Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000005256-chr15---66773074-66776900 l44 e 0 nr 1000000 chr ENSMUST00000173382-chr7-+-92455353-92459500 l43 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1206790 reads mapping to 411240 Unique genomic coordinates Making up 11518 groups Consisting of 3594 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000074168-chr2-+-37056763-37057701 l43 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 885456 reads mapping to 415583 Unique genomic coordinates Making up 11644 groups Consisting of 3540 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161405-chr15-+-37262515-37263402 l44 e 2 nr 1000000 chr ENSMUST00000108491-chr7-+-17747797-17749602 l43 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1178576 reads mapping to 460128 Unique genomic coordinates Making up 12647 groups Consisting of 4034 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000158279-chr18---49741350-49741503 l44 e 3 nr 1000000 chr ENSMUST00000044660-chr7-+-135380871-135382603 l45 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1292519 reads mapping to 434854 Unique genomic coordinates Making up 11850 groups Consisting of 3768 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000174466-chr17---37094011-37095504 l44 e 4 nr 1000000 chr ENSMUST00000034533-chr9---32129166-32131104 l43 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1067786 reads mapping to 454452 Unique genomic coordinates Making up 12606 groups Consisting of 3996 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000039894-chr13---14131305-14131905 l44 e 5 nr 1000000 chr ENSMUST00000022921-chr15---42327273-42328505 l44 e 5 nr 1500000 chr ENSMUST00000116354-chr7-+-4869878-4873605 l41 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1635399 reads mapping to 454048 Unique genomic coordinates Making up 12711 groups Consisting of 3900 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000150459-chr10-+-83224163-83225506 l44 e 6 nr 1000000 chr ENSMUST00000099326-chr13---92121699-92123806 l44 e 6 nr 1500000 chr ENSMUST00000096066-chr6-+-30496605-30497706 l43 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1689460 reads mapping to 425513 Unique genomic coordinates Making up 11714 groups Consisting of 3593 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000131246-chr11-+-86298232-86299607 l44 e 7 nr 1000000 chr ENSMUST00000048298-chr18-+-31938011-31939107 l44 e 7 nr 1500000 chr ENSMUST00000129366-chrX-+-124910443-124911507 l45 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1509191 reads mapping to 446664 Unique genomic coordinates Making up 12237 groups Consisting of 3829 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000082319-chr18-+-31963711-31964408 l44 e 8 nr 1000000 chr ENSMUST00000112817-chr5---104304260-104305808 l45 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1331143 reads mapping to 429532 Unique genomic coordinates Making up 11962 groups Consisting of 3664 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000168985-chr14---87171393-87173009 l44 e 9 nr 1000000 chr ENSMUST00000047110-chr3---124282214-124284009 l45 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1383395 reads mapping to 436915 Unique genomic coordinates Making up 12002 groups Consisting of 3846 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000091436-chr2---13388737-13392010 l43 e 10 nr 1000000 chr ENSMUST00000049545-chr5-+-35621215-35624410 l43 e 10 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1474286 reads mapping to 420762 Unique genomic coordinates Making up 11681 groups Consisting of 3601 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000036934-chr2---52158651-52161411 l43 e 11 nr 1000000 chr ENSMUST00000065545-chrY---68871-70011 l37 e 11 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1114113 reads mapping to 437710 Unique genomic coordinates Making up 11900 groups Consisting of 3884 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000021970-chr13---56396687-56397912 l44 e 12 nr 1000000 chr ENSMUST00000107108-chr4---91811020-91813912 l43 e 12 nr 1500000 chr ENSMUST00000033433-chrX-+-46048181-46049112 l43 e 12 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1524674 reads mapping to 451829 Unique genomic coordinates Making up 12177 groups Consisting of 3785 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161861-chr16---16417010-16423413 l44 e 13 nr 1000000 chr ENSMUST00000060084-chr9---104111135-104112713 l45 e 13 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1049391 reads mapping to 449590 Unique genomic coordinates Making up 12354 groups Consisting of 3862 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000072726-chr18-+-64146310-64149414 l44 e 14 nr 1000000 chr ENSMUST00000051715-chr7---114114882-114116414 