Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 51475 reads mapping to 34831 Unique genomic coordinates Making up 508 groups Consisting of 111 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 54350 reads mapping to 36415 Unique genomic coordinates Making up 510 groups Consisting of 124 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 60070 reads mapping to 39267 Unique genomic coordinates Making up 598 groups Consisting of 130 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 53013 reads mapping to 36886 Unique genomic coordinates Making up 509 groups Consisting of 116 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 55396 reads mapping to 39193 Unique genomic coordinates Making up 600 groups Consisting of 112 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 55199 reads mapping to 37919 Unique genomic coordinates Making up 547 groups Consisting of 123 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 54781 reads mapping to 37602 Unique genomic coordinates Making up 570 groups Consisting of 118 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 60972 reads mapping to 39384 Unique genomic coordinates Making up 590 groups Consisting of 114 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 50405 reads mapping to 36134 Unique genomic coordinates Making up 538 groups Consisting of 125 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 64209 reads mapping to 37189 Unique genomic coordinates Making up 528 groups Consisting of 123 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 52292 reads mapping to 36158 Unique genomic coordinates Making up 555 groups Consisting of 125 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 71189 reads mapping to 35910 Unique genomic coordinates Making up 492 groups Consisting of 97 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 56206 reads mapping to 37397 Unique genomic coordinates Making up 534 groups Consisting of 106 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 50884 reads mapping to 37877 Unique genomic coordinates Making up 571 groups Consisting of 119 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 55916 reads mapping to 38062 Unique genomic coordinates Making up 522 groups Consisting of 109 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 58695 reads mapping to 38710 Unique genomic coordinates Making up 564 groups Consisting of 124 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 55297 reads mapping to 37173 Unique genomic coordinates Making up 535 groups Consisting of 112 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 51739 reads mapping to 38688 Unique genomic coordinates Making up 545 groups Consisting of 110 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 67599 reads mapping to 37238 Unique genomic coordinates Making up 541 groups Consisting of 106 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 91690 reads mapping to 40528 Unique genomic coordinates Making up 559 groups Consisting of 133 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 59127 reads mapping to 35809 Unique genomic coordinates Making up 559 groups Consisting of 110 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 65586 reads mapping to 34843 Unique genomic coordinates Making up 524 groups Consisting of 116 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 52556 reads mapping to 37890 Unique genomic coordinates Making up 570 groups Consisting of 119 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 66310 reads mapping to 38327 Unique genomic coordinates Making up 567 groups Consisting of 128 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 50935 reads mapping to 38965 Unique genomic coordinates Making up 610 groups Consisting of 147 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 48063 reads mapping to 36391 Unique genomic coordinates Making up 528 groups Consisting of 111 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 61942 reads mapping to 40015 Unique genomic coordinates Making up 583 groups Consisting of 135 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 48852 reads mapping to 36007 Unique genomic coordinates Making up 545 groups Consisting of 127 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 50024 reads mapping to 36716 Unique genomic coordinates Making up 525 groups Consisting of 109 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 59477 reads mapping to 35561 Unique genomic coordinates Making up 485 groups Consisting of 86 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 49787 reads mapping to 38850 Unique genomic coordinates Making up 595 groups Consisting of 123 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 57181 reads mapping to 38581 Unique genomic coordinates Making up 556 groups Consisting of 126 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 61548 reads mapping to 37014 Unique genomic coordinates Making up 549 groups Consisting of 137 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 55507 reads mapping to 36871 Unique genomic coordinates Making up 517 groups Consisting of 105 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 54684 reads mapping to 37150 Unique genomic coordinates Making up 545 groups Consisting of 127 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 67561 reads mapping to 37425 Unique genomic coordinates Making up 534 groups Consisting of 113 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 51830 reads mapping to 38335 Unique genomic coordinates Making up 545 groups Consisting of 131 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 48080 reads mapping to 35265 Unique genomic coordinates Making up 524 groups Consisting of 104 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 55580 reads mapping to 35990 Unique genomic coordinates Making up 516 groups Consisting of 100 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 68689 reads mapping to 39795 Unique genomic coordinates Making up 566 groups Consisting of 134 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 50073 reads mapping to 37234 Unique genomic coordinates Making up 542 groups Consisting of 128 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 55599 reads mapping to 39222 Unique genomic coordinates Making up 603 groups Consisting of 117 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 57111 reads mapping to 36057 Unique genomic coordinates Making up 541 groups Consisting of 123 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 51520 reads mapping to 37423 Unique genomic coordinates Making up 563 groups Consisting of 125 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 65232 reads mapping to 38000 Unique genomic coordinates Making up 574 groups Consisting of 124 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 54679 reads mapping to 38074 Unique genomic coordinates Making up 544 groups Consisting of 99 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 52843 reads mapping to 38735 Unique genomic coordinates Making up 603 groups Consisting of 128 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 49664 reads mapping to 36219 Unique genomic coordinates Making up 548 groups Consisting of 112 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 53426 reads mapping to 36970 Unique genomic coordinates Making up 543 groups Consisting of 123 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 52336 reads mapping to 38086 Unique genomic coordinates Making up 563 groups Consisting of 120 