Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000051849-chr3-+-134986093-134988100 l45 e 0 nr 1000000 chr ENSMUST00000043333-chr6---113321772-113323100 l45 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1088586 reads mapping to 287934 Unique genomic coordinates Making up 7058 groups Consisting of 1967 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000016125-chr7---146306069-146309401 l45 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 551792 reads mapping to 297025 Unique genomic coordinates Making up 7328 groups Consisting of 1941 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167588-chr8-+-127351499-127358602 l45 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 540913 reads mapping to 320297 Unique genomic coordinates Making up 7951 groups Consisting of 2186 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000124565-chr9---72827531-72828503 l43 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 528840 reads mapping to 299968 Unique genomic coordinates Making up 7372 groups Consisting of 2024 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000126834-chr8---125797548-125799704 l45 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 546670 reads mapping to 310505 Unique genomic coordinates Making up 7766 groups Consisting of 2119 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000075068-chr7-+-35727158-35728205 l43 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 573539 reads mapping to 315149 Unique genomic coordinates Making up 7920 groups Consisting of 2139 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000032146-chr6---97255973-97257306 l43 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 605829 reads mapping to 302983 Unique genomic coordinates Making up 7538 groups Consisting of 2074 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000081170-chr5---74030122-74032607 l43 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 628260 reads mapping to 309714 Unique genomic coordinates Making up 7625 groups Consisting of 2086 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000037776-chr17-+-29174935-29179208 l44 e 8 nr 1000000 chr ENSMUST00000167004-chr8---24283418-24286608 l43 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1062000 reads mapping to 298293 Unique genomic coordinates Making up 7369 groups Consisting of 2072 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000019882-chr7-+-31016967-31018409 l43 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 573966 reads mapping to 296583 Unique genomic coordinates Making up 7415 groups Consisting of 1959 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000125578-chr4---124008649-124009710 l45 e 10 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 657416 reads mapping to 292317 Unique genomic coordinates Making up 7265 groups Consisting of 2024 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000130216-chr17-+-29177220-29180311 l44 e 11 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 930850 reads mapping to 298577 Unique genomic coordinates Making up 7314 groups Consisting of 2020 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000033100-chr7-+-52877181-52882612 l43 e 12 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 580932 reads mapping to 310114 Unique genomic coordinates Making up 7655 groups Consisting of 2091 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000018122-chr6---23536877-23538113 l43 e 13 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 590203 reads mapping to 307510 Unique genomic coordinates Making up 7733 groups Consisting of 2081 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000120753-chr7---87539721-87544314 l43 e 14 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 578584 reads mapping to 315688 Unique genomic coordinates Making up 7766 groups Consisting of 2156 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000032891-chr7---125288345-125290415 l45 e 15 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 562307 reads mapping to 309410 Unique genomic coordinates Making up 7760 groups Consisting of 2046 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000147737-chr5---124741829-124742916 l45 e 16 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 610086 reads mapping to 304275 Unique genomic coordinates Making up 7624 groups Consisting of 2079 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000037709-chr6---146569897-146571017 l45 e 17 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 593868 reads mapping to 314133 Unique genomic coordinates Making up 7837 groups Consisting of 2139 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000101065-chr6-+-113408889-113410718 l45 e 18 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 590190 reads mapping to 304152 Unique genomic coordinates Making up 7606 groups Consisting of 2011 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000089296-chr7---111794943-111795819 l45 e 19 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 583571 reads mapping to 322336 Unique genomic coordinates Making up 7954 groups Consisting of 2173 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 483038 reads mapping to 287677 Unique genomic coordinates Making up 7219 groups Consisting of 1930 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000084717-chr7---117607602-117608721 l45 e 21 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 550922 reads mapping to 284695 Unique genomic coordinates Making up 6982 groups Consisting of 1841 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025815-chr19---25029326-25030422 l44 e 22 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 782439 reads mapping to 307375 Unique genomic coordinates Making up 7731 groups Consisting of 2117 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000173609-chr6---110589747-110592423 l45 e 23 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 606587 reads mapping to 309900 Unique genomic coordinates Making up 7743 groups Consisting of 2049 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161213-chr7---145439555-145440624 l45 e 24 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 548954 reads mapping