l45 e 14 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1125444 reads mapping to 450079 Unique genomic coordinates Making up 12420 groups Consisting of 3950 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023330-chr16-+-48431350-48432015 l44 e 15 nr 1000000 chr ENSMUST00000142916-chr7---51052290-51053315 l43 e 15 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1246278 reads mapping to 459053 Unique genomic coordinates Making up 12539 groups Consisting of 4043 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000088811-chr17-+-21161925-21165816 l44 e 16 nr 1000000 chr ENSMUST00000169034-chr8-+-40130176-40131316 l43 e 16 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1170195 reads mapping to 442624 Unique genomic coordinates Making up 12057 groups Consisting of 3879 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000097424-chr17---7942709-7943817 l42 e 17 nr 1000000 chr ENSMUST00000079934-chr2-+-119788928-119795317 l45 e 17 nr 1500000 chr ENSMUST00000120389-chrX---98407298-98411417 l43 e 17 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1528820 reads mapping to 453371 Unique genomic coordinates Making up 12480 groups Consisting of 3945 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000111955-chr14-+-34132889-34133618 l44 e 18 nr 1000000 chr ENSMUST00000043938-chr17-+-50826537-50827818 l44 e 18 nr 1500000 chr ENSMUST00000060576-chrX-+-104118917-104120018 l45 e 18 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1596429 reads mapping to 446790 Unique genomic coordinates Making up 12269 groups Consisting of 3937 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000160571-chr16-+-59471894-59472819 l44 e 19 nr 1000000 chr ENSMUST00000172996-chr9-+-21451295-21452619 l43 e 19 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1178934 reads mapping to 457739 Unique genomic coordinates Making up 12707 groups Consisting of 3960 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000157452-chr18---33164317-33164420 l44 e 20 nr 1000000 chr ENSMUST00000120173-chr9-+-122074854-122078820 l45 e 20 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1025426 reads mapping to 419950 Unique genomic coordinates Making up 11562 groups Consisting of 3658 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000090302-chr14-+-29288289-29291721 l44 e 21 nr 1000000 chr ENSMUST00000071590-chr7-+-130125977-130127021 l45 e 21 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1085825 reads mapping to 411042 Unique genomic coordinates Making up 11249 groups Consisting of 3560 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000150782-chr10-+-80670098-80673622 l44 e 22 nr 1000000 chr ENSMUST00000136990-chr19---59506793-59508022 l44 e 22 nr 1500000 chr ENSMUST00000030675-chr4-+-125724169-125725222 l45 e 22 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1904811 reads mapping to 448962 Unique genomic coordinates Making up 12451 groups Consisting of 4036 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000119284-chr17---79359951-79361023 l44 e 23 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 951792 reads mapping to 448991 Unique genomic coordinates Making up 12301 groups Consisting of 3868 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000162175-chr14---49631821-49634524 l44 e 24 nr 1000000 chr ENSMUST00000052438-chr7---114895345-114898824 l45 e 24 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1126231 reads mapping to 454394 Unique genomic coordinates Making up 12572 groups Consisting of 3875 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000120159-chr17-+-75564547-75565125 l44 e 25 nr 1000000 chr ENSMUST00000107966-chr7-+-51079869-51082825 l43 e 25 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1121798 reads mapping to 431366 Unique genomic coordinates Making up 11898 groups Consisting of 3718 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000174521-chr17-+-35738494-35739226 l44 e 26 nr 1000000 chr ENSMUST00000155106-chr5---127749559-127750626 l45 e 26 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1188357 reads mapping to 462768 Unique genomic coordinates Making up 12831 groups Consisting of 3965 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000162407-chr19-+-5730817-5731627 l42 e 27 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 933101 reads mapping to 424237 Unique genomic coordinates Making up 11524 groups Consisting of 3650 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000128069-chr14---69125411-69128028 l44 e 28 nr 1000000 chr ENSMUST00000134661-chr2-+-118639739-118640728 l45 e 28 nr 1500000 chr ENSMUST00000085709-chr9---57267470-57269528 l43 e 28 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1577326 reads mapping to 435722 Unique genomic coordinates Making up 12090 