Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 311549 reads mapping to 191227 Unique genomic coordinates Making up 4302 groups Consisting of 1183 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 332476 reads mapping to 199162 Unique genomic coordinates Making up 4441 groups Consisting of 1251 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 364342 reads mapping to 217023 Unique genomic coordinates Making up 4883 groups Consisting of 1372 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 320538 reads mapping to 202227 Unique genomic coordinates Making up 4682 groups Consisting of 1230 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 336196 reads mapping to 213484 Unique genomic coordinates Making up 4835 groups Consisting of 1284 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 338875 reads mapping to 210475 Unique genomic coordinates Making up 4844 groups Consisting of 1306 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 329707 reads mapping to 203169 Unique genomic coordinates Making up 4574 groups Consisting of 1238 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 361973 reads mapping to 211252 Unique genomic coordinates Making up 4789 groups Consisting of 1308 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 309135 reads mapping to 198900 Unique genomic coordinates Making up 4462 groups Consisting of 1146 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 361367 reads mapping to 200508 Unique genomic coordinates Making up 4566 groups Consisting of 1286 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 339217 reads mapping to 198733 Unique genomic coordinates Making up 4482 groups Consisting of 1198 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 410517 reads mapping to 198899 Unique genomic coordinates Making up 4473 groups Consisting of 1222 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 340336 reads mapping to 206443 Unique genomic coordinates Making up 4665 groups Consisting of 1233 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 321193 reads mapping to 210967 Unique genomic coordinates Making up 4838 groups Consisting of 1304 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 342292 reads mapping to 209227 Unique genomic coordinates Making up 4765 groups Consisting of 1256 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 343544 reads mapping to 210074 Unique genomic coordinates Making up 4637 groups Consisting of 1293 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 336999 reads mapping to 203762 Unique genomic coordinates Making up 4650 groups Consisting of 1284 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 317098 reads mapping to 210114 Unique genomic coordinates Making up 4687 groups Consisting of 1258 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 380524 reads mapping to 204493 Unique genomic coordinates Making up 4607 groups Consisting of 1199 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 486787 reads mapping to 216955 Unique genomic coordinates Making up 4924 groups Consisting of 1332 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 358373 reads mapping to 196253 Unique genomic coordinates Making up 4458 groups Consisting of 1193 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 358749 reads mapping to 192676 Unique genomic coordinates Making up 4313 groups Consisting of 1170 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 322989 reads mapping to 207577 Unique genomic coordinates Making up 4755 groups Consisting of 1289 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 378638 reads mapping to 209716 Unique genomic coordinates Making up 4756 groups Consisting of 1234 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 312663 reads mapping to 213966 Unique genomic coordinates Making up 4856 groups Consisting of 1288 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 296363 reads mapping to 203131 Unique genomic coordinates Making up 4681 groups Consisting of 1254 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 368167 reads mapping to 217956 Unique genomic coordinates Making up 4834 groups Consisting of 1260 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 301899 reads mapping to 199198 Unique genomic coordinates Making up 4577 groups Consisting of 1231 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 315953 reads mapping to 202676 Unique genomic coordinates Making up 4513 groups Consisting of 1240 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 349529 reads mapping to 197967 Unique genomic coordinates Making up 4511 groups Consisting of 1158 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 311026 reads mapping to 215347 Unique genomic coordinates Making up 4886 groups Consisting of 1258 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 353631 reads mapping to 211706 Unique genomic coordinates Making up 4792 groups Consisting of 1360 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 361364 reads mapping to 202311 Unique genomic coordinates Making up 4565 groups Consisting of 1307 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 338859 reads mapping to 204234 Unique genomic coordinates Making up 4648 groups Consisting of 1244 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 325296 reads mapping to 201145 Unique genomic coordinates Making up 4585 groups Consisting of 1277 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 379985 reads mapping to 206172 Unique genomic coordinates Making up 4624 groups Consisting of 1224 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 315693 reads mapping to 207296 Unique genomic coordinates Making up 4770 groups Consisting of 1328 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 300407 reads mapping to 195902 Unique genomic coordinates Making up 4400 groups Consisting of 1160 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 333869 reads mapping to 197243 Unique genomic coordinates Making up 4425 groups Consisting of 1211 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 402293 reads mapping to 211441 Unique genomic coordinates Making up 4773 groups Consisting of 1317 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 307835 reads mapping to 205036 Unique genomic coordinates Making up 4751 groups Consisting of 1301 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 339825 reads mapping to 214982 Unique genomic coordinates Making up 4888 groups Consisting of 1308 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 333966 reads mapping to 197904 Unique genomic coordinates Making up 4507 groups Consisting of 1232 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 322772 reads mapping to 206459 Unique genomic coordinates Making up 4661 groups Consisting of 1275 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 389912 reads mapping to 207277 Unique genomic coordinates Making up 4656 groups Consisting of 1287 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 339404 reads mapping to 210494 Unique genomic coordinates Making up 4882 groups Consisting of 1261 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 328422 reads mapping to 213088 Unique genomic coordinates Making up 4784 groups Consisting of 1313 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 311528 reads mapping to 198931 Unique genomic coordinates Making up 4604 groups Consisting of 1255 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 325956 reads mapping to 202822 Unique genomic coordinates Making up 4558 groups Consisting of 1231 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 318697 reads mapping to 208345 Unique genomic coordinates Making up 4687 groups Consisting of 1301 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 