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 68420 reads mapping to 38376 Unique genomic coordinates Making up 592 groups Consisting of 135 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 48773 reads mapping to 35089 Unique genomic coordinates Making up 519 groups Consisting of 127 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 56882 reads mapping to 38804 Unique genomic coordinates Making up 557 groups Consisting of 117 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 57886 reads mapping to 38848 Unique genomic coordinates Making up 562 groups Consisting of 143 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 63778 reads mapping to 38923 Unique genomic coordinates Making up 562 groups Consisting of 125 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 54235 reads mapping to 36312 Unique genomic coordinates Making up 519 groups Consisting of 114 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 49072 reads mapping to 37292 Unique genomic coordinates Making up 558 groups Consisting of 130 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 58210 reads mapping to 38555 Unique genomic coordinates Making up 603 groups Consisting of 129 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 49717 reads mapping to 35751 Unique genomic coordinates Making up 515 groups Consisting of 115 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 58020 reads mapping to 37165 Unique genomic coordinates Making up 559 groups Consisting of 132 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 64024 reads mapping to 37627 Unique genomic coordinates Making up 547 groups Consisting of 128 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 50529 reads mapping to 36406 Unique genomic coordinates Making up 532 groups Consisting of 105 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 57046 reads mapping to 38837 Unique genomic coordinates Making up 577 groups Consisting of 137 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 61876 reads mapping to 37598 Unique genomic coordinates Making up 528 groups Consisting of 117 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 46946 reads mapping to 36784 Unique genomic coordinates Making up 513 groups Consisting of 116 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 53970 reads mapping to 36710 Unique genomic coordinates Making up 575 groups Consisting of 116 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 42029 reads mapping to 32739 Unique genomic coordinates Making up 491 groups Consisting of 109 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 53077 reads mapping to 37345 Unique genomic coordinates Making up 525 groups Consisting of 122 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 56753 reads mapping to 38544 Unique genomic coordinates Making up 556 groups Consisting of 113 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 50387 reads mapping to 36365 Unique genomic coordinates Making up 553 groups Consisting of 117 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 52314 reads mapping to 35758 Unique genomic coordinates Making up 500 groups Consisting of 104 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 49244 reads mapping to 35731 Unique genomic coordinates Making up 525 groups Consisting of 122 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 56003 reads mapping to 38176 Unique genomic coordinates Making up 548 groups Consisting of 108 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 73527 reads mapping to 37204 Unique genomic coordinates Making up 528 groups Consisting of 112 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 49768 reads mapping to 37645 Unique genomic coordinates Making up 574 groups Consisting of 105 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 70113 reads mapping to 37018 Unique genomic coordinates Making up 524 groups Consisting of 102 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 53060 reads mapping to 35542 Unique genomic coordinates Making up 507 groups Consisting of 129 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 48968 reads mapping to 36100 Unique genomic coordinates Making up 533 groups Consisting of 112 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 64175 reads mapping to 40933 Unique genomic coordinates Making up 587 groups Consisting of 151 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 55191 reads mapping to 37279 Unique genomic coordinates Making up 555 groups Consisting of 125 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 51192 reads mapping to 37606 Unique genomic coordinates Making up 553 groups Consisting of 124 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 80032 reads mapping to 35821 Unique genomic coordinates Making up 514 groups Consisting of 122 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 58375 reads mapping to 37466 Unique genomic coordinates Making up 511 groups Consisting of 98 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 53771 reads mapping to 38647 Unique genomic coordinates Making up 553 groups Consisting of 113 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 44030 reads mapping to 34183 Unique genomic coordinates Making up 471 groups Consisting of 103 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 52112 reads mapping to 37630 Unique genomic coordinates Making up 554 groups Consisting of 112 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 51147 reads mapping to 36889 Unique genomic coordinates Making up 536 groups Consisting of 126 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 53941 reads mapping to 37966 Unique genomic coordinates Making up 558 groups Consisting of 119 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 49897 reads mapping to 36923 Unique genomic coordinates Making up 541 groups Consisting of 119 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 45941 reads mapping to 35148 Unique genomic coordinates Making up 490 groups Consisting of 113 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 75346 reads mapping to 37006 Unique genomic coordinates Making up 523 groups Consisting of 111 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 97453 reads mapping to 39432 Unique genomic coordinates Making up 580 groups Consisting of 141 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 56728 reads mapping to 36450 Unique genomic coordinates Making up 497 groups Consisting of 108 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 64872 reads mapping to 38302 Unique genomic coordinates Making up 555 groups Consisting of 121 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 61302 reads mapping to 38918 Unique genomic coordinates Making up 538 groups Consisting of 106 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 50264 reads mapping to 35761 Unique genomic coordinates Making up 518 groups Consisting of 105 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 57675 reads mapping to 38549 Unique genomic coordinates Making up 556 groups Consisting of 119 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 58303 reads mapping to 36618 Unique genomic coordinates Making up 532 groups Consisting of 109 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 47566 reads mapping to 36652 Unique genomic coordinates Making up 560 groups Consisting of 131 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 54879 reads mapping to 36864 Unique genomic coordinates Making up 523 groups Consisting of 115 clusters