Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000034448-chr9---26660705-26661800 l43 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 525081 reads mapping to 301043 Unique genomic coordinates Making up 8086 groups Consisting of 2350 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000147578-chr7---91109309-91113201 l43 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 552621 reads mapping to 311840 Unique genomic coordinates Making up 8407 groups Consisting of 2413 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000031982-chr6---65094167-65094902 l43 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 607576 reads mapping to 339921 Unique genomic coordinates Making up 9073 groups Consisting of 2640 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000043141-chr8-+-113087196-113089603 l45 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 535729 reads mapping to 315970 Unique genomic coordinates Making up 8586 groups Consisting of 2469 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000037478-chr8---71598433-71599704 l43 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 560670 reads mapping to 335071 Unique genomic coordinates Making up 9021 groups Consisting of 2593 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165755-chr7-+-125892681-125893705 l45 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 562230 reads mapping to 330558 Unique genomic coordinates Making up 8997 groups Consisting of 2599 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000034279-chr8-+-123094117-123097306 l45 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 549731 reads mapping to 317044 Unique genomic coordinates Making up 8337 groups Consisting of 2439 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000032192-chr6-+-108350807-108352007 l45 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 603910 reads mapping to 329853 Unique genomic coordinates Making up 8740 groups Consisting of 2515 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000081893-chrX---20485963-20487208 l43 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 514676 reads mapping to 311695 Unique genomic coordinates Making up 8391 groups Consisting of 2348 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000048187-chr7-+-30077709-30078409 l43 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 602338 reads mapping to 314221 Unique genomic coordinates Making up 8407 groups Consisting of 2486 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000166207-chr7---122632677-122633910 l45 e 10 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 557967 reads mapping to 311000 Unique genomic coordinates Making up 8375 groups Consisting of 2414 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000138175-chr2---178135826-178139911 l45 e 11 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 689556 reads mapping to 312271 Unique genomic coordinates Making up 8356 groups Consisting of 2423 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000016138-chr8---27109201-27110912 l43 e 12 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 566361 reads mapping to 323919 Unique genomic coordinates Making up 8582 groups Consisting of 2422 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000034785-chr9---61917322-61918413 l43 e 13 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 528955 reads mapping to 330727 Unique genomic coordinates Making up 8952 groups Consisting of 2608 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000009036-chr8---23687573-23690114 l43 e 14 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 566730 reads mapping to 328266 Unique genomic coordinates Making up 8795 groups Consisting of 2493 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000138830-chr7---107801668-107804415 l45 e 15 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 574028 reads mapping to 328877 Unique genomic coordinates Making up 8610 groups Consisting of 2489 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000034244-chr8-+-75108099-75109216 l43 e 16 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 557893 reads mapping to 318444 Unique genomic coordinates Making up 8553 groups Consisting of 2479 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000085289-chr9---80241365-80242517 l43 e 17 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 527662 reads mapping to 328927 Unique genomic coordinates Making up 8746 groups Consisting of 2493 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000030910-chr5---26819282-26819818 l43 e 18 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 632687 reads mapping to 319662 Unique genomic coordinates Making up 8492 groups Consisting of 2411 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000142582-chr5-+-115319664-115321319 l45 e 19 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 825840 reads mapping to 339417 Unique genomic coordinates Making up 9096 groups Consisting of 2593 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000173960-chr7-+-8329397-8330520 l41 e 20 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 596321 reads mapping to 306898 Unique genomic coordinates Making up 8144 groups Consisting of 2418 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000132769-chr7---51806427-51809321 l43 e 21 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 609271 reads mapping to 301503 Unique genomic coordinates Making up 7980 groups Consisting of 2285 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000034243-chr8-+-97888714-97890822 l43 e 22 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 537960 reads mapping to 324818 Unique genomic coordinates Making up 8734 groups Consisting of 2536 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000059424-chr5---86667852-86669023 l43 e 23 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 630800 reads mapping to 328387 Unique genomic coordinates Making up 8733 groups Consisting of 2484 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000035043-chr9---99435714-99437224 l43 e 24 