Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 260077 reads mapping to 164160 Unique genomic coordinates Making up 3427 groups Consisting of 909 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 279816 reads mapping to 170831 Unique genomic coordinates Making up 3533 groups Consisting of 955 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 306229 reads mapping to 186433 Unique genomic coordinates Making up 3940 groups Consisting of 1082 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 266944 reads mapping to 173525 Unique genomic coordinates Making up 3729 groups Consisting of 974 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 281360 reads mapping to 183235 Unique genomic coordinates Making up 3859 groups Consisting of 1030 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 285476 reads mapping to 180541 Unique genomic coordinates Making up 3860 groups Consisting of 1013 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 275112 reads mapping to 174345 Unique genomic coordinates Making up 3666 groups Consisting of 1011 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 301889 reads mapping to 181398 Unique genomic coordinates Making up 3825 groups Consisting of 1022 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 258497 reads mapping to 170558 Unique genomic coordinates Making up 3629 groups Consisting of 908 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 301363 reads mapping to 172144 Unique genomic coordinates Making up 3622 groups Consisting of 1010 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 283356 reads mapping to 170890 Unique genomic coordinates Making up 3583 groups Consisting of 964 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 339450 reads mapping to 170563 Unique genomic coordinates Making up 3557 groups Consisting of 953 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 282973 reads mapping to 177344 Unique genomic coordinates Making up 3746 groups Consisting of 999 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 270122 reads mapping to 180973 Unique genomic coordinates Making up 3902 groups Consisting of 1034 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 286518 reads mapping to 179458 Unique genomic coordinates Making up 3761 groups Consisting of 966 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 287108 reads mapping to 180240 Unique genomic coordinates Making up 3719 groups Consisting of 1029 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 282979 reads mapping to 175088 Unique genomic coordinates Making up 3734 groups Consisting of 1009 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 265117 reads mapping to 180453 Unique genomic coordinates Making up 3795 groups Consisting of 992 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 316618 reads mapping to 175956 Unique genomic coordinates Making up 3682 groups Consisting of 945 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 401968 reads mapping to 186384 Unique genomic coordinates Making up 3985 groups Consisting of 1074 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 297563 reads mapping to 168320 Unique genomic coordinates Making up 3584 groups Consisting of 944 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 299107 reads mapping to 165565 Unique genomic coordinates Making up 3463 groups Consisting of 913 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 269335 reads mapping to 178320 Unique genomic coordinates Making up 3794 groups Consisting of 1018 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 314745 reads mapping to 179982 Unique genomic coordinates Making up 3782 groups Consisting of 983 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 261797 reads mapping to 183297 Unique genomic coordinates Making up 3881 groups Consisting of 1023 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 247913 reads mapping to 173929 Unique genomic coordinates Making up 3713 groups Consisting of 960 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 305938 reads mapping to 186981 Unique genomic coordinates Making up 3868 groups Consisting of 1018 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 251139 reads mapping to 170856 Unique genomic coordinates Making up 3657 groups Consisting of 973 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 261786 reads mapping to 173731 Unique genomic coordinates Making up 3609 groups Consisting of 968 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 291008 reads mapping to 169715 Unique genomic coordinates Making up 3610 groups Consisting of 917 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 260200 reads mapping to 184521 Unique genomic coordinates Making up 3931 groups Consisting of 996 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 293268 reads mapping to 181898 Unique genomic coordinates Making up 3821 groups Consisting of 1064 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 301708 reads mapping to 173944 Unique genomic coordinates Making up 3715 groups Consisting of 1051 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 282893 reads mapping to 175089 Unique genomic coordinates Making up 3690 groups Consisting of 969 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 271589 reads mapping to 172640 Unique genomic coordinates Making up 3658 groups Consisting of 1017 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 319700 reads mapping to 177023 Unique genomic coordinates Making up 3706 groups Consisting of 963 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 263878 reads mapping to 178274 Unique genomic coordinates Making up 3815 groups Consisting of 1045 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 253092 reads mapping to 168027 Unique genomic coordinates Making up 3493 groups Consisting of 896 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 278793 reads mapping to 169292 Unique genomic coordinates Making up 3535 groups Consisting of 972 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 331895 reads mapping to 181523 Unique genomic coordinates Making up 3856 groups Consisting of 1069 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 256714 reads mapping to 175852 Unique genomic coordinates Making up 3810 groups Consisting of 1027 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 285652 reads mapping to 184497 Unique genomic coordinates Making up 3880 groups Consisting of 1045 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 278779 reads mapping to 169622 Unique genomic coordinates Making up 3606 groups Consisting of 985 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 269846 reads mapping to 177040 Unique genomic coordinates Making up 3736 groups Consisting of 996 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 321111 reads mapping to 178002 Unique genomic coordinates Making up 3748 groups Consisting of 1036 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 281595 reads mapping to 180487 Unique genomic coordinates Making up 3877 groups Consisting of 982 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 273068 reads mapping to 182684 Unique genomic coordinates Making up 3818 groups Consisting of 1031 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 260209 reads mapping to 170752 Unique genomic coordinates Making up 3673 groups Consisting of 1005 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 272167 reads mapping to 174193 Unique genomic coordinates Making up 3683 groups Consisting of 990 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 267117 reads mapping to 179031 Unique genomic coordinates Making up 3799 groups Consisting of 1025 