Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000171675-chr15---65712566-65714700 l44 e 0 nr 1000000 chr ENSMUST00000002976-chr6-+-120426408-120429000 l45 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1153749 reads mapping to 530510 Unique genomic coordinates Making up 14269 groups Consisting of 5014 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000109122-chr11-+-50882225-50886301 l44 e 1 nr 1000000 chr ENSMUST00000110227-chr2---130908527-130912501 l45 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1453265 reads mapping to 543190 Unique genomic coordinates Making up 14622 groups Consisting of 4912 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170913-chr14---79738841-79741402 l44 e 2 nr 1000000 chr ENSMUST00000031366-chr5-+-124270890-124271602 l45 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1251966 reads mapping to 599410 Unique genomic coordinates Making up 15924 groups Consisting of 5672 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000168710-chr17-+-19051286-19052003 l44 e 3 nr 1000000 chr ENSMUST00000106549-chr7---125993635-125994703 l45 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1140442 reads mapping to 549346 Unique genomic coordinates Making up 14692 groups Consisting of 5136 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000039769-chr15---55737079-55738504 l44 e 4 nr 1000000 chr ENSMUST00000130187-chr4---134084300-134087204 l45 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1335017 reads mapping to 578386 Unique genomic coordinates Making up 15556 groups Consisting of 5452 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000112657-chr14---13429384-13430505 l44 e 5 nr 1000000 chr ENSMUST00000124409-chr4---148529301-148531405 l45 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1288237 reads mapping to 582315 Unique genomic coordinates Making up 15565 groups Consisting of 5362 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000005798-chr12---55883890-55885606 l44 e 6 nr 1000000 chr ENSMUST00000115245-chr5---20808382-20809606 l43 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1323966 reads mapping to 545904 Unique genomic coordinates Making up 14735 groups Consisting of 4961 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022105-chr13---73802485-73805007 l44 e 7 nr 1000000 chr ENSMUST00000026377-chr4---140344252-140346207 l45 e 7 nr 1500000 chr ENSMUST00000115672-chr9---7859763-7861907 l41 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1617239 reads mapping to 571836 Unique genomic coordinates Making up 15069 groups Consisting of 5370 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000156298-chr16---93603719-93604308 l44 e 8 nr 1000000 chr ENSMUST00000094863-chr7---10690312-10691008 l43 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1237566 reads mapping to 556916 Unique genomic coordinates Making up 14767 groups Consisting of 5161 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000148126-chr17-+-87778193-87781109 l44 e 9 nr 1000000 chr ENSMUST00000125341-chr6---120181032-120182109 l45 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1179674 reads mapping to 541739 Unique genomic coordinates Making up 14685 groups Consisting of 5115 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000068860-chr16---60424047-60425710 l44 e 10 nr 1000000 chr ENSMUST00000136133-chr9---59692134-59692410 l43 e 10 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1069302 reads mapping to 541850 Unique genomic coordinates Making up 14662 groups Consisting of 4999 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000024897-chr17---65941131-65942211 l44 e 11 nr 1000000 chr ENSMUST00000086458-chr9---20448139-20449211 l43 e 11 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1109030 reads mapping to 550363 Unique genomic coordinates Making up 14771 groups Consisting of 5206 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023741-chr15---98669208-98678412 l44 e 12 nr 1000000 chr ENSMUST00000025217-chr18---35105098-35106812 l44 e 12 nr 1500000 chr ENSMUST00000119150-chr4---6187238-6188112 l41 e 12 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1939860 reads mapping to 578815 Unique genomic coordinates Making up 15411 groups Consisting of 5363 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000131380-chr15---83339583-83341313 l44 e 13 nr 1000000 chr ENSMUST00000173287-chr7-+-89695884-89697013 l43 e 13 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1145447 reads mapping to 573454 Unique genomic coordinates Making up 15329 groups Consisting of 5307 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000115560-chr16-+-20221247-20223514 l44 e 14 nr 1000000 chr ENSMUST00000031170-chr5---86462090-86465114 