Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000045827-chr13---68708381-68710600 l44 e 0 nr 1000000 chr ENSMUST00000136593-chr4-+-115428538-115430900 l45 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1366252 reads mapping to 460267 Unique genomic coordinates Making up 12897 groups Consisting of 4152 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025337-chr18---38012457-38016701 l44 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 997432 reads mapping to 465523 Unique genomic coordinates Making up 13029 groups Consisting of 4082 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000095945-chr14---47889310-47890402 l44 e 2 nr 1000000 chr ENSMUST00000118836-chr4-+-108404347-108404902 l45 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1325399 reads mapping to 514193 Unique genomic coordinates Making up 14100 groups Consisting of 4646 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000127557-chr17---22998696-23002803 l44 e 3 nr 1000000 chr ENSMUST00000031719-chr6-+-28383888-28386703 l43 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1454731 reads mapping to 486055 Unique genomic coordinates Making up 13245 groups Consisting of 4298 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000044103-chr16-+-10173874-10175004 l44 e 4 nr 1000000 chr ENSMUST00000098508-chr7-+-48902361-48906904 l43 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1207411 reads mapping to 508345 Unique genomic coordinates Making up 14037 groups Consisting of 4562 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000039894-chr13---14131305-14131905 l44 e 5 nr 1000000 chr ENSMUST00000100820-chr14---26706998-26709005 l44 e 5 nr 1500000 chr ENSMUST00000079300-chr3-+-62142266-62145805 l43 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1821574 reads mapping to 507577 Unique genomic coordinates Making up 14154 groups Consisting of 4482 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000045108-chr1-+-188791295-188794506 l45 e 6 nr 1000000 chr ENSMUST00000101427-chr11-+-29396843-29399906 l44 e 6 nr 1500000 chr ENSMUST00000074519-chr3-+-96361880-96365806 l43 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1902235 reads mapping to 475905 Unique genomic coordinates Making up 13141 groups Consisting of 4172 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000131246-chr11-+-86298232-86299607 l44 e 7 nr 1000000 chr ENSMUST00000032898-chr14-+-121320848-121323307 l46 e 7 nr 1500000 chr ENSMUST00000168342-chr6-+-113488755-113489807 l45 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1713673 reads mapping to 499829 Unique genomic coordinates Making up 13609 groups Consisting of 4376 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161205-chr17---13012685-13013708 l44 e 8 nr 1000000 chr ENSMUST00000112817-chr5---104304260-104305808 l45 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1494304 reads mapping to 479896 Unique genomic coordinates Making up 13280 groups Consisting of 4201 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000089230-chr14---67657212-67658309 l44 e 9 nr 1000000 chr ENSMUST00000055081-chr2---94172450-94173709 l43 e 9 nr 1500000 chr ENSMUST00000053785-chr9---95623014-95624209 l43 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1562623 reads mapping to 488007 Unique genomic coordinates Making up 13311 groups Consisting of 4382 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000087639-chr17-+-33569841-33571210 l44 e 10 nr 1000000 chr ENSMUST00000103221-chr4-+-147841859-147845310 l45 e 10 nr 1500000 chr ENSMUST00000055296-chr6-+-71913168-71918510 l43 e 10 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1677638 reads mapping to 470727 Unique genomic coordinates Making up 13084 groups Consisting of 4151 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000072008-chr18-+-42263216-42264311 l44 e 11 nr 1000000 chr ENSMUST00000121189-chr9---86315948-86317111 l43 e 11 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1252246 reads mapping to 489216 Unique genomic coordinates Making up 13320 groups Consisting of 4412 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000164444-chr12-+-74685783-74687012 l44 e 12 nr 1000000 chr ENSMUST00000110538-chr2---122127927-122131512 l45 e 12 nr 1500000 chr ENSMUST00000167014-chr9---86717723-86720412 l43 e 12 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1712149 reads mapping to 504850 Unique genomic coordinates Making up 