to 313842 Unique genomic coordinates Making up 7927 groups Consisting of 2103 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000001520-chr8-+-126010759-126012725 l45 e 25 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 551091 reads mapping to 300001 Unique genomic coordinates Making up 7359 groups Consisting of 2042 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000061468-chr7---134848492-134849826 l45 e 26 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 556517 reads mapping to 318020 Unique genomic coordinates Making up 7981 groups Consisting of 2128 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000111803-chr6---142309896-142314627 l45 e 27 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 566227 reads mapping to 292865 Unique genomic coordinates Making up 7354 groups Consisting of 1978 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000061755-chrX---35772684-35775528 l43 e 28 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 515000 reads mapping to 301221 Unique genomic coordinates Making up 7484 groups Consisting of 1994 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000124292-chr4---147296572-147301729 l45 e 29 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 678798 reads mapping to 301750 Unique genomic coordinates Making up 7401 groups Consisting of 1959 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000098524-chr3-+-145852724-145853930 l45 e 30 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 726039 reads mapping to 318682 Unique genomic coordinates Making up 7939 groups Consisting of 2152 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165057-chr3---101397626-101399531 l45 e 31 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 756332 reads mapping to 311221 Unique genomic coordinates Making up 7771 groups Consisting of 2003 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000133771-chr7-+-73851411-73856132 l43 e 32 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 569756 reads mapping to 299627 Unique genomic coordinates Making up 7472 groups Consisting of 1999 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000044746-chr5---3893375-3893933 l41 e 33 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 610497 reads mapping to 304096 Unique genomic coordinates Making up 7575 groups Consisting of 2093 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 478034 reads mapping to 294776 Unique genomic coordinates Making up 7478 groups Consisting of 2038 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 482270 reads mapping to 301676 Unique genomic coordinates Making up 7563 groups Consisting of 1973 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000034947-chr9-+-65912794-65914436 l43 e 36 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 566073 reads mapping to 305763 Unique genomic coordinates Making up 7699 groups Consisting of 2028 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000034522-chr9-+-40588696-40589837 l43 e 37 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 542571 reads mapping to 291010 Unique genomic coordinates Making up 7276 groups Consisting of 2000 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000097352-chr17-+-31741198-31744638 l44 e 38 nr 1000000 chr ENSMUST00000097352-chr17-+-31741198-31744638 l44 e 38 nr 1500000 chr ENSMUST00000164114-chr2---76897097-76898238 l43 e 38 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1726519 reads mapping to 295447 Unique genomic coordinates Making up 7342 groups Consisting of 2018 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000084488-chr7-+-142328998-142330339 l45 e 39 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 557095 reads mapping to 305362 Unique genomic coordinates Making up 7668 groups Consisting of 2097 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000068045-chr7---29696009-29697840 l43 e 40 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 587511 reads mapping to 304252 Unique genomic coordinates Making up 7668 groups Consisting of 2152 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000112923-chr6-+-115832165-115833341 l45 e 41 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 643716 reads mapping to 317462 Unique genomic coordinates Making up 8098 groups Consisting of 2146 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000038739-chr8---113820535-113822042 l45 e 42 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 559744 reads mapping to 290386 Unique genomic coordinates Making up 7313 groups Consisting of 2023 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000115781-chr18-+-34471159-34481843 l44 e 43 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 889160 reads mapping to 311928 Unique genomic coordinates Making up 7726 groups Consisting of 2168 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000128299-chr7---4395339-4397244 l41 e 44 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 590676 reads mapping to 302693 Unique genomic coordinates Making up 7483 groups Consisting of 2049 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000113333-chr5---87318792-87323345 l43 e 45 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 641405 reads mapping to 312734 Unique genomic coordinates Making up 7712 groups Consisting of 2086 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000077990-chr8-+-87213188-87215946 l43 e 46 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 572054 reads mapping to 318447 Unique genomic coordinates Making up 7943 groups Consisting of 2082 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000129050-chr6---144151814-144152947 l45 e 47 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 583964 reads mapping to 297019 Unique genomic coordinates Making up 7507 groups Consisting of 2019 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000171627-chr4---113339286-113340348 l45 e 48 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 660672 reads mapping to 293959 Unique genomic coordinates Making up 7312 groups Consisting of 1992 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000135299-chr4-+-132222570-132223649 l45 e 49 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 