l43 e 14 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1326395 reads mapping to 587765 Unique genomic coordinates Making up 15436 groups Consisting of 5444 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022458-chr14-+-32064675-32073115 l44 e 15 nr 1000000 chr ENSMUST00000108111-chr4---40181781-40182915 l43 e 15 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1467799 reads mapping to 581389 Unique genomic coordinates Making up 15258 groups Consisting of 5326 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000021921-chr13---63633345-63636216 l44 e 16 nr 1000000 chr ENSMUST00000159159-chr3-+-137949156-137950416 l45 e 16 nr 1500000 chr ENSMUST00000168925-chr7-+-58801532-58802816 l43 e 16 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1668004 reads mapping to 559046 Unique genomic coordinates Making up 14788 groups Consisting of 5208 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000048478-chr14---51689986-51691117 l44 e 17 nr 1000000 chr ENSMUST00000108332-chr6-+-36906644-36910417 l43 e 17 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1228296 reads mapping to 566298 Unique genomic coordinates Making up 15412 groups Consisting of 5327 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000162830-chr15---48016297-48017418 l44 e 18 nr 1000000 chr ENSMUST00000030805-chr4---150278859-150279918 l45 e 18 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1360845 reads mapping to 558634 Unique genomic coordinates Making up 15019 groups Consisting of 5218 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000095564-chr12-+-83091037-83094719 l44 e 19 nr 1000000 chr ENSMUST00000057860-chr3---140872968-140875319 l45 e 19 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1498171 reads mapping to 593048 Unique genomic coordinates Making up 15789 groups Consisting of 5543 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000037418-chr12---88521839-88522920 l44 e 20 nr 1000000 chr ENSMUST00000107197-chr3---95043372-95045520 l43 e 20 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1344049 reads mapping to 542524 Unique genomic coordinates Making up 14373 groups Consisting of 5060 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000147759-chr16-+-14470063-14471221 l44 e 21 nr 1000000 chr ENSMUST00000172556-chr5---24786550-24788121 l43 e 21 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1228720 reads mapping to 526640 Unique genomic coordinates Making up 14092 groups Consisting of 4965 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022609-chr14---66167757-66168822 l44 e 22 nr 1000000 chr ENSMUST00000114113-chr5---38603276-38606122 l43 e 22 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1257832 reads mapping to 563695 Unique genomic coordinates Making up 15076 groups Consisting of 5297 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023678-chr16-+-91908148-91910123 l44 e 23 nr 1000000 chr ENSMUST00000137752-chr4---154982409-154985123 l45 e 23 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1309792 reads mapping to 568481 Unique genomic coordinates Making up 15063 groups Consisting of 5218 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000128342-chr15-+-79582439-79587824 l44 e 24 nr 1000000 chr ENSMUST00000137256-chr19---12846001-12849924 l44 e 24 nr 1500000 chr ENSMUST00000137256-chr19---12846001-12849924 l44 e 24 nr 2000000 chr ENSMUST00000087938-chr6-+-83095425-83096624 l43 e 24 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2371758 reads mapping to 587237 Unique genomic coordinates Making up 15665 groups Consisting of 5400 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000146993-chr15-+-88841293-88843125 l44 e 25 nr 1000000 chr ENSMUST00000042993-chr5---141039073-141041025 l45 e 25 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1252629 reads mapping to 552745 Unique genomic coordinates Making up 14809 groups Consisting of 5127 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000163991-chr15-+-76124864-76127326 l44 e 26 nr 1000000 chr ENSMUST00000032057-chr6-+-87010015-87011326 l43 e 26 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1181718 reads mapping to 592329 Unique genomic coordinates Making up 15868 groups Consisting of 5488 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000089360-chr16-+-56158081-56159227 l44 e 27 nr 1000000 chr ENSMUST00000074211-chr9---38789695-38790627 l43 e 27 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1072113 reads mapping to 538451 Unique genomic coordinates Making up 14434 groups Consisting of 5040 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000043437-chr18---38121727-38129428 l44 e 28 nr 1000000 chr ENSMUST00000110763-chr8-+-19250196-19250828 