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 329747 reads mapping to 178431 Unique genomic coordinates Making up 3714 groups Consisting of 1032 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 244807 reads mapping to 166753 Unique genomic coordinates Making up 3544 groups Consisting of 986 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 294742 reads mapping to 182283 Unique genomic coordinates Making up 3897 groups Consisting of 1039 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 291089 reads mapping to 181481 Unique genomic coordinates Making up 3782 groups Consisting of 1081 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 316867 reads mapping to 182512 Unique genomic coordinates Making up 3855 groups Consisting of 1049 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 273073 reads mapping to 172020 Unique genomic coordinates Making up 3593 groups Consisting of 904 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 255832 reads mapping to 176871 Unique genomic coordinates Making up 3771 groups Consisting of 1014 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 292945 reads mapping to 182004 Unique genomic coordinates Making up 3918 groups Consisting of 1045 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 256861 reads mapping to 167714 Unique genomic coordinates Making up 3518 groups Consisting of 1019 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 286201 reads mapping to 172615 Unique genomic coordinates Making up 3674 groups Consisting of 962 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 316762 reads mapping to 173674 Unique genomic coordinates Making up 3668 groups Consisting of 1009 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 259101 reads mapping to 172201 Unique genomic coordinates Making up 3601 groups Consisting of 942 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 289735 reads mapping to 180780 Unique genomic coordinates Making up 3817 groups Consisting of 1046 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 309463 reads mapping to 174060 Unique genomic coordinates Making up 3636 groups Consisting of 930 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 245813 reads mapping to 177537 Unique genomic coordinates Making up 3769 groups Consisting of 995 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 273559 reads mapping to 172149 Unique genomic coordinates Making up 3741 groups Consisting of 1012 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 216355 reads mapping to 155545 Unique genomic coordinates Making up 3316 groups Consisting of 879 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 275021 reads mapping to 175580 Unique genomic coordinates Making up 3721 groups Consisting of 1021 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 294929 reads mapping to 182069 Unique genomic coordinates Making up 3783 groups Consisting of 1019 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 256187 reads mapping to 171330 Unique genomic coordinates Making up 3570 groups Consisting of 941 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 260133 reads mapping to 168737 Unique genomic coordinates Making up 3515 groups Consisting of 934 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 255922 reads mapping to 170287 Unique genomic coordinates Making up 3538 groups Consisting of 911 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 282215 reads mapping to 178793 Unique genomic coordinates Making up 3795 groups Consisting of 1047 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 334790 reads mapping to 174161 Unique genomic coordinates Making up 3709 groups Consisting of 956 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 259821 reads mapping to 178906 Unique genomic coordinates Making up 3792 groups Consisting of 1008 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 342649 reads mapping to 175152 Unique genomic coordinates Making up 3668 groups Consisting of 978 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 262594 reads mapping to 166947 Unique genomic coordinates Making up 3467 groups Consisting of 946 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 255581 reads mapping to 171623 Unique genomic coordinates Making up 3579 groups Consisting of 967 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 317047 reads mapping to 191948 Unique genomic coordinates Making up 4094 groups Consisting of 1132 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 280201 reads mapping to 173761 Unique genomic coordinates Making up 3606 groups Consisting of 981 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 263102 reads mapping to 178028 Unique genomic coordinates Making up 3765 groups Consisting of 994 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 354105 reads mapping to 168367 Unique genomic coordinates Making up 3554 groups Consisting of 924 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 295789 reads mapping to 177182 Unique genomic coordinates Making up 3711 groups Consisting of 964 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 272743 reads mapping to 182794 Unique genomic coordinates Making up 3817 groups Consisting of 1007 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 227484 reads mapping to 164493 Unique genomic coordinates Making up 3404 groups Consisting of 887 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 268810 reads mapping to 178001 Unique genomic coordinates Making up 3809 groups Consisting of 966 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 263226 reads mapping to 177163 Unique genomic coordinates Making up 3774 groups Consisting of 996 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 267016 reads mapping to 180931 Unique genomic coordinates Making up 3857 groups Consisting of 1016 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 255639 reads mapping to 173507 Unique genomic coordinates Making up 3713 groups Consisting of 1001 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 241863 reads mapping to 166824 Unique genomic coordinates Making up 3557 groups Consisting of 963 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 340004 reads mapping to 173372 Unique genomic coordinates Making up 3604 groups Consisting of 977 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 443235 reads mapping to 183680 Unique genomic coordinates Making up 3888 groups Consisting of 1048 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 281254 reads mapping to 172796 Unique genomic coordinates Making up 3622 groups Consisting of 938 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 311247 reads mapping to 180991 Unique genomic coordinates Making up 3848 groups Consisting of 1067 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 303840 reads mapping to 183641 Unique genomic coordinates Making up 3895 groups Consisting of 1051 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 257028 reads mapping to 168678 Unique genomic coordinates Making up 3565 groups Consisting of 920 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 295652 reads mapping to 182231 Unique genomic coordinates Making up 3817 groups Consisting of 1013 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 290342 reads mapping to 173516 Unique genomic coordinates Making up 3642 groups Consisting of 994 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 243292 reads mapping to 174585 Unique genomic coordinates Making up 3716 groups Consisting of 1017 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 275270 reads mapping to 173476 Unique genomic coordinates Making up 3618 groups Consisting of 981 clusters