647764 reads mapping to 309047 Unique genomic coordinates Making up 7717 groups Consisting of 2113 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000044195-chr7---125727618-125728250 l45 e 50 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 581561 reads mapping to 305803 Unique genomic coordinates Making up 7600 groups Consisting of 2083 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000034311-chr8-+-73201177-73202651 l43 e 51 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 577813 reads mapping to 287152 Unique genomic coordinates Making up 7113 groups Consisting of 1970 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000159985-chr9---14890084-14891252 l43 e 52 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 573415 reads mapping to 313574 Unique genomic coordinates Making up 7822 groups Consisting of 2148 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000131459-chr3-+-27052948-27054353 l43 e 53 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 703343 reads mapping to 308735 Unique genomic coordinates Making up 7664 groups Consisting of 2119 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000116514-chr6---136776041-136776754 l45 e 54 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 578329 reads mapping to 312613 Unique genomic coordinates Making up 7676 groups Consisting of 2118 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000053970-chrX---46025924-46027655 l43 e 55 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 508528 reads mapping to 294230 Unique genomic coordinates Making up 7271 groups Consisting of 1935 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000039135-chr14---68369985-68377756 l44 e 56 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 861054 reads mapping to 306335 Unique genomic coordinates Making up 7574 groups Consisting of 2103 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000036019-chr5-+-97076017-97077157 l43 e 57 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 604368 reads mapping to 306265 Unique genomic coordinates Making up 7674 groups Consisting of 2025 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000110829-chr5---140541268-140542458 l45 e 58 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 652214 reads mapping to 289750 Unique genomic coordinates Making up 7192 groups Consisting of 1980 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000159286-chr8-+-107898804-107906759 l45 e 59 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 537413 reads mapping to 291774 Unique genomic coordinates Making up 7362 groups Consisting of 2028 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000037798-chr9---64795140-64798060 l43 e 60 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 535350 reads mapping to 295475 Unique genomic coordinates Making up 7346 groups Consisting of 2003 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 480781 reads mapping to 296180 Unique genomic coordinates Making up 7462 groups Consisting of 1945 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165322-chr9---59253032-59254162 l43 e 62 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 523545 reads mapping to 312638 Unique genomic coordinates Making up 7804 groups Consisting of 2144 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000050732-chr7-+-104605604-104608063 l45 e 63 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 558315 reads mapping to 295889 Unique genomic coordinates Making up 7361 groups Consisting of 1949 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000035488-chr19---39512204-39513364 l44 e 64 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 763814 reads mapping to 311533 Unique genomic coordinates Making up 7885 groups Consisting of 2082 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000160894-chr6---77602499-77603665 l43 e 65 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 703746 reads mapping to 293293 Unique genomic coordinates Making up 7267 groups Consisting of 1920 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 475280 reads mapping to 270603 Unique genomic coordinates Making up 6709 groups Consisting of 1849 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000073406-chr7---88642618-88643167 l43 e 67 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 564211 reads mapping to 299608 Unique genomic coordinates Making up 7570 groups Consisting of 2049 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000085679-chr5-+-145882026-145890568 l45 e 68 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 628882 reads mapping to 314050 Unique genomic coordinates Making up 7843 groups Consisting of 2115 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000002084-chrX-+-70961936-70963769 l43 e 69 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 508390 reads mapping to 293585 Unique genomic coordinates Making up 7296 groups Consisting of 1969 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000116429-chr8---108484076-108485170 l45 e 70 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 534196 reads mapping to 292135 Unique genomic coordinates Making up 7276 groups Consisting of 1994 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000063376-chr6-+-83391749-83393171 l43 e 71 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 593445 reads mapping to 299502 Unique genomic coordinates Making up 7586 groups Consisting of 2068 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000060655-chr6---54883054-54884972 l43 e 72 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 619425 reads mapping to 309626 Unique genomic coordinates Making up 7684 groups Consisting of 2102 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000088842-chr5---5541802-5544673 l41 e 73 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 640893 reads mapping to 300381 Unique genomic coordinates Making up 7515 groups Consisting of 2072 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000073339-chrX-+-34144283-34146074 l43 e 74 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 515956 reads mapping to 300906 Unique genomic coordinates Making up 7537 groups Consisting of 1931 