l43 e 28 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1144418 reads mapping to 558016 Unique genomic coordinates Making up 15076 groups Consisting of 5169 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000001619-chr17-+-26761035-26762129 l44 e 29 nr 1000000 chr ENSMUST00000128081-chr8-+-94046171-94050129 l43 e 29 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1072046 reads mapping to 552554 Unique genomic coordinates Making up 14768 groups Consisting of 5120 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000073561-chr14-+-51330007-51330930 l44 e 30 nr 1000000 chr ENSMUST00000147348-chr5-+-64724086-64725330 l43 e 30 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1358615 reads mapping to 580222 Unique genomic coordinates Making up 15668 groups Consisting of 5505 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000053336-chr16---21649118-21654331 l44 e 31 nr 1000000 chr ENSMUST00000067888-chr6---43373120-43374231 l43 e 31 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1499010 reads mapping to 579769 Unique genomic coordinates Making up 15364 groups Consisting of 5493 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023555-chr16-+-35824275-35828532 l44 e 32 nr 1000000 chr ENSMUST00000117577-chr7---120478336-120479532 l45 e 32 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1122619 reads mapping to 557862 Unique genomic coordinates Making up 14992 groups Consisting of 5168 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000065916-chr15-+-66502315-66506133 l44 e 33 nr 1000000 chr ENSMUST00000073957-chr5-+-14235542-14236933 l43 e 33 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1241720 reads mapping to 564799 Unique genomic coordinates Making up 15200 groups Consisting of 5223 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000160475-chr16-+-29587838-29590334 l44 e 34 nr 1000000 chr ENSMUST00000152438-chr8---89073927-89075034 l43 e 34 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1084006 reads mapping to 552559 Unique genomic coordinates Making up 14761 groups Consisting of 5149 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000073418-chr15---76012840-76015035 l44 e 35 nr 1000000 chr ENSMUST00000118978-chr4-+-144177147-144178535 l45 e 35 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1302564 reads mapping to 570153 Unique genomic coordinates Making up 15095 groups Consisting of 5202 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025101-chr17-+-85042945-85044636 l44 e 36 nr 1000000 chr ENSMUST00000098464-chr8-+-106786860-106788836 l45 e 36 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1103599 reads mapping to 562823 Unique genomic coordinates Making up 15141 groups Consisting of 5329 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000056102-chr16---96875984-96877137 l44 e 37 nr 1000000 chr ENSMUST00000149138-chr4---35168630-35169837 l43 e 37 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1415395 reads mapping to 543359 Unique genomic coordinates Making up 14540 groups Consisting of 5172 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000088142-chr15-+-100183631-100184638 l46 e 38 nr 1000000 chr ENSMUST00000101143-chr5---71167857-71169938 l43 e 38 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1337971 reads mapping to 546726 Unique genomic coordinates Making up 14551 groups Consisting of 5099 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023514-chr16---37653766-37654539 l44 e 39 nr 1000000 chr ENSMUST00000074346-chr6---99025348-99026539 l43 e 39 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1207105 reads mapping to 575565 Unique genomic coordinates Making up 15412 groups Consisting of 5411 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000036210-chr16---38548020-38550340 l44 e 40 nr 1000000 chr ENSMUST00000131251-chr8-+-15068874-15073840 l43 e 40 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1189106 reads mapping to 552513 Unique genomic coordinates Making up 14828 groups Consisting of 5114 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000120629-chr16---23717255-23718841 l44 e 41 nr 1000000 chr ENSMUST00000030526-chr4---138312122-138313541 l45 e 41 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1258837 reads mapping to 585334 Unique genomic coordinates Making up 15670 groups Consisting of 5381 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000041055-chr12---106886023-106888342 l46 e 42 nr 1000000 chr ENSMUST00000105769-chr4---143399148-143399742 l45 e 42 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1304753 reads mapping to 536928 Unique genomic coordinates Making up 14520 groups Consisting of 5080 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022550-chr14---65716334-65716943 