13579 groups Consisting of 4337 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000163715-chr14---25061558-25062613 l44 e 13 nr 1000000 chr ENSMUST00000160212-chr6-+-114348080-114348913 l45 e 13 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1184143 reads mapping to 503054 Unique genomic coordinates Making up 13792 groups Consisting of 4416 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000136160-chr17-+-9086156-9086814 l42 e 14 nr 1000000 chr ENSMUST00000159397-chr6---119903668-119906714 l45 e 14 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1267929 reads mapping to 503270 Unique genomic coordinates Making up 13875 groups Consisting of 4521 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000040562-chr15-+-18936807-18937915 l44 e 15 nr 1000000 chr ENSMUST00000160791-chr5---21396880-21398015 l43 e 15 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1402800 reads mapping to 512714 Unique genomic coordinates Making up 14010 groups Consisting of 4634 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000145830-chr15---75879370-75881216 l44 e 16 nr 1000000 chr ENSMUST00000032454-chr6-+-114262933-114267516 l45 e 16 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1306552 reads mapping to 494520 Unique genomic coordinates Making up 13459 groups Consisting of 4400 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000162585-chr15-+-4677175-4677817 l42 e 17 nr 1000000 chr ENSMUST00000164290-chr2---28467801-28471417 l43 e 17 nr 1500000 chr ENSMUST00000137488-chr7---148614674-148615317 l45 e 17 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1731024 reads mapping to 506417 Unique genomic coordinates Making up 13882 groups Consisting of 4503 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000111955-chr14-+-34132889-34133618 l44 e 18 nr 1000000 chr ENSMUST00000117994-chr16-+-49012788-49019818 l44 e 18 nr 1500000 chr ENSMUST00000042163-chr5-+-121888237-121892418 l45 e 18 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1803297 reads mapping to 499000 Unique genomic coordinates Making up 13631 groups Consisting of 4476 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000063530-chr15---63722820-63727319 l44 e 19 nr 1000000 chr ENSMUST00000071563-chr6-+-127556708-127557819 l45 e 19 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1343265 reads mapping to 512011 Unique genomic coordinates Making up 14200 groups Consisting of 4575 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000064391-chr15---90345839-90347020 l44 e 20 nr 1000000 chr ENSMUST00000111663-chr6-+-146545317-146547720 l45 e 20 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1168552 reads mapping to 469807 Unique genomic coordinates Making up 12955 groups Consisting of 4173 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022136-chr13---101393875-101395021 l46 e 21 nr 1000000 chr ENSMUST00000138966-chr4---112534159-112535221 l45 e 21 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1220199 reads mapping to 460374 Unique genomic coordinates Making up 12595 groups Consisting of 4070 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000136841-chr10-+-42585320-42586022 l44 e 22 nr 1000000 chr ENSMUST00000023336-chr16---46063530-46064622 l44 e 22 nr 1500000 chr ENSMUST00000148081-chr4---120440198-120440822 l45 e 22 nr 2000000 chr ENSMUST00000034131-chr8---87786710-87788722 l43 e 22 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2137208 reads mapping to 501683 Unique genomic coordinates Making up 13848 groups Consisting of 4631 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000090287-chr16---14212111-14213323 l44 e 23 nr 1000000 chr ENSMUST00000125727-chr8---71111753-71112823 l43 e 23 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1075530 reads mapping to 502435 Unique genomic coordinates Making up 13692 groups Consisting of 4435 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000091853-chr13---3884794-3888724 l42 e 24 nr 1000000 chr ENSMUST00000075836-chr4---98644055-98645224 l43 e 24 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1273875 reads mapping to 508233 Unique genomic coordinates Making up 14028 groups Consisting of 4496 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000024707-chr17---43613526-43616725 l44 e 25 nr 1000000 chr ENSMUST00000031899-chr6---41646848-41649725 l43 e 25 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1262104 reads mapping to 482542 Unique