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000039861-chr7---50782826-50786175 l43 e 75 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 583528 reads mapping to 308820 Unique genomic coordinates Making up 7734 groups Consisting of 2091 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000142109-chrX---102568333-102571676 l45 e 76 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 503828 reads mapping to 291901 Unique genomic coordinates Making up 7243 groups Consisting of 1969 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000075245-chr9---73546408-73547577 l43 e 77 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 528168 reads mapping to 297757 Unique genomic coordinates Making up 7483 groups Consisting of 2039 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000061390-chr7---17399913-17400478 l43 e 78 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 616788 reads mapping to 324720 Unique genomic coordinates Making up 8055 groups Consisting of 2186 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000014694-chr6---92156539-92157679 l43 e 79 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 585006 reads mapping to 300016 Unique genomic coordinates Making up 7470 groups Consisting of 1995 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000029603-chr3-+-123189375-123190580 l45 e 80 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 795614 reads mapping to 310521 Unique genomic coordinates Making up 7661 groups Consisting of 2023 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000110508-chr5---149697302-149698381 l45 e 81 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 627167 reads mapping to 292923 Unique genomic coordinates Making up 7252 groups Consisting of 1991 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000144458-chr8-+-122470475-122473182 l45 e 82 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 560171 reads mapping to 311811 Unique genomic coordinates Making up 7886 groups Consisting of 2134 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000086615-chr5-+-113662867-113664083 l45 e 83 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 616788 reads mapping to 316231 Unique genomic coordinates Making up 7899 groups Consisting of 2161 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000004497-chr8---75639802-75640884 l43 e 84 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 539481 reads mapping to 287174 Unique genomic coordinates Making up 7219 groups Consisting of 2019 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000002825-chr5-+-135673541-135674685 l45 e 85 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 625884 reads mapping to 307931 Unique genomic coordinates Making up 7634 groups Consisting of 2051 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000077680-chrX-+-7339784-7340686 l41 e 86 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 523364 reads mapping to 304898 Unique genomic coordinates Making up 7633 groups Consisting of 2059 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000032259-chr6---129224740-129225387 l45 e 87 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 590855 reads mapping to 313067 Unique genomic coordinates Making up 7851 groups Consisting of 2170 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000094002-chr7---141484411-141485588 l45 e 88 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 578743 reads mapping to 300406 Unique genomic coordinates Making up 7519 groups Consisting of 2057 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000131154-chr7---52612629-52617689 l43 e 89 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 566840 reads mapping to 288107 Unique genomic coordinates Making up 7124 groups Consisting of 1869 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000134245-chr7---127816953-127819290 l45 e 90 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 616646 reads mapping to 298444 Unique genomic coordinates Making up 7350 groups Consisting of 1995 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000111949-chr5-+-118205760-118206891 l45 e 91 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 705149 reads mapping to 319686 Unique genomic coordinates Making up 7971 groups Consisting of 2104 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 475240 reads mapping to 300413 Unique genomic coordinates Making up 7552 groups Consisting of 1986 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000031322-chr5-+-91229776-91232093 l43 e 93 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 619307 reads mapping to 309935 Unique genomic coordinates Making up 7807 groups Consisting of 2078 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000135050-chr9---61801288-61804594 l43 e 94 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 527487 reads mapping to 312731 Unique genomic coordinates Making up 7909 groups Consisting of 2107 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000040241-chr8---113544029-113545495 l45 e 95 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 537553 reads mapping to 288090 Unique genomic coordinates Making up 7180 groups Consisting of 1911 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000067925-chr8-+-59990640-59994796 l43 e 96 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 566115 reads mapping to 308490 Unique genomic coordinates Making up 7744 groups Consisting of 2090 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000143692-chr7-+-129733059-129734197 l45 e 97 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 554752 reads mapping to 301726 Unique genomic coordinates Making up 7527 groups Consisting of 2090 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000084715-chr9---123734127-123740998 l45 e 98 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 515800 reads mapping to 304023 Unique genomic coordinates Making up 7659 groups Consisting of 2121 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000174768-chr5---33653082-33653799 l43 e 99 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 627302 reads mapping to 303063 Unique genomic coordinates Making up 7515 groups Consisting of 2045 clusters