l44 e 43 nr 1000000 chr ENSMUST00000153183-chr5-+-135632902-135639743 l45 e 43 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1296898 reads mapping to 581713 Unique genomic coordinates Making up 15470 groups Consisting of 5467 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000070080-chr18---20843100-20848344 l44 e 44 nr 1000000 chr ENSMUST00000125542-chr7---87241558-87244544 l43 e 44 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1229599 reads mapping to 557930 Unique genomic coordinates Making up 15052 groups Consisting of 5329 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000067173-chr16---57040300-57041445 l44 e 45 nr 1000000 chr ENSMUST00000027027-chr9-+-3440555-3441645 l41 e 45 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1098350 reads mapping to 578441 Unique genomic coordinates Making up 15421 groups Consisting of 5353 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000002436-chr17-+-5841346-5842046 l42 e 46 nr 1000000 chr ENSMUST00000112771-chr5-+-104602527-104609146 l45 e 46 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1329512 reads mapping to 585646 Unique genomic coordinates Making up 15544 groups Consisting of 5297 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000069293-chr1-+-46141900-46143047 l43 e 47 nr 1000000 chr ENSMUST00000038374-chr14-+-123112745-123113847 l46 e 47 nr 1500000 chr ENSMUST00000123941-chr5-+-134670231-134671347 l45 e 47 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1695289 reads mapping to 543847 Unique genomic coordinates Making up 14712 groups Consisting of 5132 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000050664-chr13-+-13822092-13823248 l44 e 48 nr 1000000 chr ENSMUST00000057135-chr2---120598465-120600148 l45 e 48 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1415519 reads mapping to 552060 Unique genomic coordinates Making up 14690 groups Consisting of 5179 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167706-chr10---115930249-115931349 l46 e 49 nr 1000000 chr ENSMUST00000057695-chr14---31009410-31010549 l44 e 49 nr 1500000 chr ENSMUST00000030165-chr4---43015215-43018649 l43 e 49 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1968469 reads mapping to 576028 Unique genomic coordinates Making up 15218 groups Consisting of 5404 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022867-chr15-+-34212555-34214050 l44 e 50 nr 1000000 chr ENSMUST00000038514-chr5---92848043-92849150 l43 e 50 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1333638 reads mapping to 564142 Unique genomic coordinates Making up 15021 groups Consisting of 5291 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000169805-chr17-+-17848506-17850951 l44 e 51 nr 1000000 chr ENSMUST00000116429-chr8---108467490-108472351 l45 e 51 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1130888 reads mapping to 531263 Unique genomic coordinates Making up 14230 groups Consisting of 4959 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022901-chr15---37853707-37857652 l44 e 52 nr 1000000 chr ENSMUST00000156022-chr4---137438285-137439852 l45 e 52 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1359452 reads mapping to 588912 Unique genomic coordinates Making up 15755 groups Consisting of 5578 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000000985-chr14-+-54985893-54989353 l44 e 53 nr 1000000 chr ENSMUST00000112121-chr5---115592990-115598653 l45 e 53 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1352022 reads mapping to 574405 Unique genomic coordinates Making up 15343 groups Consisting of 5432 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000166290-chr15-+-56608783-56609954 l44 e 54 nr 1000000 chr ENSMUST00000041892-chr5-+-65630297-65631354 l43 e 54 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1248380 reads mapping to 570617 Unique genomic coordinates Making up 15251 groups Consisting of 5383 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000171702-chr15---99450927-99453255 l44 e 55 nr 1000000 chr ENSMUST00000046426-chr5---121007279-121008455 l45 e 55 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1394559 reads mapping to 547073 Unique genomic coordinates Making up 14705 groups Consisting of 5049 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170178-chr15---64614786-64616056 l44 e 56 nr 1000000 chr ENSMUST00000030311-chr4-+-94319118-94320256 l43 e 56 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1440600 reads mapping to 570200 Unique genomic coordinates Making up 15133 groups Consisting of 5319 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170156-chr13---11944883-11945957 l44 e 57 nr 1000000 chr ENSMUST00000173013-chr17-+-33673532-33676157 