Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 436835 reads mapping to 186270 Unique genomic coordinates Making up 4442 groups Consisting of 1459 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 307458 reads mapping to 181251 Unique genomic coordinates Making up 4510 groups Consisting of 1521 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 389321 reads mapping to 198912 Unique genomic coordinates Making up 4821 groups Consisting of 1551 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 346042 reads mapping to 185048 Unique genomic coordinates Making up 4462 groups Consisting of 1478 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 375924 reads mapping to 192641 Unique genomic coordinates Making up 4695 groups Consisting of 1583 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 347012 reads mapping to 193284 Unique genomic coordinates Making up 4703 groups Consisting of 1575 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 410440 reads mapping to 189529 Unique genomic coordinates Making up 4431 groups Consisting of 1502 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 334596 reads mapping to 188989 Unique genomic coordinates Making up 4640 groups Consisting of 1552 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 385398 reads mapping to 196247 Unique genomic coordinates Making up 4715 groups Consisting of 1657 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 387685 reads mapping to 190956 Unique genomic coordinates Making up 4635 groups Consisting of 1476 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000093812-chr9-+-78552910-78553410 l43 e 10 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 523391 reads mapping to 198956 Unique genomic coordinates Making up 4790 groups Consisting of 1676 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 341119 reads mapping to 189992 Unique genomic coordinates Making up 4623 groups Consisting of 1541 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 406784 reads mapping to 201747 Unique genomic coordinates Making up 4909 groups Consisting of 1654 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 333714 reads mapping to 191524 Unique genomic coordinates Making up 4628 groups Consisting of 1579 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 458757 reads mapping to 194793 Unique genomic coordinates Making up 4627 groups Consisting of 1548 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 405652 reads mapping to 187117 Unique genomic coordinates Making up 4454 groups Consisting of 1483 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000159159-chr3-+-137949916-137950416 l45 e 16 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 650626 reads mapping to 193362 Unique genomic coordinates Making up 4627 groups Consisting of 1573 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 354355 reads mapping to 188959 Unique genomic coordinates Making up 4620 groups Consisting of 1620 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114000-chrX-+-81126118-81126618 l43 e 18 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 503795 reads mapping to 189585 Unique genomic coordinates Making up 4561 groups Consisting of 1522 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 354744 reads mapping to 195340 Unique genomic coordinates Making up 4757 groups Consisting of 1555 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 356287 reads mapping to 186715 Unique genomic coordinates Making up 4491 groups Consisting of 1522 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 360831 reads mapping to 185788 Unique genomic coordinates Making up 4484 groups Consisting of 1535 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 341491 reads mapping to 191818 Unique genomic coordinates Making up 4685 groups Consisting of 1580 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000075578-chr8---126478475-126478623 l45 e 23 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 619501 reads mapping to 196640 Unique genomic coordinates Making up 4668 groups Consisting of 1591 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 395970 reads mapping to 196583 Unique genomic coordinates Making up 4739 groups Consisting of 1593 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 410767 reads mapping to 198295 Unique genomic coordinates Making up 4792 groups Consisting of 1600 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 398449 reads mapping to 191688 Unique genomic coordinates Making up 4584 groups Consisting of 1512 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 371910 reads mapping to 196543 Unique genomic coordinates Making up 4765 groups Consisting of 1645 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 392737 reads mapping to 196949 Unique genomic coordinates Making up 4660 groups Consisting of 1499 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 347857 reads mapping to 191706 Unique genomic coordinates Making up 4558 groups Consisting of 1521 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 466292 reads mapping to 196761 Unique genomic coordinates Making up 4728 groups Consisting of 1632 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000029060-chr2---168465490-168466131 l45 e 31 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 755443 reads mapping to 195203 Unique genomic coordinates Making up 4682 groups Consisting of 1611 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 418958 reads mapping to 194499 Unique genomic coordinates Making up 4785 groups Consisting of 1614 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 377924 reads mapping to 186495 Unique genomic coordinates Making up 4497 groups Consisting of 1491 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 366897 reads mapping to 192985 Unique genomic coordinates Making up 4676 groups Consisting of 1588 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 415431 reads mapping to 189584 Unique genomic coordinates Making up 4473 groups Consisting of 1534 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 359094 reads mapping to 188485 Unique genomic coordinates Making up 4587 groups Consisting of 1531 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 459681 reads mapping to 194104 Unique genomic coordinates Making up 4615 groups Consisting of 1559 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 345649 reads mapping to 190109 Unique genomic coordinates Making up 4617 groups Consisting of 1562 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 419668 reads mapping to 195961 Unique genomic coordinates Making up 4711 groups Consisting of 1588 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 332423 reads mapping to 189832 Unique genomic coordinates Making up 4603 groups Consisting of 1512 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 340239 reads mapping to 196032 Unique genomic coordinates Making up 4726 groups Consisting of 1626 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 402189 reads mapping to 190372 Unique genomic coordinates Making up 4569 groups Consisting of 1513 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 347704 reads mapping to 196868 Unique genomic coordinates Making up 4674 groups Consisting of 1596 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 434819 reads mapping to 192484 Unique genomic coordinates Making up 4640 groups Consisting of 1584 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 355030 reads mapping to 191496 Unique genomic coordinates Making up 4691 groups Consisting of 1536 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 418704 reads mapping to 193856 Unique genomic coordinates Making up 4756 groups Consisting of 1640 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000150756-chr3-+-99100547-99101047 l43 e 47 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 615604 reads mapping to 193133 Unique genomic coordinates Making up 4760 groups Consisting of 1521 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 337234 reads mapping to 192915 Unique genomic coordinates Making up 4610 groups Consisting of 1598 