to 422302 Unique genomic coordinates Making up 11407 groups Consisting of 4243 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167795-chr18---42401057-42401557 l44 e 57 nr 1000000 chr ENSMUST00000033828-chr8---13474157-13474657 l43 e 57 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1061435 reads mapping to 394622 Unique genomic coordinates Making up 10697 groups Consisting of 4052 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000028984-chr2-+-153960758-153961258 l45 e 58 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 832143 reads mapping to 405018 Unique genomic coordinates Making up 11077 groups Consisting of 4034 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000041643-chr2-+-164709929-164710859 l45 e 59 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 894688 reads mapping to 402032 Unique genomic coordinates Making up 10943 groups Consisting of 4006 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000169809-chr18---6052360-6052860 l42 e 60 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 931510 reads mapping to 399914 Unique genomic coordinates Making up 10999 groups Consisting of 4011 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000134749-chr19---40647761-40648261 l44 e 61 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 898273 reads mapping to 415650 Unique genomic coordinates Making up 11115 groups Consisting of 4208 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000120843-chr2---87004162-87004662 l43 e 62 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 841570 reads mapping to 407562 Unique genomic coordinates Making up 11208 groups Consisting of 4064 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025968-chr19-+-39587163-39587663 l44 e 63 nr 1000000 chr ENSMUST00000163062-chr8-+-14962663-14963163 l43 e 63 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1095252 reads mapping to 406232 Unique genomic coordinates Making up 11139 groups Consisting of 4052 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000129608-chr19---29435417-29436364 l44 e 64 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 891519 reads mapping to 408295 Unique genomic coordinates Making up 11089 groups Consisting of 4042 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000144847-chr2-+-166653165-166653665 l45 e 65 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 775231 reads mapping to 396499 Unique genomic coordinates Making up 10965 groups Consisting of 4057 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000134728-chr2-+-130185866-130186366 l45 e 66 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 763511 reads mapping to 388159 Unique genomic coordinates Making up 10644 groups Consisting of 3856 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025129-chr18---7439067-7439567 l42 e 67 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 998493 reads mapping to 398331 Unique genomic coordinates Making up 10935 groups Consisting of 4061 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000028935-chr2-+-148661168-148661668 l45 e 68 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 820782 reads mapping to 413248 Unique genomic coordinates Making up 11353 groups Consisting of 4140 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167136-chr18-+-34460969-34461469 l44 e 69 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 846060 reads mapping to 392257 Unique genomic coordinates Making up 10891 groups Consisting of 3952 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000148465-chr3---35835770-35836270 l43 e 70 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 822780 reads mapping to 391658 Unique genomic coordinates Making up 10611 groups Consisting of 3827 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000112618-chr2-+-57207371-57207871 l43 e 71 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 861899 reads mapping to 395186 Unique genomic coordinates Making up 10925 groups Consisting of 3958 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161577-chr3---132664972-132665472 l45 e 72 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 988496 reads mapping to 387249 Unique genomic coordinates Making up 10725 groups Consisting of 4016 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000028883-chr2---129514973-129515473 l45 e 73 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 790903 reads mapping to 400986 Unique genomic coordinates Making up 11087 groups Consisting of 4022 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000087031-chr17-+-46339974-46340474 l44 e 74 nr 1000000 chr ENSMUST00000034740-chr9-+-72559474-72559974 l43 e 74 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1039275 reads mapping to 413423 Unique genomic coordinates Making up 11382 groups Consisting of 4196 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000162416-chr19---16021275-16021775 l44 e 75 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 920272 reads mapping to 397097 Unique genomic coordinates Making up 10916 groups Consisting of 3994 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000148457-chr4-+-120293278-120294176 l45 e 76 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 807164 reads mapping to 392803 Unique genomic coordinates Making up 10686 groups Consisting of 3982 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000047812-chr2---62183177-62183677 l43 e 77 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 846873 reads mapping to 406668 Unique genomic coordinates Making up 11112 groups Consisting of 4186 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000127724-chr2---131919378-131919878 l45 e 78 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 925005 