groups Consisting of 3787 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000037181-chr12---68321457-68323529 l44 e 29 nr 1000000 chr ENSMUST00000037181-chr12---68321457-68323529 l44 e 29 nr 1500000 chr ENSMUST00000142162-chr4-+-111656555-111659029 l45 e 29 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1793294 reads mapping to 432479 Unique genomic coordinates Making up 11883 groups Consisting of 3733 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000073561-chr14-+-51330007-51330930 l44 e 30 nr 1000000 chr ENSMUST00000032214-chr6-+-124881406-124883330 l45 e 30 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1191706 reads mapping to 459185 Unique genomic coordinates Making up 12770 groups Consisting of 4037 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000082070-chr18---31402275-31403331 l44 e 31 nr 1000000 chr ENSMUST00000075190-chr8---105170863-105172331 l45 e 31 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1121321 reads mapping to 462408 Unique genomic coordinates Making up 12467 groups Consisting of 3875 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000087689-chr19-+-17242253-17243332 l44 e 32 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 998427 reads mapping to 433122 Unique genomic coordinates Making up 12010 groups Consisting of 3786 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000112330-chr14---27237099-27238233 l44 e 33 nr 1000000 chr ENSMUST00000170695-chr3-+-45222829-45227633 l43 e 33 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1377115 reads mapping to 443765 Unique genomic coordinates Making up 12264 groups Consisting of 3839 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000119943-chr14-+-61821035-61834334 l44 e 34 nr 1000000 chr ENSMUST00000163038-chr8---3608421-3612334 l41 e 34 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1078223 reads mapping to 434716 Unique genomic coordinates Making up 11959 groups Consisting of 3731 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000124230-chr19---33694926-33696035 l44 e 35 nr 1000000 chr ENSMUST00000055576-chr7-+-73128099-73129235 l43 e 35 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1152107 reads mapping to 441460 Unique genomic coordinates Making up 12180 groups Consisting of 3775 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000016685-chr15-+-85223267-85224436 l44 e 36 nr 1000000 chr ENSMUST00000047025-chr7-+-128274281-128276936 l45 e 36 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1145142 reads mapping to 444654 Unique genomic coordinates Making up 12277 groups Consisting of 3901 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000145575-chr2-+-26442192-26442737 l43 e 37 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 939117 reads mapping to 428685 Unique genomic coordinates Making up 11865 groups Consisting of 3768 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000109399-chr13---99618610-99620638 l44 e 38 nr 1000000 chr ENSMUST00000102625-chr3---108233883-108235038 l45 e 38 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1388501 reads mapping to 431516 Unique genomic coordinates Making up 11897 groups Consisting of 3736 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000137035-chr16---58522689-58523539 l44 e 39 nr 1000000 chr ENSMUST00000135159-chr9-+-66307715-66308839 l43 e 39 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1077681 reads mapping to 444667 Unique genomic coordinates Making up 12284 groups Consisting of 3816 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000138514-chr16---94588668-94589740 l44 e 40 nr 1000000 chr ENSMUST00000034802-chr9---85214046-85219340 l43 e 40 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1071118 reads mapping to 436569 Unique genomic coordinates Making up 12131 groups Consisting of 3809 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000058229-chr14-+-64646079-64652341 l44 e 41 nr 1000000 chr ENSMUST00000107900-chr7---51907301-51908441 l43 e 41 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1182002 reads mapping to 459465 Unique genomic coordinates Making up 12609 groups Consisting of 3889 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000060328-chr18-+-44187523-44189742 l44 e 42 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 962431 reads mapping to 419466 Unique genomic coordinates Making up 11711 groups Consisting of 3605 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000087576-chr19-+-22789219-22790343 l44 e 43 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 915148 reads mapping to 444758 Unique genomic coordinates Making up 12384 groups Consisting of 3850 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000066646-chr19-+-7342791-7346544 l42 e 44 nr 1000000 chr ENSMUST00000033414-chrX-+-21310619-21311744 