genomic coordinates Making up 13319 groups Consisting of 4301 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000110244-chr15---52938533-52939626 l44 e 26 nr 1000000 chr ENSMUST00000029459-chr3-+-99994309-99996126 l43 e 26 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1343128 reads mapping to 517484 Unique genomic coordinates Making up 14311 groups Consisting of 4560 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000096045-chr16-+-48290627-48291927 l44 e 27 nr 1000000 chr ENSMUST00000167866-chr9-+-54437165-54438227 l43 e 27 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1058054 reads mapping to 474401 Unique genomic coordinates Making up 12896 groups Consisting of 4198 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000128069-chr14---69125411-69128028 l44 e 28 nr 1000000 chr ENSMUST00000134661-chr2-+-118639739-118640728 l45 e 28 nr 1500000 chr ENSMUST00000070980-chr7---138288861-138289828 l45 e 28 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1747467 reads mapping to 487544 Unique genomic coordinates Making up 13560 groups Consisting of 4316 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000142242-chr11---121768764-121770129 l46 e 29 nr 1000000 chr ENSMUST00000037181-chr12---68321457-68323529 l44 e 29 nr 1500000 chr ENSMUST00000043498-chr18---38102610-38105929 l44 e 29 nr 2000000 chr ENSMUST00000169499-chrX---33963596-33964529 l43 e 29 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2023639 reads mapping to 483628 Unique genomic coordinates Making up 13276 groups Consisting of 4271 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000124093-chr13-+-41224295-41225730 l44 e 30 nr 1000000 chr ENSMUST00000134844-chr4-+-108303701-108305030 l45 e 30 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1345851 reads mapping to 513681 Unique genomic coordinates Making up 14237 groups Consisting of 4614 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000138539-chr16-+-45736616-45737431 l44 e 31 nr 1000000 chr ENSMUST00000138644-chr5-+-152196566-152198731 l45 e 31 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1260383 reads mapping to 516678 Unique genomic coordinates Making up 13890 groups Consisting of 4441 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000159086-chr17---32924583-32925232 l44 e 32 nr 1000000 chr ENSMUST00000135159-chr9-+-66304744-66306732 l43 e 32 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1127544 reads mapping to 484199 Unique genomic coordinates Making up 13405 groups Consisting of 4373 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000002881-chr12---114176067-114178033 l46 e 33 nr 1000000 chr ENSMUST00000151716-chr3---35860649-35868033 l43 e 33 nr 1500000 chr ENSMUST00000144376-chr9---96465935-96471733 l43 e 33 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1542418 reads mapping to 496004 Unique genomic coordinates Making up 13687 groups Consisting of 4409 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000095585-chr13---81713458-81714634 l44 e 34 nr 1000000 chr ENSMUST00000142307-chr5-+-135684278-135685534 l45 e 34 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1215013 reads mapping to 485887 Unique genomic coordinates Making up 13303 groups Consisting of 4319 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000073724-chr17-+-27070072-27074835 l44 e 35 nr 1000000 chr ENSMUST00000037380-chr5---68009379-68014435 l43 e 35 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1293249 reads mapping to 492915 Unique genomic coordinates Making up 13556 groups Consisting of 4311 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000016685-chr15-+-85223267-85224436 l44 e 36 nr 1000000 chr ENSMUST00000067831-chr6---51233531-51236436 l43 e 36 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1287117 reads mapping to 497116 Unique genomic coordinates Making up 13631 groups Consisting of 4482 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000066140-chr18-+-37974733-37978137 l44 e 37 nr 1000000 chr ENSMUST00000123128-chr9-+-75034829-75035837 l43 e 37 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1058997 reads mapping to 479628 Unique genomic coordinates Making up 13255 groups Consisting of 4325 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000120503-chr13-+-22558176-22559938 l44 e 38 nr 1000000 chr ENSMUST00000035931-chr3---49556706-49561238 l43 e 38 nr 1500000 chr ENSMUST00000153815-chr9---79620359-79625638 l43 