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000029848-chr3-+-145090649-145091149 l45 e 49 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 615992 reads mapping to 193905 Unique genomic coordinates Making up 4657 groups Consisting of 1539 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 412392 reads mapping to 191247 Unique genomic coordinates Making up 4722 groups Consisting of 1577 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 343713 reads mapping to 185866 Unique genomic coordinates Making up 4541 groups Consisting of 1531 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 354714 reads mapping to 199500 Unique genomic coordinates Making up 4949 groups Consisting of 1657 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 357782 reads mapping to 191935 Unique genomic coordinates Making up 4603 groups Consisting of 1533 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 350250 reads mapping to 197893 Unique genomic coordinates Making up 4787 groups Consisting of 1650 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 366012 reads mapping to 196399 Unique genomic coordinates Making up 4762 groups Consisting of 1590 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 387264 reads mapping to 201417 Unique genomic coordinates Making up 4788 groups Consisting of 1611 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 446029 reads mapping to 188781 Unique genomic coordinates Making up 4502 groups Consisting of 1558 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 354018 reads mapping to 192690 Unique genomic coordinates Making up 4635 groups Consisting of 1560 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 384702 reads mapping to 192849 Unique genomic coordinates Making up 4551 groups Consisting of 1533 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 402325 reads mapping to 190238 Unique genomic coordinates Making up 4656 groups Consisting of 1524 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 384335 reads mapping to 198875 Unique genomic coordinates Making up 4654 groups Consisting of 1600 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 363755 reads mapping to 194101 Unique genomic coordinates Making up 4691 groups Consisting of 1511 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 468190 reads mapping to 193661 Unique genomic coordinates Making up 4689 groups Consisting of 1492 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 378277 reads mapping to 194555 Unique genomic coordinates Making up 4640 groups Consisting of 1571 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 329238 reads mapping to 188589 Unique genomic coordinates Making up 4564 groups Consisting of 1520 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 325528 reads mapping to 184230 Unique genomic coordinates Making up 4452 groups Consisting of 1430 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 426259 reads mapping to 189135 Unique genomic coordinates Making up 4539 groups Consisting of 1510 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 353597 reads mapping to 196929 Unique genomic coordinates Making up 4804 groups Consisting of 1580 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 359857 reads mapping to 185725 Unique genomic coordinates Making up 4518 groups Consisting of 1493 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 352793 reads mapping to 186820 Unique genomic coordinates Making up 4388 groups Consisting of 1467 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 371267 reads mapping to 187716 Unique genomic coordinates Making up 4531 groups Consisting of 1469 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 435236 reads mapping to 183951 Unique genomic coordinates Making up 4452 groups Consisting of 1515 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 337237 reads mapping to 191436 Unique genomic coordinates Making up 4580 groups Consisting of 1555 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 448304 reads mapping to 197422 Unique genomic coordinates Making up 4734 groups Consisting of 1607 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 395999 reads mapping to 189204 Unique genomic coordinates Making up 4584 groups Consisting of 1563 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 346116 reads mapping to 186918 Unique genomic coordinates Making up 4492 groups Consisting of 1497 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 363788 reads mapping to 193621 Unique genomic coordinates Making up 4756 groups Consisting of 1620 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 396604 reads mapping to 201718 Unique genomic coordinates Making up 4904 groups Consisting of 1597 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 444806 reads mapping to 191138 Unique genomic coordinates Making up 4745 groups Consisting of 1544 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 338251 reads mapping to 188345 Unique genomic coordinates Making up 4586 groups Consisting of 1529 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 363556 reads mapping to 189890 Unique genomic coordinates Making up 4444 groups Consisting of 1491 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 426434 reads mapping to 190618 Unique genomic coordinates Making up 4587 groups Consisting of 1508 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000001559-chr6---128360684-128361583 l45 e 83 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 564012 reads mapping to 195821 Unique genomic coordinates Making up 4632 groups Consisting of 1555 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 384660 reads mapping to 190352 Unique genomic coordinates Making up 4636 groups Consisting of 1488 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 329336 reads mapping to 186985 Unique genomic coordinates Making up 4490 groups Consisting of 1513 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 489287 reads mapping to 199614 Unique genomic coordinates Making up 4819 groups Consisting of 1612 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 371753 reads mapping to 198467 Unique genomic coordinates Making up 4767 groups Consisting of 1585 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 334820 reads mapping to 196826 Unique genomic coordinates Making up 4760 groups Consisting of 1621 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 325593 reads mapping to 189054 Unique genomic coordinates Making up 4654 groups Consisting of 1554 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 353417 reads mapping to 189585 Unique genomic coordinates Making up 4592 groups Consisting of 1564 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 414652 reads mapping to 198444 Unique genomic coordinates Making up 4832 groups Consisting of 1631 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 435979 reads mapping to 189572 Unique genomic coordinates Making up 4567 groups Consisting of 1555 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 418878 reads mapping to 194874 Unique genomic coordinates Making up 4689 groups Consisting of 1570 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 403406 reads mapping to 203809 Unique genomic coordinates Making up 4963 groups Consisting of 1709 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 343949 reads mapping to 194877 Unique genomic coordinates Making up 4669 groups Consisting of 1570 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 367666 reads mapping to 191799 Unique genomic coordinates Making up 4654 groups Consisting of 1562 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 387137 reads mapping to 195728 Unique genomic coordinates Making up 4668 groups Consisting of 1586 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114096-chr9---58837498-58837998 l43 e 98 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 520627 reads mapping to 195605 Unique genomic coordinates Making up 4915 groups Consisting of 1648 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 352923 reads mapping to 189557 Unique genomic coordinates Making up 4525 groups Consisting of 1563 clusters