l43 e 44 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1027348 reads mapping to 439065 Unique genomic coordinates Making up 12191 groups Consisting of 3752 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000174880-chr17---35030295-35031145 l44 e 45 nr 1000000 chr ENSMUST00000114058-chrX---73044234-73048445 l43 e 45 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1052381 reads mapping to 452506 Unique genomic coordinates Making up 12362 groups Consisting of 3863 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000109287-chr15---90794906-90803646 l44 e 46 nr 1000000 chr ENSMUST00000094615-chr5-+-90994935-90996146 l43 e 46 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1218991 reads mapping to 454084 Unique genomic coordinates Making up 12395 groups Consisting of 3850 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000160242-chr15-+-91721047-91725347 l44 e 47 nr 1000000 chr ENSMUST00000108745-chr8-+-131704610-131705647 l45 e 47 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1057623 reads mapping to 430460 Unique genomic coordinates Making up 11820 groups Consisting of 3713 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000068156-chr19---16816429-16818048 l44 e 48 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 927984 reads mapping to 433274 Unique genomic coordinates Making up 12106 groups Consisting of 3810 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161371-chr10-+-122322764-122323349 l46 e 49 nr 1000000 chr ENSMUST00000153734-chr11-+-90048998-90050049 l44 e 49 nr 1500000 chr ENSMUST00000126249-chr2-+-126379326-126380149 l45 e 49 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1893880 reads mapping to 444231 Unique genomic coordinates Making up 12326 groups Consisting of 3860 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000112437-chr17---80251365-80254450 l44 e 50 nr 1000000 chr ENSMUST00000060043-chr6---119897493-119904750 l45 e 50 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1318812 reads mapping to 449139 Unique genomic coordinates Making up 12291 groups Consisting of 3981 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022135-chr13-+-101433350-101434651 l46 e 51 nr 1000000 chr ENSMUST00000031841-chr6---49213337-49214051 l43 e 51 nr 1500000 chr ENSMUST00000101670-chrX-+-23380395-23383151 l43 e 51 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1777809 reads mapping to 419190 Unique genomic coordinates Making up 11518 groups Consisting of 3603 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000026196-chr19---43589671-43590852 l44 e 52 nr 1000000 chr ENSMUST00000166114-chr5---16732014-16733752 l43 e 52 nr 1500000 chr ENSMUST00000164559-chr7---117581854-117582952 l45 e 52 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1629515 reads mapping to 460316 Unique genomic coordinates Making up 12636 groups Consisting of 4043 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000066439-chr19-+-37713612-37714753 l44 e 53 nr 1000000 chr ENSMUST00000140767-chrX-+-100697699-100701353 l45 e 53 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1017399 reads mapping to 450860 Unique genomic coordinates Making up 12407 groups Consisting of 3883 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000095224-chr17-+-56736711-56741454 l44 e 54 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 988617 reads mapping to 456240 Unique genomic coordinates Making up 12574 groups Consisting of 3954 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000049714-chr11-+-83832362-83833955 l44 e 55 nr 1000000 chr ENSMUST00000049714-chr11-+-83832362-83833955 l44 e 55 nr 1500000 chr ENSMUST00000159772-chr13---107776849-107778655 l46 e 55 nr 2000000 chr ENSMUST00000001187-chr6---86710168-86711255 l43 e 55 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2145178 reads mapping to 427679 Unique genomic coordinates Making up 11777 groups Consisting of 3609 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023217-chr15---76283426-76286956 l44 e 56 nr 1000000 chr ENSMUST00000058440-chr5-+-125230631-125231756 l45 e 56 nr 1500000 chr ENSMUST00000034987-chr9-+-86417331-86418456 l43 e 56 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1571096 reads mapping to 449196 Unique genomic coordinates Making up 12225 groups Consisting of 3899 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000024840-chr17---68192053-68195657 l44 e 57 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 999460 reads mapping to 456617 Unique genomic coordinates Making up 12608 groups Consisting of 4052 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025363-chr18---36664583-36667758 l44 e 58 nr 1000000 chr ENSMUST00000074570-chr8-+-97459760-97463058 l43 e 58 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1093605 