e 38 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1557799 reads mapping to 481896 Unique genomic coordinates Making up 13238 groups Consisting of 4286 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000149824-chr15---77257666-77258739 l44 e 39 nr 1000000 chr ENSMUST00000071024-chr6---87420007-87421139 l43 e 39 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1215091 reads mapping to 497840 Unique genomic coordinates Making up 13843 groups Consisting of 4452 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000162830-chr15---47678153-47679340 l44 e 40 nr 1000000 chr ENSMUST00000020400-chr6-+-77192683-77195940 l43 e 40 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1208856 reads mapping to 487939 Unique genomic coordinates Making up 13522 groups Consisting of 4327 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000074067-chr13-+-23877246-23878341 l44 e 41 nr 1000000 chr ENSMUST00000065509-chr6---71569452-71571941 l43 e 41 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1328808 reads mapping to 513625 Unique genomic coordinates Making up 14075 groups Consisting of 4491 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000168608-chr16---85120275-85121442 l44 e 42 nr 1000000 chr ENSMUST00000073961-chr7-+-142869388-142871442 l45 e 42 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1088307 reads mapping to 469989 Unique genomic coordinates Making up 13087 groups Consisting of 4151 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000067538-chr17---56555804-56559643 l44 e 43 nr 1000000 chr ENSMUST00000070117-chr9---114519263-114520343 l45 e 43 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1036453 reads mapping to 497945 Unique genomic coordinates Making up 13796 groups Consisting of 4394 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170811-chr18-+-38458908-38460744 l44 e 44 nr 1000000 chr ENSMUST00000168925-chr7-+-58827870-58828944 l43 e 44 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1163722 reads mapping to 491117 Unique genomic coordinates Making up 13553 groups Consisting of 4300 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000042957-chr15---101397875-101399345 l46 e 45 nr 1000000 chr ENSMUST00000033827-chr8-+-13415454-13421945 l43 e 45 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1187817 reads mapping to 506603 Unique genomic coordinates Making up 13798 groups Consisting of 4452 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022264-chr14-+-12386046-12387346 l44 e 46 nr 1000000 chr ENSMUST00000102729-chr4-+-109050370-109051446 l45 e 46 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1365564 reads mapping to 507537 Unique genomic coordinates Making up 13874 groups Consisting of 4372 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000019441-chr14-+-56364530-56365947 l44 e 47 nr 1000000 chr ENSMUST00000167084-chr5---134851477-134853447 l45 e 47 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1188056 reads mapping to 481505 Unique genomic coordinates Making up 13101 groups Consisting of 4233 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000002914-chr17-+-56201008-56205348 l44 e 48 nr 1000000 chr ENSMUST00000034941-chr9-+-92384290-92388348 l43 e 48 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1048938 reads mapping to 484847 Unique genomic coordinates Making up 13543 groups Consisting of 4395 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161371-chr10-+-122322764-122323349 l46 e 49 nr 1000000 chr ENSMUST00000161371-chr10-+-122322764-122323349 l46 e 49 nr 1500000 chr ENSMUST00000023312-chr16---52252738-52253849 l44 e 49 nr 2000000 chr ENSMUST00000026559-chr7---148054888-148056049 l45 e 49 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2106040 reads mapping to 497232 Unique genomic coordinates Making up 13702 groups Consisting of 4423 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000037005-chr16-+-45574931-45576050 l44 e 50 nr 1000000 chr ENSMUST00000106758-chr4-+-106739593-106740150 l45 e 50 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1480600 reads mapping to 501963 Unique genomic coordinates Making up 13632 groups Consisting of 4546 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000124830-chr13-+-38267765-38269651 l44 e 51 nr 1000000 chr ENSMUST00000001454-chr3-+-88128945-88131051 l43 e 51 nr 1500000 chr ENSMUST00000101670-chrX-+-23380395-23383151 l43 e 51 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1993120 