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 521693 reads mapping to 334845 Unique genomic coordinates Making up 8896 groups Consisting of 2562 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 492825 reads mapping to 317892 Unique genomic coordinates Making up 8549 groups Consisting of 2493 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000031795-chr6-+-56825163-56826326 l43 e 26 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 615906 reads mapping to 341527 Unique genomic coordinates Making up 9179 groups Consisting of 2530 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000127673-chrX-+-149472172-149473827 l45 e 27 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 502248 reads mapping to 311633 Unique genomic coordinates Making up 8357 groups Consisting of 2448 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000098640-chr9-+-64706606-64707828 l43 e 28 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 525838 reads mapping to 317551 Unique genomic coordinates Making up 8494 groups Consisting of 2411 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000113818-chr6-+-84142390-84143529 l43 e 29 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 585648 reads mapping to 311961 Unique genomic coordinates Making up 8346 groups Consisting of 2321 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000066498-chrX---35560687-35561830 l43 e 30 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 516269 reads mapping to 336637 Unique genomic coordinates Making up 9046 groups Consisting of 2595 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000026096-chr7---89117576-89120431 l43 e 31 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 586261 reads mapping to 331570 Unique genomic coordinates Making up 8901 groups Consisting of 2672 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000139500-chr5---115808709-115810132 l45 e 32 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 605078 reads mapping to 317142 Unique genomic coordinates Making up 8414 groups Consisting of 2461 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000132148-chr7-+-126080637-126081233 l45 e 33 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 562930 reads mapping to 320465 Unique genomic coordinates Making up 8688 groups Consisting of 2479 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000050139-chr9---103996911-103998134 l45 e 34 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 543900 reads mapping to 314542 Unique genomic coordinates Making up 8354 groups Consisting of 2473 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000106068-chr4---128609266-128610235 l45 e 35 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 639712 reads mapping to 323190 Unique genomic coordinates Making up 8672 groups Consisting of 2412 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000140497-chr9---122975278-122980236 l45 e 36 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 525920 reads mapping to 324063 Unique genomic coordinates Making up 8676 groups Consisting of 2569 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 495179 reads mapping to 307428 Unique genomic coordinates Making up 8304 groups Consisting of 2382 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167502-chr9---61791510-61792638 l43 e 38 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 555476 reads mapping to 308578 Unique genomic coordinates Making up 8255 groups Consisting of 2334 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000094408-chr4-+-154795809-154799439 l45 e 39 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 675804 reads mapping to 330085 Unique genomic coordinates Making up 8767 groups Consisting of 2571 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000115103-chrX-+-38893753-38894940 l43 e 40 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 511927 reads mapping to 321065 Unique genomic coordinates Making up 8756 groups Consisting of 2570 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165205-chr7-+-105646112-105650341 l45 e 41 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 563121 reads mapping to 336578 Unique genomic coordinates Making up 9029 groups Consisting of 2579 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000086778-chr8-+-4201434-4204142 l41 e 42 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 556673 reads mapping to 310155 Unique genomic coordinates Making up 8386 groups Consisting of 2417 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000045994-chr8---129471075-129473943 l45 e 43 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 532267 reads mapping to 323382 Unique genomic coordinates Making up 8638 groups Consisting of 2601 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000154361-chr5---127740535-127741744 l45 e 44 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 649092 reads mapping to 324426 Unique genomic coordinates Making up 8615 groups Consisting of 2513 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000127664-chr8-+-126859974-126861745 l45 e 45 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 562431 reads mapping to 329616 Unique genomic coordinates Making up 8855 groups Consisting of 2517 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000162658-chr8-+-123270603-123272746 l45 e 46 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 545682 reads mapping to 333888 Unique genomic coordinates Making up 8808 groups Consisting of 2570 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170172-chr9-+-102429730-102430847 l45 e 47 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 515695 reads mapping to 311532 Unique genomic coordinates Making up 8339 groups Consisting of 2362 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000133213-chr9-+-27138736-27142348 l43 e 48 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 541572 reads mapping to 317433 Unique genomic coordinates Making up 8451 groups Consisting of 2486 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000131127-chr8---128400845-128402949 