l44 e 57 nr 1500000 chr ENSMUST00000044115-chr7-+-88006994-88009057 l43 e 57 nr 2000000 chr ENSMUST00000075578-chr8---126476359-126479157 l45 e 57 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2205987 reads mapping to 580604 Unique genomic coordinates Making up 15437 groups Consisting of 5391 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000065916-chr15-+-66579793-66580858 l44 e 58 nr 1000000 chr ENSMUST00000131176-chr6-+-128955520-128958058 l45 e 58 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1194998 reads mapping to 545139 Unique genomic coordinates Making up 14445 groups Consisting of 5011 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000016897-chr15---83322473-83323559 l44 e 59 nr 1000000 chr ENSMUST00000113531-chr5---74992761-74994459 l43 e 59 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1253296 reads mapping to 543565 Unique genomic coordinates Making up 14430 groups Consisting of 4997 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000163904-chr14-+-79826200-79829060 l44 e 60 nr 1000000 chr ENSMUST00000086056-chr5-+-129248602-129250760 l45 e 60 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1330773 reads mapping to 547939 Unique genomic coordinates Making up 14460 groups Consisting of 5070 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000046191-chr14---45996009-45998661 l44 e 61 nr 1000000 chr ENSMUST00000125922-chr5-+-77218252-77219161 l43 e 61 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1289699 reads mapping to 562459 Unique genomic coordinates Making up 14785 groups Consisting of 5151 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000138843-chr15---100238032-100241162 l46 e 62 nr 1000000 chr ENSMUST00000031691-chr6-+-24715193-24717662 l43 e 62 nr 1500000 chr ENSMUST00000142260-chr7---52824456-52827062 l43 e 62 nr 2000000 chr ENSMUST00000142260-chr7---52824456-52827062 l43 e 62 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2485909 reads mapping to 571584 Unique genomic coordinates Making up 15167 groups Consisting of 5159 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000070059-chr17---7575646-7576863 l42 e 63 nr 1000000 chr ENSMUST00000029803-chr3-+-138217854-138220563 l45 e 63 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1482683 reads mapping to 549096 Unique genomic coordinates Making up 14697 groups Consisting of 5034 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000009354-chr11-+-106226788-106227464 l46 e 64 nr 1000000 chr ENSMUST00000134754-chr4---56845278-56846364 l43 e 64 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1374097 reads mapping to 575135 Unique genomic coordinates Making up 15460 groups Consisting of 5342 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025144-chr17---33087906-33089265 l44 e 65 nr 1000000 chr ENSMUST00000126941-chr7-+-72808259-72810365 l43 e 65 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1165035 reads mapping to 544338 Unique genomic coordinates Making up 14548 groups Consisting of 5009 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000092070-chr18-+-12695696-12696866 l44 e 66 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 956264 reads mapping to 503703 Unique genomic coordinates Making up 13405 groups Consisting of 4569 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000169905-chr15-+-34050678-34051767 l44 e 67 nr 1000000 chr ENSMUST00000156144-chr4-+-103076769-103078467 l45 e 67 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1309910 reads mapping to 554388 Unique genomic coordinates Making up 14766 groups Consisting of 5094 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114371-chr16---57310866-57311968 l44 e 68 nr 1000000 chr ENSMUST00000171378-chr7---117565459-117566568 l45 e 68 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1307149 reads mapping to 575502 Unique genomic coordinates Making up 15465 groups Consisting of 5375 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000097301-chr17---56753724-56756369 l44 e 69 nr 1000000 chr ENSMUST00000116517-chr9---103255432-103259269 l45 e 69 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1088342 reads mapping to 536173 Unique genomic coordinates Making up 14575 groups Consisting of 5061 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000057018-chr16---29417351-29419170 l44 e 70 nr 1000000 chr ENSMUST00000114297-chr6---57702259-57705170 l43 e 70 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1182831 reads mapping to 538543 Unique genomic coordinates Making up 14408 groups Consisting of 5032 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000097689-chr18-+-4844372-4850171 l42 e 71 nr 1000000 chr ENSMUST00000123453-chr8-+-72337015-72342871 