reads mapping to 468815 Unique genomic coordinates Making up 12845 groups Consisting of 4121 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025099-chr17---84838835-84841652 l44 e 52 nr 1000000 chr ENSMUST00000166114-chr5---16732014-16733752 l43 e 52 nr 1500000 chr ENSMUST00000047677-chr5-+-108600132-108601352 l45 e 52 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1836517 reads mapping to 515198 Unique genomic coordinates Making up 14060 groups Consisting of 4644 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000024869-chr17-+-74787030-74790453 l44 e 53 nr 1000000 chr ENSMUST00000170998-chr9-+-44932525-44938153 l43 e 53 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1150055 reads mapping to 504187 Unique genomic coordinates Making up 13822 groups Consisting of 4493 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023151-chr16---23965138-23966854 l44 e 54 nr 1000000 chr ENSMUST00000084708-chr7-+-119232539-119233654 l45 e 54 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1116256 reads mapping to 510086 Unique genomic coordinates Making up 14008 groups Consisting of 4543 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000049714-chr11-+-83832362-83833955 l44 e 55 nr 1000000 chr ENSMUST00000049714-chr11-+-83832362-83833955 l44 e 55 nr 1500000 chr ENSMUST00000003351-chr11---115110483-115113055 l46 e 55 nr 2000000 chr ENSMUST00000109140-chr2---172181690-172183255 l45 e 55 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2364468 reads mapping to 478406 Unique genomic coordinates Making up 13216 groups Consisting of 4212 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000039135-chr14---68369985-68377756 l44 e 56 nr 1000000 chr ENSMUST00000030311-chr4-+-94319118-94320256 l43 e 56 nr 1500000 chr ENSMUST00000034987-chr9-+-86417331-86418456 l43 e 56 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1757523 reads mapping to 501912 Unique genomic coordinates Making up 13626 groups Consisting of 4480 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000021405-chr16-+-20717738-20719657 l44 e 57 nr 1000000 chr ENSMUST00000026922-chr7---88745367-88757757 l43 e 57 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1128588 reads mapping to 511018 Unique genomic coordinates Making up 13992 groups Consisting of 4655 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000057767-chr16---38773297-38774758 l44 e 58 nr 1000000 chr ENSMUST00000168578-chr7---4740107-4741258 l41 e 58 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1245924 reads mapping to 472819 Unique genomic coordinates Making up 13058 groups Consisting of 4234 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000040729-chr17-+-25270336-25271059 l44 e 59 nr 1000000 chr ENSMUST00000168164-chr8---13104275-13105459 l43 e 59 nr 1500000 chr ENSMUST00000168164-chr8---13104275-13105459 l43 e 59 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1644842 reads mapping to 480606 Unique genomic coordinates Making up 13110 groups Consisting of 4421 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000131766-chr17---24299187-24300660 l44 e 60 nr 1000000 chr ENSMUST00000013299-chr8---108227555-108229160 l45 e 60 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1268746 reads mapping to 480962 Unique genomic coordinates Making up 13244 groups Consisting of 4327 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170651-chr17-+-30826626-30827761 l44 e 61 nr 1000000 chr ENSMUST00000101534-chr6---36759394-36761361 l43 e 61 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1157335 reads mapping to 484706 Unique genomic coordinates Making up 13368 groups Consisting of 4359 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022875-chr15-+-27482944-27484062 l44 e 62 nr 1000000 chr ENSMUST00000025649-chr19-+-10680835-10683462 l44 e 62 nr 1500000 chr ENSMUST00000110649-chr8---26023931-26025362 l43 e 62 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1702452 reads mapping to 498921 Unique genomic coordinates Making up 13782 groups Consisting of 4346 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000166264-chr14-+-16272449-16273663 l44 e 63 nr 1000000 chr ENSMUST00000160583-chr6-+-38451738-38462763 l43 e 63 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1371412 reads mapping to 479164 Unique genomic coordinates Making up 13183 groups Consisting of 4150 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000002289-chr14-+-102089289-102090364 