396386 reads mapping to 207560 Unique genomic coordinates Making up 4622 groups Consisting of 1287 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 292745 reads mapping to 194490 Unique genomic coordinates Making up 4437 groups Consisting of 1224 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 353556 reads mapping to 212158 Unique genomic coordinates Making up 4783 groups Consisting of 1299 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 348604 reads mapping to 211326 Unique genomic coordinates Making up 4726 groups Consisting of 1351 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 382969 reads mapping to 212653 Unique genomic coordinates Making up 4805 groups Consisting of 1313 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 328130 reads mapping to 200248 Unique genomic coordinates Making up 4461 groups Consisting of 1157 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 305557 reads mapping to 206289 Unique genomic coordinates Making up 4663 groups Consisting of 1279 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 353389 reads mapping to 211973 Unique genomic coordinates Making up 4860 groups Consisting of 1330 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 306399 reads mapping to 195385 Unique genomic coordinates Making up 4398 groups Consisting of 1261 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 342835 reads mapping to 201166 Unique genomic coordinates Making up 4579 groups Consisting of 1225 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 387280 reads mapping to 201802 Unique genomic coordinates Making up 4592 groups Consisting of 1265 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 307947 reads mapping to 200301 Unique genomic coordinates Making up 4484 groups Consisting of 1202 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 347190 reads mapping to 210518 Unique genomic coordinates Making up 4760 groups Consisting of 1335 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 368764 reads mapping to 202534 Unique genomic coordinates Making up 4613 groups Consisting of 1178 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 293414 reads mapping to 207420 Unique genomic coordinates Making up 4735 groups Consisting of 1272 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 327829 reads mapping to 200460 Unique genomic coordinates Making up 4626 groups Consisting of 1240 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 258498 reads mapping to 181444 Unique genomic coordinates Making up 4166 groups Consisting of 1142 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 330120 reads mapping to 204495 Unique genomic coordinates Making up 4644 groups Consisting of 1276 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 350911 reads mapping to 212159 Unique genomic coordinates Making up 4770 groups Consisting of 1286 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 307325 reads mapping to 199579 Unique genomic coordinates Making up 4447 groups Consisting of 1183 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 313055 reads mapping to 196690 Unique genomic coordinates Making up 4407 groups Consisting of 1195 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 305160 reads mapping to 198553 Unique genomic coordinates Making up 4426 groups Consisting of 1148 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 336349 reads mapping to 208195 Unique genomic coordinates Making up 4733 groups Consisting of 1326 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 403993 reads mapping to 203117 Unique genomic coordinates Making up 4611 groups Consisting of 1210 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 310156 reads mapping to 208409 Unique genomic coordinates Making up 4743 groups Consisting of 1260 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 415662 reads mapping to 204226 Unique genomic coordinates Making up 4599 groups Consisting of 1236 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 317411 reads mapping to 194690 Unique genomic coordinates Making up 4337 groups Consisting of 1198 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 305956 reads mapping to 200201 Unique genomic coordinates Making up 4551 groups Consisting of 1256 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 380919 reads mapping to 223648 Unique genomic coordinates Making up 5072 groups Consisting of 1401 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 336834 reads mapping to 202530 Unique genomic coordinates Making up 4527 groups Consisting of 1237 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 315545 reads mapping to 207774 Unique genomic coordinates Making up 4705 groups Consisting of 1245 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 431349 reads mapping to 196046 Unique genomic coordinates Making up 4489 groups Consisting of 1194 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 357712 reads mapping to 207028 Unique genomic coordinates Making up 4654 groups Consisting of 1212 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 327066 reads mapping to 212972 Unique genomic coordinates Making up 4736 groups Consisting of 1268 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 272030 reads mapping to 192033 Unique genomic coordinates Making up 4333 groups Consisting of 1123 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 322815 reads mapping to 207735 Unique genomic coordinates Making up 4793 groups Consisting of 1249 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 313853 reads mapping to 206526 Unique genomic coordinates Making up 4692 groups Consisting of 1248 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 319749 reads mapping to 211048 Unique genomic coordinates Making up 4836 groups Consisting of 1302 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 305441 reads mapping to 202269 Unique genomic coordinates Making up 4624 groups Consisting of 1276 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 288733 reads mapping to 194285 Unique genomic coordinates Making up 4394 groups Consisting of 1183 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 409346 reads mapping to 201866 Unique genomic coordinates Making up 4506 groups Consisting of 1224 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000081872-chr7-+-57431095-57432191 l43 e 91 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 546248 reads mapping to 213943 Unique genomic coordinates Making up 4834 groups Consisting of 1301 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 337363 reads mapping to 201428 Unique genomic coordinates Making up 4576 groups Consisting of 1185 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 375819 reads mapping to 210762 Unique genomic coordinates Making up 4853 groups Consisting of 1337 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 362634 reads mapping to 213913 Unique genomic coordinates Making up 4849 groups Consisting of 1326 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 310607 reads mapping to 196246 Unique genomic coordinates Making up 4458 groups Consisting of 1142 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 355850 reads mapping to 212501 Unique genomic coordinates Making up 4830 groups Consisting of 1300 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 348142 reads mapping to 202443 Unique genomic coordinates Making up 4561 groups Consisting of 1267 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 289846 reads mapping to 203609 Unique genomic coordinates Making up 4638 groups Consisting of 1290 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 331519 reads mapping to 202390 Unique genomic coordinates Making up 4528 groups Consisting of 1219 clusters