l43 e 71 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1113305 reads mapping to 552757 Unique genomic coordinates Making up 14774 groups Consisting of 5093 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023452-chr16---17139157-17143472 l44 e 72 nr 1000000 chr ENSMUST00000148563-chr6-+-121798964-121800872 l45 e 72 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1174011 reads mapping to 566454 Unique genomic coordinates Making up 15260 groups Consisting of 5343 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000097381-chr17-+-22751350-22752473 l44 e 73 nr 1000000 chr ENSMUST00000031370-chr5---129292027-129293173 l45 e 73 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1238753 reads mapping to 547572 Unique genomic coordinates Making up 14702 groups Consisting of 5091 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114763-chr16-+-37820742-37821774 l44 e 74 nr 1000000 chr ENSMUST00000128282-chr6---52718791-52720874 l43 e 74 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1205186 reads mapping to 562659 Unique genomic coordinates Making up 15110 groups Consisting of 5231 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000066807-chr14-+-33387492-33394175 l44 e 75 nr 1000000 chr ENSMUST00000163653-chr4-+-43255607-43256675 l43 e 75 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1381954 reads mapping to 574726 Unique genomic coordinates Making up 15073 groups Consisting of 5467 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000142000-chr17-+-25168530-25171476 l44 e 76 nr 1000000 chr ENSMUST00000174265-chr6---124674475-124675876 l45 e 76 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1182497 reads mapping to 539134 Unique genomic coordinates Making up 14277 groups Consisting of 4955 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000069245-chr18-+-44145450-44146577 l44 e 77 nr 1000000 chr ENSMUST00000142824-chr8-+-80084206-80087877 l43 e 77 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1090368 reads mapping to 559122 Unique genomic coordinates Making up 15072 groups Consisting of 5199 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000159575-chr16-+-21216890-21223378 l44 e 78 nr 1000000 chr ENSMUST00000167679-chr6-+-137324998-137327178 l45 e 78 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1183568 reads mapping to 597344 Unique genomic coordinates Making up 16073 groups Consisting of 5671 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000109247-chr15-+-94381734-94382879 l44 e 79 nr 1000000 chr ENSMUST00000095386-chr8---26848184-26849279 l43 e 79 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1083883 reads mapping to 556417 Unique genomic coordinates Making up 14898 groups Consisting of 5284 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000012161-chr16-+-17805942-17808380 l44 e 80 nr 1000000 chr ENSMUST00000086909-chr5-+-77085537-77087380 l43 e 80 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1282818 reads mapping to 566342 Unique genomic coordinates Making up 15226 groups Consisting of 5282 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022842-chr15---31521540-31524781 l44 e 81 nr 1000000 chr ENSMUST00000028233-chr2---34894231-34895781 l43 e 81 nr 1500000 chr ENSMUST00000063278-chr8---127087123-127088981 l45 e 81 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1596204 reads mapping to 540886 Unique genomic coordinates Making up 14445 groups Consisting of 4990 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000006451-chr14---51400650-51401782 l44 e 82 nr 1000000 chr ENSMUST00000064377-chr6---28367829-28371882 l43 e 82 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1246512 reads mapping to 570802 Unique genomic coordinates Making up 15103 groups Consisting of 5199 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000115547-chr16---20367615-20369783 l44 e 83 nr 1000000 chr ENSMUST00000152005-chr6-+-17598020-17599083 l43 e 83 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1237648 reads mapping to 581995 Unique genomic coordinates Making up 15619 groups Consisting of 5334 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000163825-chr18-+-56633173-56634284 l44 e 84 nr 1000000 chr ENSMUST00000003850-chr7---28001471-28002684 l43 e 84 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1180069 reads mapping to 533852 Unique genomic coordinates Making up 14149 groups Consisting of 4890 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000000201-chr14---123683935-123685085 l46 e 85 nr 1000000 chr ENSMUST00000149412-chr5---5675341-5677285 l41 e 85 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1292674 reads mapping to 564254 Unique genomic coordinates Making up 15251 groups