l46 e 64 nr 1000000 chr ENSMUST00000165097-chr8---13080764-13081864 l43 e 64 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1498282 reads mapping to 502234 Unique genomic coordinates Making up 13829 groups Consisting of 4492 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000024570-chr17---6059703-6060865 l42 e 65 nr 1000000 chr ENSMUST00000127608-chr5-+-122821885-122823165 l45 e 65 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1348363 reads mapping to 478170 Unique genomic coordinates Making up 13209 groups Consisting of 4169 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000113132-chr2---34079425-34080666 l43 e 66 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 856391 reads mapping to 436089 Unique genomic coordinates Making up 12049 groups Consisting of 3722 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023707-chr16-+-90224101-90226567 l44 e 67 nr 1000000 chr ENSMUST00000084731-chr7-+-117182178-117183267 l45 e 67 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1111871 reads mapping to 493716 Unique genomic coordinates Making up 13485 groups Consisting of 4451 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023734-chr15-+-98620288-98624268 l44 e 68 nr 1000000 chr ENSMUST00000094120-chr5-+-145558617-145559768 l45 e 68 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1284904 reads mapping to 504364 Unique genomic coordinates Making up 14023 groups Consisting of 4384 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000069936-chr16-+-56270393-56273869 l44 e 69 nr 1000000 chr ENSMUST00000153268-chr6---142201048-142202269 l45 e 69 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1406741 reads mapping to 468705 Unique genomic coordinates Making up 13080 groups Consisting of 4086 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000076891-chr19---55387179-55388270 l44 e 70 nr 1000000 chr ENSMUST00000169879-chr9-+-56919847-56920370 l43 e 70 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1101810 reads mapping to 460189 Unique genomic coordinates Making up 12993 groups Consisting of 4131 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000148941-chr13-+-14270250-14274071 l44 e 71 nr 1000000 chr ENSMUST00000172236-chr6-+-40620577-40623071 l43 e 71 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1228309 reads mapping to 484687 Unique genomic coordinates Making up 13391 groups Consisting of 4265 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000090277-chr16-+-14923676-14925972 l44 e 72 nr 1000000 chr ENSMUST00000113676-chr5-+-67736365-67737972 l43 e 72 nr 1500000 chr ENSMUST00000128766-chrX---34511897-34515672 l43 e 72 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1535939 reads mapping to 503915 Unique genomic coordinates Making up 13879 groups Consisting of 4562 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000081880-chr16---19675616-19676673 l44 e 73 nr 1000000 chr ENSMUST00000002336-chr7---6628154-6631473 l41 e 73 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1162164 reads mapping to 490058 Unique genomic coordinates Making up 13529 groups Consisting of 4404 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000075856-chr19---4351237-4352874 l42 e 74 nr 1000000 chr ENSMUST00000129704-chr5---141144476-141145574 l45 e 74 nr 1500000 chr ENSMUST00000032813-chr7---29831324-29833074 l43 e 74 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1706143 reads mapping to 498197 Unique genomic coordinates Making up 13642 groups Consisting of 4394 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000154578-chr11---47164656-47169375 l44 e 75 nr 1000000 chr ENSMUST00000075806-chr16---29260503-29261575 l44 e 75 nr 1500000 chr ENSMUST00000075806-chr16---29260503-29261575 l44 e 75 nr 2000000 chr ENSMUST00000075806-chr16---29260503-29261575 l44 e 75 nr 2500000 chr ENSMUST00000135798-chr4---147221887-147222475 l45 e 75 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2801775 reads mapping to 492571 Unique genomic coordinates Making up 13644 groups Consisting of 4373 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000097284-chr17-+-72039366-72041476 l44 e 76 nr 1000000 chr ENSMUST00000028178-chr2---58147837-58149076 l43 e 76 nr 1500000 chr ENSMUST00000028178-chr2---58147837-58149076 l43 e 76 nr 2000000 chr ENSMUST00000028178-chr2---58147837-58149076 l43 e 76 nr 2500000 chr ENSMUST00000165650-chr6---129374790-129380476 