l45 e 49 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 530755 reads mapping to 326254 Unique genomic coordinates Making up 8649 groups Consisting of 2551 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000068947-chr5-+-35954164-35956450 l43 e 50 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 664720 reads mapping to 324742 Unique genomic coordinates Making up 8742 groups Consisting of 2506 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 488828 reads mapping to 305098 Unique genomic coordinates Making up 8237 groups Consisting of 2348 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000126773-chr6---148136055-148137152 l45 e 52 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 586534 reads mapping to 331968 Unique genomic coordinates Making up 8870 groups Consisting of 2526 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000174022-chr7-+-93329714-93330653 l43 e 53 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 578761 reads mapping to 329123 Unique genomic coordinates Making up 8670 groups Consisting of 2552 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000172236-chr6-+-40605893-40609554 l43 e 54 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 640372 reads mapping to 332211 Unique genomic coordinates Making up 8933 groups Consisting of 2528 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000110348-chr8---49320144-49322755 l43 e 55 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 547536 reads mapping to 313013 Unique genomic coordinates Making up 8471 groups Consisting of 2361 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000042530-chrX---138515703-138520756 l45 e 56 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 505680 reads mapping to 323351 Unique genomic coordinates Making up 8730 groups Consisting of 2526 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000024171-chr6-+-49390356-49391457 l43 e 57 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 589120 reads mapping to 332342 Unique genomic coordinates Making up 9041 groups Consisting of 2635 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000026039-chrX---83021265-83022158 l43 e 58 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 507137 reads mapping to 306053 Unique genomic coordinates Making up 8083 groups Consisting of 2419 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170459-chr7---140206847-140207559 l45 e 59 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 571839 reads mapping to 314310 Unique genomic coordinates Making up 8431 groups Consisting of 2431 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000079405-chr6-+-117813095-117813660 l45 e 60 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 643724 reads mapping to 315479 Unique genomic coordinates Making up 8363 groups Consisting of 2408 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000088429-chrX-+-70773484-70776261 l43 e 61 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 512207 reads mapping to 313136 Unique genomic coordinates Making up 8272 groups Consisting of 2397 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000093120-chr8---114519860-114523362 l45 e 62 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 579414 reads mapping to 329494 Unique genomic coordinates Making up 8865 groups Consisting of 2559 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000160583-chr6-+-38451738-38462763 l43 e 63 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 611702 reads mapping to 316432 Unique genomic coordinates Making up 8480 groups Consisting of 2364 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 487785 reads mapping to 325612 Unique genomic coordinates Making up 8736 groups Consisting of 2501 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000053078-chr8-+-128193718-128197265 l45 e 65 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 544317 reads mapping to 313549 Unique genomic coordinates Making up 8362 groups Consisting of 2361 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 430677 reads mapping to 284855 Unique genomic coordinates Making up 7727 groups Consisting of 2181 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000154474-chr8-+-109861695-109863767 l45 e 67 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 547269 reads mapping to 320196 Unique genomic coordinates Making up 8617 groups Consisting of 2464 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000174210-chr7-+-71477698-71478868 l43 e 68 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 580905 reads mapping to 331582 Unique genomic coordinates Making up 8797 groups Consisting of 2540 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000138123-chrX---20634804-20639169 l43 e 69 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 513072 reads mapping to 312344 Unique genomic coordinates Making up 8278 groups Consisting of 2292 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000055036-chr9---56696466-56699770 l43 e 70 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 520026 reads mapping to 308304 Unique genomic coordinates Making up 8273 groups Consisting of 2373 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000042530-chrX---138522897-138524171 l45 e 71 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 504975 reads mapping to 311305 Unique genomic coordinates Making up 8350 groups Consisting of 2332 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000081165-chr7---112707000-112708572 l45 e 72 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 563085 reads mapping to 326636 Unique genomic coordinates Making up 8745 groups Consisting of 2564 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165457-chr7---140204701-140207173 l45 e 73 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 680854 reads mapping to 318567 Unique genomic coordinates Making up 8586 groups Consisting of 2466 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000060481-chrX---42139747-42143374 l43 e 74 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 516498 reads