reads mapping to 422623 Unique genomic coordinates Making up 11698 groups Consisting of 3706 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000087236-chr19-+-39164618-39165759 l44 e 59 nr 1000000 chr ENSMUST00000168164-chr8---13104275-13105459 l43 e 59 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1474543 reads mapping to 430225 Unique genomic coordinates Making up 11776 groups Consisting of 3868 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023828-chr18-+-89188989-89190160 l44 e 60 nr 1000000 chr ENSMUST00000115891-chrY---1371583-1373660 l41 e 60 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1127550 reads mapping to 430222 Unique genomic coordinates Making up 11849 groups Consisting of 3768 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025862-chr19-+-26742743-26744161 l44 e 61 nr 1000000 chr ENSMUST00000155989-chrX---13423216-13423861 l43 e 61 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1020544 reads mapping to 432896 Unique genomic coordinates Making up 11943 groups Consisting of 3814 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022875-chr15-+-27482944-27484062 l44 e 62 nr 1000000 chr ENSMUST00000046548-chr2-+-109757804-109758962 l45 e 62 nr 1500000 chr ENSMUST00000087104-chrX---157289573-157290762 l45 e 62 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1509817 reads mapping to 445818 Unique genomic coordinates Making up 12318 groups Consisting of 3774 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165790-chr16-+-17788730-17789963 l44 e 63 nr 1000000 chr ENSMUST00000122341-chr7-+-34960731-34961063 l43 e 63 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1210044 reads mapping to 428705 Unique genomic coordinates Making up 11829 groups Consisting of 3666 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000115676-chr16-+-17561978-17563464 l44 e 64 nr 1000000 chr ENSMUST00000033458-chrX-+-53399753-53401664 l43 e 64 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1321718 reads mapping to 448619 Unique genomic coordinates Making up 12392 groups Consisting of 3878 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000081275-chr18---7088231-7089065 l42 e 65 nr 1000000 chr ENSMUST00000139609-chr7---108449915-108450765 l45 e 65 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1201673 reads mapping to 428080 Unique genomic coordinates Making up 11807 groups Consisting of 3622 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000011492-chr3-+-35986142-35993866 l43 e 66 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 757030 reads mapping to 389951 Unique genomic coordinates Making up 10773 groups Consisting of 3193 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000115716-chr18-+-36162078-36163167 l44 e 67 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 982582 reads mapping to 440962 Unique genomic coordinates Making up 12113 groups Consisting of 3904 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114371-chr16---57310866-57311968 l44 e 68 nr 1000000 chr ENSMUST00000046386-chr8---124127208-124131368 l45 e 68 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1137103 reads mapping to 451590 Unique genomic coordinates Making up 12602 groups Consisting of 3843 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000156416-chr17---51950593-51952669 l44 e 69 nr 1000000 chr ENSMUST00000009392-chr7---150152727-150155169 l45 e 69 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1248393 reads mapping to 418813 Unique genomic coordinates Making up 11681 groups Consisting of 3554 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114731-chr2-+-14373083-14374270 l43 e 70 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 978856 reads mapping to 411328 Unique genomic coordinates Making up 11628 groups Consisting of 3572 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022553-chr14-+-60137903-60139071 l44 e 71 nr 1000000 chr ENSMUST00000040481-chr8---98359820-98362071 l43 e 71 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1086835 reads mapping to 433670 Unique genomic coordinates Making up 12024 groups Consisting of 3708 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000147076-chr17-+-32187591-32190272 l44 e 72 nr 1000000 chr ENSMUST00000113676-chr5-+-67736365-67737972 l43 e 72 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1364816 reads mapping to 450707 Unique genomic coordinates Making up 12393 groups Consisting of 3978 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000045714-chr17-+-85093832-85099673 l44 e 73 nr 1000000 chr ENSMUST00000074208-chr9---108468197-108469673 l45 e 73 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1025307 reads mapping to 437831 Unique genomic coordinates Making up 12167 groups Consisting of 3825 