l45 e 76 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2809742 reads mapping to 475379 Unique genomic coordinates Making up 12951 groups Consisting of 4159 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025685-chr19-+-34191855-34193777 l44 e 77 nr 1000000 chr ENSMUST00000098339-chr9-+-111115817-111117277 l45 e 77 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1160922 reads mapping to 482001 Unique genomic coordinates Making up 13398 groups Consisting of 4384 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022613-chr14---66439918-66441078 l44 e 78 nr 1000000 chr ENSMUST00000097504-chr18---82779497-82780578 l44 e 78 nr 1500000 chr ENSMUST00000097504-chr18---82779497-82780578 l44 e 78 nr 2000000 chr ENSMUST00000065169-chr8---72519342-72520278 l43 e 78 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2236642 reads mapping to 530736 Unique genomic coordinates Making up 14490 groups Consisting of 4787 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000040131-chr14-+-79964769-79965879 l44 e 79 nr 1000000 chr ENSMUST00000160277-chr7---27177287-27179779 l43 e 79 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1151859 reads mapping to 483169 Unique genomic coordinates Making up 13387 groups Consisting of 4343 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161204-chr12---80292213-80293280 l44 e 80 nr 1000000 chr ENSMUST00000030036-chr4---68422548-68424680 l43 e 80 nr 1500000 chr ENSMUST00000165771-chr7---93376190-93380280 l43 e 80 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1813409 reads mapping to 505918 Unique genomic coordinates Making up 13882 groups Consisting of 4523 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170322-chr17-+-23094362-23095781 l44 e 81 nr 1000000 chr ENSMUST00000028233-chr2---34894231-34895781 l43 e 81 nr 1500000 chr ENSMUST00000166504-chr8-+-112611822-112614081 l45 e 81 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1585484 reads mapping to 472923 Unique genomic coordinates Making up 13035 groups Consisting of 4193 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000128977-chr13-+-47177744-47179982 l44 e 82 nr 1000000 chr ENSMUST00000155309-chr3---120937461-120939182 l45 e 82 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1349070 reads mapping to 505356 Unique genomic coordinates Making up 13889 groups Consisting of 4522 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022176-chr13---97418922-97423283 l44 e 83 nr 1000000 chr ENSMUST00000023840-chr5-+-96387151-96388283 l43 e 83 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1234530 reads mapping to 507726 Unique genomic coordinates Making up 13908 groups Consisting of 4457 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170802-chr18-+-24035945-24037084 l44 e 84 nr 1000000 chr ENSMUST00000037986-chr8---73306864-73314484 l43 e 84 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1072517 reads mapping to 465262 Unique genomic coordinates Making up 12923 groups Consisting of 4085 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000042556-chr10---77635626-77646285 l44 e 85 nr 1000000 chr ENSMUST00000131013-chr11-+-37472491-37473385 l44 e 85 nr 1500000 chr ENSMUST00000133595-chr17-+-25965812-25968785 l44 e 85 nr 2000000 chr ENSMUST00000141770-chr5-+-135582761-135583585 l45 e 85 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2426566 reads mapping to 503370 Unique genomic coordinates Making up 13710 groups Consisting of 4419 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000063750-chr14---17406872-17407986 l44 e 86 nr 1000000 chr ENSMUST00000165709-chr4-+-106088073-106089186 l45 e 86 nr 1500000 chr ENSMUST00000091237-chr8-+-12856434-12858486 l43 e 86 nr 2000000 chr ENSMUST00000156452-chrX-+-68560375-68563486 l43 e 86 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2135970 reads mapping to 505523 Unique genomic coordinates Making up 13816 groups Consisting of 4556 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023736-chr15---98737468-98740387 l44 e 87 nr 1000000 chr ENSMUST00000156238-chr5-+-89626174-89627287 l43 e 87 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1408927 reads mapping to 512455 Unique genomic coordinates Making up 13990 groups Consisting of 4544 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000000544-chr15-+-101023863-101025988 l46 e 88 nr 1000000 chr ENSMUST00000174265-chr6---124676903-124679488 l45 e 88 