reads mapping to 423331 Unique genomic coordinates Making up 11569 groups Consisting of 4249 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000110687-chr12---56877779-56878279 l44 e 79 nr 1000000 chr ENSMUST00000034910-chr9---77038190-77038479 l43 e 79 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1052654 reads mapping to 403181 Unique genomic coordinates Making up 11271 groups Consisting of 4105 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000070724-chr2-+-135159180-135159680 l45 e 80 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 795182 reads mapping to 395804 Unique genomic coordinates Making up 10960 groups Consisting of 4013 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000152452-chr2-+-157854781-157855281 l45 e 81 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 847715 reads mapping to 397799 Unique genomic coordinates Making up 10821 groups Consisting of 3927 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023554-chr16---35750082-35750582 l44 e 82 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 996766 reads mapping to 400233 Unique genomic coordinates Making up 10934 groups Consisting of 3991 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170156-chr13---11944883-11945383 l44 e 83 nr 1000000 chr ENSMUST00000132199-chr3-+-121771383-121771883 l45 e 83 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1284395 reads mapping to 409357 Unique genomic coordinates Making up 11257 groups Consisting of 4146 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165767-chr2---128769084-128769584 l45 e 84 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 904740 reads mapping to 400895 Unique genomic coordinates Making up 11157 groups Consisting of 3964 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000040260-chr3-+-116583185-116583685 l45 e 85 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 776050 reads mapping to 394034 Unique genomic coordinates Making up 10913 groups Consisting of 3996 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000125291-chr19---11664686-11665186 l44 e 86 nr 1000000 chr ENSMUST00000110348-chr8---49341686-49342186 l43 e 86 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1142708 reads mapping to 416594 Unique genomic coordinates Making up 11443 groups Consisting of 4205 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000043437-chr18---38119487-38119987 l44 e 87 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 870846 reads mapping to 414364 Unique genomic coordinates Making up 11309 groups Consisting of 4184 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000029451-chr3-+-102538988-102539488 l45 e 88 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 783950 reads mapping to 414323 Unique genomic coordinates Making up 11331 groups Consisting of 4241 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000131133-chr4---19646807-19647289 l43 e 89 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 760195 reads mapping to 398395 Unique genomic coordinates Making up 10900 groups Consisting of 3964 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000086923-chr19---47721768-47722090 l44 e 90 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 824479 reads mapping to 399419 Unique genomic coordinates Making up 10978 groups Consisting of 4141 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000026190-chr19---42672571-42673191 l44 e 91 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 976388 reads mapping to 417122 Unique genomic coordinates Making up 11369 groups Consisting of 4240 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022433-chr14-+-27594992-27595492 l44 e 92 nr 1000000 chr ENSMUST00000143999-chrX---47968692-47969192 l43 e 92 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1013156 reads mapping to 398438 Unique genomic coordinates Making up 10885 groups Consisting of 4103 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000164852-chr18---12352293-12352793 l44 e 93 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 986047 reads mapping to 407519 Unique genomic coordinates Making up 11129 groups Consisting of 4115 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000121586-chr2---70814194-70814694 l43 e 94 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 943099 reads mapping to 428303 Unique genomic coordinates Making up 11774 groups Consisting of 4388 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000107672-chr3-+-85405895-85406395 l43 e 95 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 807560 reads mapping to 409497 Unique genomic coordinates Making up 11209 groups Consisting of 4148 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000011934-chr2---76570696-76571196 l43 e 96 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 865739 reads mapping to 401121 Unique genomic coordinates Making up 10874 groups Consisting of 3993 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000111641-chr2---84614397-84614897 l43 e 97 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 899044 reads mapping to 410714 Unique genomic coordinates Making up 11144 groups Consisting of 4190 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025217-chr18---35105098-35105598 l44 e 98 nr 1000000 chr ENSMUST00000106017-chr4-+-129668798-129669298 l45 e 98 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1241132 reads mapping to 413467 Unique genomic coordinates Making up 11452 groups Consisting of 4192 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000119422-chr2---130567699-130568199 l45 e 99 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 826338 reads mapping to 398878 Unique genomic coordinates Making up 10966 groups Consisting of 4097 clusters