mapping to 326684 Unique genomic coordinates Making up 8735 groups Consisting of 2490 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000151257-chr2-+-112245731-112247675 l45 e 75 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 691826 reads mapping to 320641 Unique genomic coordinates Making up 8636 groups Consisting of 2426 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000060989-chr9---41851490-41852676 l43 e 76 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 530009 reads mapping to 305138 Unique genomic coordinates Making up 8057 groups Consisting of 2295 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000119644-chrX-+-72157756-72160077 l43 e 77 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 508244 reads mapping to 313887 Unique genomic coordinates Making up 8431 groups Consisting of 2489 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114047-chr5---44212280-44212878 l43 e 78 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 632263 reads mapping to 349158 Unique genomic coordinates Making up 9374 groups Consisting of 2727 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000119260-chr7---137320689-137321879 l45 e 79 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 560004 reads mapping to 317103 Unique genomic coordinates Making up 8457 groups Consisting of 2415 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000163694-chr9-+-59517774-59520380 l43 e 80 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 524721 reads mapping to 324920 Unique genomic coordinates Making up 8754 groups Consisting of 2485 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000028233-chr2---34894231-34895781 l43 e 81 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 728856 reads mapping to 307440 Unique genomic coordinates Making up 8263 groups Consisting of 2355 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000168984-chr7-+-20779059-20779982 l43 e 82 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 593230 reads mapping to 324354 Unique genomic coordinates Making up 8778 groups Consisting of 2499 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000166548-chr8-+-93925206-93926283 l43 e 83 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 545546 reads mapping to 333486 Unique genomic coordinates Making up 8781 groups Consisting of 2519 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 452192 reads mapping to 301508 Unique genomic coordinates Making up 8128 groups Consisting of 2288 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000093268-chr8---97829932-97830485 l43 e 85 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 538544 reads mapping to 326737 Unique genomic coordinates Making up 8871 groups Consisting of 2489 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000034881-chr9---79605797-79606886 l43 e 86 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 523259 reads mapping to 323672 Unique genomic coordinates Making up 8714 groups Consisting of 2482 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000109102-chr8---119098301-119099687 l45 e 87 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 536747 reads mapping to 330605 Unique genomic coordinates Making up 8890 groups Consisting of 2622 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000063507-chrX---57373617-57374788 l43 e 88 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 507739 reads mapping to 316285 Unique genomic coordinates Making up 8440 groups Consisting of 2415 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 479678 reads mapping to 304455 Unique genomic coordinates Making up 8154 groups Consisting of 2343 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000031183-chr5---87345663-87347390 l43 e 90 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 691356 reads mapping to 315535 Unique genomic coordinates Making up 8412 groups Consisting of 2443 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000149002-chr4-+-140873897-140875491 l45 e 91 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 925203 reads mapping to 334738 Unique genomic coordinates Making up 8921 groups Consisting of 2612 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165872-chr8---3188625-3189792 l41 e 92 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 562548 reads mapping to 316016 Unique genomic coordinates Making up 8425 groups Consisting of 2367 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000173702-chr5-+-48601495-48603093 l43 e 93 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 628623 reads mapping to 329686 Unique genomic coordinates Making up 8898 groups Consisting of 2604 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000135286-chr7-+-25612619-25613894 l43 e 94 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 604559 reads mapping to 335660 Unique genomic coordinates Making up 8991 groups Consisting of 2604 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000039610-chr9-+-119273115-119274195 l45 e 95 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 513635 reads mapping to 307342 Unique genomic coordinates Making up 8320 groups Consisting of 2385 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000032501-chr6-+-127837607-127838396 l45 e 96 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 592087 reads mapping to 333004 Unique genomic coordinates Making up 8866 groups Consisting of 2542 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000113247-chr6-+-106719114-106720497 l45 e 97 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 579576 reads mapping to 317050 Unique genomic coordinates Making up 8349 groups Consisting of 2424 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 484267 reads mapping to 319694 Unique genomic coordinates Making up 8569 groups Consisting of 2471 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000042529-chr8-+-84264697-84265899 l43 e 99 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 550486 reads mapping to 316993 Unique genomic coordinates Making up 8438 groups Consisting of 2423 clusters