Consisting of 5246 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000016685-chr15-+-85216921-85218086 l44 e 86 nr 1000000 chr ENSMUST00000073793-chr7---54443528-54444786 l43 e 86 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1205235 reads mapping to 573569 Unique genomic coordinates Making up 15147 groups Consisting of 5371 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023736-chr15---98737468-98740387 l44 e 87 nr 1000000 chr ENSMUST00000156238-chr5-+-89626174-89627287 l43 e 87 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1444045 reads mapping to 582583 Unique genomic coordinates Making up 15443 groups Consisting of 5454 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023370-chr16---44503142-44504288 l44 e 88 nr 1000000 chr ENSMUST00000113818-chr6-+-84019667-84021488 l43 e 88 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1217847 reads mapping to 559261 Unique genomic coordinates Making up 14882 groups Consisting of 5258 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025241-chr18-+-32399954-32400989 l44 e 89 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 980046 reads mapping to 529799 Unique genomic coordinates Making up 14358 groups Consisting of 5053 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114076-chr16---91068777-91069390 l44 e 90 nr 1000000 chr ENSMUST00000075303-chr6---120463916-120465090 l45 e 90 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1262180 reads mapping to 555841 Unique genomic coordinates Making up 14759 groups Consisting of 5156 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000136087-chr17-+-14011914-14012491 l44 e 91 nr 1000000 chr ENSMUST00000149002-chr4-+-140873897-140875491 l45 e 91 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1329701 reads mapping to 583684 Unique genomic coordinates Making up 15663 groups Consisting of 5332 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000099705-chr16---55894541-55895392 l44 e 92 nr 1000000 chr ENSMUST00000053561-chr5---122695010-122699492 l45 e 92 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1263923 reads mapping to 550906 Unique genomic coordinates Making up 14657 groups Consisting of 5181 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000081138-chr14---74353729-74355393 l44 e 93 nr 1000000 chr ENSMUST00000031288-chr5-+-112759611-112767093 l45 e 93 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1247151 reads mapping to 574335 Unique genomic coordinates Making up 15303 groups Consisting of 5287 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000115706-chr16-+-17158100-17160794 l44 e 94 nr 1000000 chr ENSMUST00000171023-chr5-+-3810756-3813694 l41 e 94 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1365603 reads mapping to 590027 Unique genomic coordinates Making up 15631 groups Consisting of 5466 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000169421-chr16---45661767-45664895 l44 e 95 nr 1000000 chr ENSMUST00000098966-chr8-+-3385860-3390295 l41 e 95 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1118352 reads mapping to 543694 Unique genomic coordinates Making up 14447 groups Consisting of 5034 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000066807-chr14-+-33365261-33366396 l44 e 96 nr 1000000 chr ENSMUST00000161577-chr3---132664972-132666096 l45 e 96 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1454584 reads mapping to 587174 Unique genomic coordinates Making up 15718 groups Consisting of 5437 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000168171-chr17-+-32838328-32840297 l44 e 97 nr 1000000 chr ENSMUST00000173861-chr7---49222969-49225397 l43 e 97 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1143844 reads mapping to 556119 Unique genomic coordinates Making up 14842 groups Consisting of 5216 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000069936-chr16-+-56266675-56269698 l44 e 98 nr 1000000 chr ENSMUST00000098811-chr7-+-14056985-14058798 l43 e 98 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1221855 reads mapping to 569277 Unique genomic coordinates Making up 15220 groups Consisting of 5320 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000065302-chr14---57170260-57173099 l44 e 99 nr 1000000 chr ENSMUST00000065302-chr14---57170260-57173099 l44 e 99 nr 1500000 chr ENSMUST00000065302-chr14---57170260-57173099 l44 e 99 nr 2000000 chr ENSMUST00000065302-chr14---57170260-57173099 l44 e 99 nr 2500000 chr ENSMUST00000080953-chr2---69262397-69264599 l43 e 99 nr 3000000 chr ENSMUST00000048248-chr7-+-4666435-4667599 l41 e 99 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 3224746 reads mapping to 561467 Unique genomic coordinates Making up 14944 groups Consisting of 5199 clusters