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000060092-chr2-+-5930861-5931974 l41 e 74 nr 1000000 chr ENSMUST00000129704-chr5---141144476-141145574 l45 e 74 nr 1500000 chr ENSMUST00000113040-chrX-+-135767718-135772874 l45 e 74 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1528465 reads mapping to 445896 Unique genomic coordinates Making up 12251 groups Consisting of 3808 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000018610-chr11-+-78757662-78759975 l44 e 75 nr 1000000 chr ENSMUST00000075806-chr16---29260503-29261575 l44 e 75 nr 1500000 chr ENSMUST00000075806-chr16---29260503-29261575 l44 e 75 nr 2000000 chr ENSMUST00000096554-chr18-+-63081981-63082875 l44 e 75 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2496011 reads mapping to 440402 Unique genomic coordinates Making up 12277 groups Consisting of 3847 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000146205-chr2-+-15995819-15996976 l43 e 76 nr 1000000 chr ENSMUST00000028178-chr2---58147837-58149076 l43 e 76 nr 1500000 chr ENSMUST00000028178-chr2---58147837-58149076 l43 e 76 nr 2000000 chr ENSMUST00000099861-chr2---86975538-86976476 l43 e 76 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2486798 reads mapping to 425149 Unique genomic coordinates Making up 11626 groups Consisting of 3616 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000149239-chr2-+-117727985-117729477 l45 e 77 nr 1000000 chr ENSMUST00000114810-chrX---51089767-51091677 l43 e 77 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1030228 reads mapping to 430524 Unique genomic coordinates Making up 11968 groups Consisting of 3788 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000099742-chr16-+-44455075-44456278 l44 e 78 nr 1000000 chr ENSMUST00000097504-chr18---82779497-82780578 l44 e 78 nr 1500000 chr ENSMUST00000000314-chr2-+-179629917-179634078 l45 e 78 nr 2000000 chr ENSMUST00000112588-chrX-+-148700600-148709078 l45 e 78 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2006180 reads mapping to 475120 Unique genomic coordinates Making up 12991 groups Consisting of 4177 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000100308-chr16---36761016-36763479 l44 e 79 nr 1000000 chr ENSMUST00000127440-chrX---45559345-45561779 l43 e 79 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1018831 reads mapping to 432249 Unique genomic coordinates Making up 12055 groups Consisting of 3784 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000058229-chr14-+-64640227-64641880 l44 e 80 nr 1000000 chr ENSMUST00000130528-chr6---115568085-115572380 l45 e 80 nr 1500000 chr ENSMUST00000165771-chr7---93376190-93380280 l43 e 80 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1624645 reads mapping to 452634 Unique genomic coordinates Making up 12470 groups Consisting of 3940 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000088145-chr19---7938881-7941981 l42 e 81 nr 1000000 chr ENSMUST00000028233-chr2---34894231-34895781 l43 e 81 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1416090 reads mapping to 422962 Unique genomic coordinates Making up 11678 groups Consisting of 3650 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022787-chr14---55376776-55379082 l44 e 82 nr 1000000 chr ENSMUST00000061789-chr5---138173779-138178082 l45 e 82 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1197805 reads mapping to 452452 Unique genomic coordinates Making up 12426 groups Consisting of 3918 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000115612-chr16-+-18388753-18389983 l44 e 83 nr 1000000 chr ENSMUST00000108775-chr8---127962664-127963883 l45 e 83 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1081704 reads mapping to 453847 Unique genomic coordinates Making up 12433 groups Consisting of 3899 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000044038-chr2---30040644-30044384 l43 e 84 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 954984 reads mapping to 415897 Unique genomic coordinates Making up 11625 groups Consisting of 3532 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000042556-chr10---77635626-77646285 l44 e 85 nr 1000000 chr ENSMUST00000037181-chr12---67730392-67731685 l44 e 85 nr 1500000 chr ENSMUST00000151069-chr2---25562027-25563785 l43 e 85 nr 2000000 chr ENSMUST00000161635-chr9---26585104-26586185 l43 e 85 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2143854 reads mapping to 450370 Unique genomic coordinates Making up 12293 groups Consisting of 3882 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000156187-chr15---83813374-83814486 l44 e 86 nr 1000000 chr ENSMUST00000165709-chr4-+-106088073-106089186 l45 e 86 nr 1500000 chr ENSMUST00000156452-chrX-+-68560375-68563486 l43 e 86 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1902946 reads mapping to 451895 Unique genomic