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1241393 reads mapping to 491210 Unique genomic coordinates Making up 13482 groups Consisting of 4356 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000169685-chr18---77801871-77802689 l44 e 89 nr 1000000 chr ENSMUST00000066038-chr9-+-15137632-15139789 l43 e 89 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1065647 reads mapping to 465251 Unique genomic coordinates Making up 12663 groups Consisting of 4164 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114076-chr16---91068777-91069390 l44 e 90 nr 1000000 chr ENSMUST00000030207-chr4---83101584-83104590 l43 e 90 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1478607 reads mapping to 479265 Unique genomic coordinates Making up 13180 groups Consisting of 4295 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000168680-chr16-+-49090688-49091791 l44 e 91 nr 1000000 chr ENSMUST00000149002-chr4-+-140873897-140875491 l45 e 91 nr 1500000 chr ENSMUST00000031986-chr6-+-39337508-39338691 l43 e 91 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1924781 reads mapping to 500344 Unique genomic coordinates Making up 13858 groups Consisting of 4391 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000120674-chr16-+-59488816-59489892 l44 e 92 nr 1000000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 1500000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 2000000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 2500000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 3000000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 3500000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 4000000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 4500000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 5000000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 5500000 chr ENSMUST00000122053-chr8-+-87094596-87096292 l43 e 92 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5582130 reads mapping to 481777 Unique genomic coordinates Making up 13187 groups Consisting of 4213 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000138675-chr15-+-81021204-81023193 l44 e 93 nr 1000000 chr ENSMUST00000155757-chr4-+-123596592-123598893 l45 e 93 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1328847 reads mapping to 507933 Unique genomic coordinates Making up 13917 groups Consisting of 4520 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000077951-chr17-+-47490182-47491394 l44 e 94 nr 1000000 chr ENSMUST00000118163-chr9---54228215-54232094 l43 e 94 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1200816 reads mapping to 517815 Unique genomic coordinates Making up 14265 groups Consisting of 4635 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000049742-chr15-+-34767110-34772095 l44 e 95 nr 1000000 chr ENSMUST00000098966-chr8-+-3385860-3390295 l41 e 95 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1102339 reads mapping to 475657 Unique genomic coordinates Making up 12954 groups Consisting of 4192 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000090398-chr14---24964874-24970396 l44 e 96 nr 1000000 chr ENSMUST00000164219-chr5---5664831-5674196 l41 e 96 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1373549 reads mapping to 508688 Unique genomic coordinates Making up 14097 groups Consisting of 4610 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000131348-chr18---39014108-39015197 l44 e 97 nr 1000000 chr ENSMUST00000108550-chr7---10573706-10574997 l43 e 97 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1370106 reads mapping to 481172 Unique genomic coordinates Making up 13199 groups Consisting of 4349 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000120080-chr16---4417353-4420498 l42 e 98 nr 1000000 chr ENSMUST00000014421-chr5---90691784-90695098 l43 e 98 nr 1500000 chr ENSMUST00000014421-chr5---90691784-90695098 l43 e 98 nr 2000000 chr ENSMUST00000126975-chr5-+-141202698-141204298 l45 e 98 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2347900 reads mapping to 499675 Unique genomic coordinates Making up 13747 groups Consisting of 4492 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000000430-chr18-+-24425529-24426699 l44 e 99 nr 1000000 chr ENSMUST00000151196-chr5---145844292-145844899 l45 e 99 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1260096 reads mapping to 481928 Unique genomic coordinates Making up 13254 groups Consisting of 4123 clusters