coordinates Making up 12371 groups Consisting of 3965 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000172934-chr17---33822637-33825687 l44 e 87 nr 1000000 chr ENSMUST00000130693-chr7-+-28915938-28917287 l43 e 87 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1249091 reads mapping to 458498 Unique genomic coordinates Making up 12643 groups Consisting of 3993 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167464-chr17---20412265-20413388 l44 e 88 nr 1000000 chr ENSMUST00000151210-chr9-+-95581452-95582588 l43 e 88 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1101554 reads mapping to 439314 Unique genomic coordinates Making up 12047 groups Consisting of 3784 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000090726-chr2-+-84787992-84789089 l43 e 89 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 944401 reads mapping to 416325 Unique genomic coordinates Making up 11326 groups Consisting of 3655 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000086545-chr17---80934234-80935290 l44 e 90 nr 1000000 chr ENSMUST00000032421-chr6---142770065-142778290 l45 e 90 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1317009 reads mapping to 428778 Unique genomic coordinates Making up 11711 groups Consisting of 3720 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000096547-chr18-+-77621963-77623091 l44 e 91 nr 1000000 chr ENSMUST00000149002-chr4-+-140873897-140875491 l45 e 91 nr 1500000 chr ENSMUST00000162484-chr9---9781171-9782291 l41 e 91 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1713390 reads mapping to 446810 Unique genomic coordinates Making up 12379 groups Consisting of 3823 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000144006-chr18-+-16977974-16981292 l44 e 92 nr 1000000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 1500000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 2000000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 2500000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 3000000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 3500000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 4000000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 4500000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 5000000 chr ENSMUST00000108775-chr8---127970907-127972292 l45 e 92 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5051856 reads mapping to 430711 Unique genomic coordinates Making up 11812 groups Consisting of 3666 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000068397-chr16-+-11930017-11930693 l44 e 93 nr 1000000 chr ENSMUST00000108212-chr7---30715834-30717993 l43 e 93 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1182465 reads mapping to 454134 Unique genomic coordinates Making up 12498 groups Consisting of 3949 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025989-chr19---41337749-41338494 l44 e 94 nr 1000000 chr ENSMUST00000167502-chr9---61779108-61780494 l43 e 94 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1069661 reads mapping to 463087 Unique genomic coordinates Making up 12672 groups Consisting of 3967 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000063076-chr16---64924555-64927295 l44 e 95 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 974780 reads mapping to 425296 Unique genomic coordinates Making up 11616 groups Consisting of 3668 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000109747-chr15---77753650-77755596 l44 e 96 nr 1000000 chr ENSMUST00000165960-chr5---140816258-140818096 l45 e 96 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1223042 reads mapping to 454353 Unique genomic coordinates Making up 12603 groups Consisting of 4066 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170360-chr19---36130696-36131997 l44 e 97 nr 1000000 chr ENSMUST00000162973-chr9-+-61258570-61266297 l43 e 97 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1217364 reads mapping to 430053 Unique genomic coordinates Making up 11837 groups Consisting of 3815 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000059844-chr17---46872654-46875298 l44 e 98 nr 1000000 chr ENSMUST00000014421-chr5---90691784-90695098 l43 e 98 nr 1500000 chr ENSMUST00000014421-chr5---90691784-90695098 l43 e 98 nr 2000000 chr ENSMUST00000167578-chr9---107331369-107332898 l45 e 98 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2065953 reads mapping to 446820 Unique genomic coordinates Making up 12264 groups Consisting of 3896 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161349-chr2-+-36157017-36157999 l43 e 99 nr 1000000 chr ENSMUST00000110737-chr8-+-23177853-23182099 l43 e 99 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1124271 reads mapping to 431340 Unique genomic coordinates Making up 11869 groups Consisting of 3589 clusters